Wall clock time and date at job start Tue Mar 31 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35976 * 117.00040 * 2 1 4 4 C 1.38516 * 120.08803 * 0.02628 * 3 2 1 5 5 C 1.38273 * 120.02582 * 179.97438 * 4 3 2 6 6 C 1.38297 * 120.19557 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.91053 * 180.02562 * 6 5 4 8 8 C 1.38164 * 120.17797 * 359.79085 * 6 5 4 9 9 C 1.38832 * 119.97374 * 0.46149 * 8 6 5 10 10 N 1.39783 * 120.09886 * 179.79664 * 9 8 6 11 11 C 1.38614 * 119.99884 * 353.13741 * 10 9 8 12 12 C 1.38834 * 120.30417 * 315.51081 * 11 10 9 13 13 C 1.38095 * 120.02437 * 179.97438 * 12 11 10 14 14 C 1.38942 * 120.63211 * 0.02562 * 13 12 11 15 15 C 1.36417 * 120.61536 * 0.02562 * 14 13 12 16 16 C 1.40741 * 119.95146 * 0.25484 * 15 14 13 17 17 C 1.41006 * 120.31309 * 179.72708 * 16 15 14 18 18 H 1.07993 * 120.00210 * 151.53945 * 17 16 15 19 19 C 1.39899 * 119.99456 * 331.54098 * 17 16 15 20 20 N 1.30890 * 119.99874 * 157.15815 * 19 17 16 21 21 Si 1.86796 * 120.00222 * 337.15228 * 19 17 16 22 22 H 1.48502 * 109.47062 * 90.40873 * 21 19 17 23 23 H 1.48499 * 109.47376 * 210.40743 * 21 19 17 24 24 H 1.48499 * 109.47453 * 330.41023 * 21 19 17 25 25 H 1.08998 * 109.46870 * 59.99874 * 1 2 3 26 26 H 1.08995 * 109.47277 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46856 * 299.99931 * 1 2 3 28 28 H 1.08001 * 119.98426 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.90394 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.46976 * 90.00048 * 7 6 5 31 31 H 1.08997 * 109.47563 * 209.99529