Wall clock time and date at job start Tue Mar 31 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36002 * 116.99826 * 2 1 4 4 C 1.38510 * 120.07979 * 0.02562 * 3 2 1 5 5 C 1.38283 * 120.01773 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.18262 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.91310 * 180.02562 * 6 5 4 8 8 C 1.38211 * 120.16473 * 359.72290 * 6 5 4 9 9 C 1.38745 * 119.97672 * 0.55443 * 8 6 5 10 10 N 1.39980 * 120.09281 * 179.72432 * 9 8 6 11 11 C 1.39695 * 119.99734 * 253.87021 * 10 9 8 12 12 C 1.39360 * 119.95392 * 7.64791 * 11 10 9 13 13 C 1.38472 * 120.41893 * 179.72237 * 12 11 10 14 14 C 1.37692 * 120.32586 * 0.55233 * 13 12 11 15 15 C 1.40754 * 119.90013 * 359.72243 * 14 13 12 16 16 C 1.41411 * 120.20907 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99869 * 205.28415 * 16 15 14 18 18 C 1.39921 * 119.99865 * 25.27690 * 16 15 14 19 19 N 1.30836 * 119.99895 * 16.24854 * 18 16 15 20 20 Si 1.86806 * 120.00275 * 196.24718 * 18 16 15 21 21 H 1.48500 * 109.47083 * 90.00145 * 20 18 16 22 22 H 1.48494 * 109.47290 * 210.00514 * 20 18 16 23 23 H 1.48508 * 109.46840 * 330.00439 * 20 18 16 24 24 C 1.38298 * 119.94838 * 187.92024 * 11 10 9 25 25 H 1.08997 * 109.46903 * 60.00373 * 1 2 3 26 26 H 1.09002 * 109.46593 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47280 * 300.00070 * 1 2 3 28 28 H 1.07993 * 119.99232 * 0.02562 * 4 3 2 29 29 H 1.07993 * 119.90585 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47008 * 90.00257 * 7 6 5 31 31 H 1.09007 * 109.46422 * 209.99851 * 7 6 5 32 32 H 1.09001 * 109.47080 * 329.99384 * 7 6 5 33 33 H 1.07999 * 120.01020 * 180.29523 * 8 6 5 34 34 H 0.97001 * 119.99851 * 73.59124 * 10 9 8 35 35 H 1.08005 * 119.78704 * 359.97438 * 12 11 10 36 36 H 1.07997 * 119.83479 * 180.25373 * 13 12 11 37 37 H 1.07994 * 120.05125 * 179.74700 * 14 13 12 38 38 H 0.97001 * 119.99812 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.17177 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2936 2.3745 0.0005 5 6 1.9227 3.6059 0.0011 6 6 3.3033 3.6812 0.0016 7 6 3.9826 5.0265 0.0028 8 6 4.0619 2.5259 0.0074 9 6 3.4377 1.2868 0.0010 10 7 4.2037 0.1151 0.0011 11 6 4.3096 -0.6500 -1.1629 12 6 3.7882 -0.1683 -2.3621 13 6 3.8929 -0.9162 -3.5228 14 6 4.5040 -2.1499 -3.5022 15 6 5.0304 -2.6521 -2.2972 16 6 5.6588 -3.9186 -2.2685 17 1 5.6949 -4.4827 -1.3482 18 6 6.2337 -4.4409 -3.4323 19 7 6.4778 -3.6562 -4.4503 20 14 6.6528 -6.2586 -3.5325 21 1 5.4878 -7.0062 -4.0701 22 1 7.8201 -6.4486 -4.4305 23 1 6.9835 -6.7658 -2.1765 24 6 4.9269 -1.8869 -1.1222 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2151 2.3193 0.0014 29 1 1.3340 4.5113 0.0019 30 1 4.1460 5.3501 1.0307 31 1 4.9410 4.9499 -0.5108 32 1 3.3521 5.7523 -0.5109 33 1 5.1401 2.5877 0.0126 34 1 4.6641 -0.1633 0.8081 35 1 3.3028 0.7962 -2.3872 36 1 3.4891 -0.5320 -4.4478 37 1 4.5796 -2.7312 -4.4092 38 1 6.8767 -4.0182 -5.2570 39 1 5.3279 -2.2631 -0.1927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173986796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:44 Heat of formation + Delta-G solvation = 8.286296 kcal Electronic energy + Delta-G solvation = -21377.037270 eV Core-core repulsion = 18249.319639 eV Total energy + Delta-G solvation = -3127.717631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.14524 -37.76305 -37.30356 -34.98737 -33.10360 -31.61729 -30.04035 -29.59819 -27.72387 -26.97985 -25.72772 -25.10013 -22.29786 -21.21762 -20.71768 -19.89836 -17.91670 -17.27328 -16.16579 -16.10415 -15.60886 -15.22743 -14.80149 -14.33228 -14.26110 -13.92543 -13.73360 -13.58958 -12.91191 -12.69042 -12.35048 -12.09902 -12.01590 -11.92645 -11.68436 -11.46236 -11.20350 -11.04097 -10.88312 -10.69799 -10.53786 -10.37615 -9.75215 -9.36406 -9.26557 -8.89405 -8.56642 -7.76593 -7.31511 -6.64129 -6.22642 -4.25420 1.45668 1.57580 2.90634 3.13271 3.17008 3.26646 3.40337 3.53469 3.84971 4.01504 4.20547 4.78079 4.88992 5.00647 5.10841 5.25229 5.29390 5.36562 5.50479 5.59784 5.61479 5.77708 5.88925 5.95187 6.01115 6.36392 6.40931 6.50096 6.63359 6.69757 6.89320 7.08351 7.16425 7.17674 7.38913 7.42975 7.60243 7.91374 7.97835 8.20296 8.30916 8.55364 8.68540 8.83848 9.05456 9.16474 10.31920 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026272 B = 0.004005 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.501922 B = 6989.012450 C = 7438.431357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.294 6.294 3 C 0.118 3.882 4 C -0.204 4.204 5 C -0.094 4.094 6 C -0.121 4.121 7 C -0.106 4.106 8 C -0.094 4.094 9 C 0.150 3.850 10 N -0.708 5.708 11 C 0.225 3.775 12 C -0.280 4.280 13 C -0.079 4.079 14 C -0.193 4.193 15 C 0.139 3.861 16 C -0.465 4.465 17 H 0.075 0.925 18 C 0.077 3.923 19 N -0.796 5.796 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.279 4.279 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.128 0.872 34 H 0.397 0.603 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.278 0.722 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 11.352 7.413 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.206 6.206 3 C 0.070 3.930 4 C -0.224 4.224 5 C -0.113 4.113 6 C -0.122 4.122 7 C -0.163 4.163 8 C -0.114 4.114 9 C 0.055 3.945 10 N -0.338 5.338 11 C 0.130 3.870 12 C -0.303 4.303 13 C -0.098 4.098 14 C -0.213 4.213 15 C 0.136 3.864 16 C -0.496 4.496 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.422 5.422 20 Si 0.731 3.269 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.303 4.303 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.067 0.933 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.232 0.768 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.978 11.222 7.090 15.487 hybrid contribution 0.075 -0.739 0.108 0.750 sum -7.903 10.483 7.198 14.973 Atomic orbital electron populations 1.23016 0.79463 1.03740 1.00573 1.86296 1.20227 1.26050 1.88024 1.19584 0.92148 0.84542 0.96693 1.21088 0.99679 0.92156 1.09448 1.20702 0.93815 0.96690 1.00046 1.19640 0.93478 0.95087 1.03960 1.20684 1.00364 0.93422 1.01796 1.21193 1.00023 0.90544 0.99669 1.16823 0.86684 0.87465 1.03518 1.41698 1.55759 1.24132 1.12245 1.17401 0.95079 0.90041 0.84527 1.19839 1.16189 1.01744 0.92490 1.20429 0.98721 0.95287 0.95342 1.21199 1.04157 0.96674 0.99314 1.17318 0.87370 0.91403 0.90314 1.19537 1.32096 1.02007 0.95912 0.90687 1.25868 0.93640 0.99460 0.95020 1.69859 1.31542 1.36202 1.04561 0.86354 0.78469 0.82935 0.79131 1.19398 1.20441 1.18741 1.20418 1.15645 0.95124 0.99092 0.92975 0.88454 0.93287 0.85694 0.86228 0.91712 0.91696 0.91909 0.85364 0.76760 0.90018 0.89749 0.86673 0.91136 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.29 -5.14 10.12 -19.75 -0.20 -5.34 16 3 C 0.12 1.98 6.21 -39.07 -0.24 1.74 16 4 C -0.20 -2.78 9.04 -39.46 -0.36 -3.14 16 5 C -0.09 -1.17 9.69 -39.55 -0.38 -1.55 16 6 C -0.12 -1.57 5.88 -104.62 -0.62 -2.18 16 7 C -0.11 -1.04 10.01 36.01 0.36 -0.68 16 8 C -0.09 -1.44 9.62 -39.40 -0.38 -1.82 16 9 C 0.15 2.64 4.57 -83.54 -0.38 2.26 16 10 N -0.71 -13.86 5.18 -8.34 -0.04 -13.91 16 11 C 0.23 5.33 6.45 -83.84 -0.54 4.79 16 12 C -0.28 -6.79 9.19 -39.08 -0.36 -7.15 16 13 C -0.08 -1.98 10.01 -39.69 -0.40 -2.38 16 14 C -0.19 -5.28 8.69 -38.83 -0.34 -5.62 16 15 C 0.14 3.86 5.57 -106.85 -0.59 3.27 16 16 C -0.47 -12.80 9.06 -37.75 -0.34 -13.14 16 17 H 0.07 1.99 7.90 -52.49 -0.41 1.58 16 18 C 0.08 2.00 5.17 -17.35 -0.09 1.91 16 19 N -0.80 -21.27 10.91 55.55 0.61 -20.67 16 20 Si 0.91 19.24 29.59 -169.99 -5.03 14.21 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.28 -7.17 9.64 -38.67 -0.37 -7.54 16 25 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 26 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 28 H 0.13 1.39 6.30 -52.49 -0.33 1.06 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.62 8.09 -51.92 -0.42 0.20 16 32 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 34 H 0.40 7.00 8.84 -40.82 -0.36 6.63 16 35 H 0.08 1.91 6.78 -52.48 -0.36 1.55 16 36 H 0.08 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.12 3.24 6.15 -52.49 -0.32 2.91 16 38 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 39 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 329.97 15.07 4.97 4.97 Total: -1.00 -30.64 329.97 -8.83 -39.47 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.09 Total: 11.18 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -4.04 Total: -29.90 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.56 Total: -34.58 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.20 Total: -5.34 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.64 -8.83 -39.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173986796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.751 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds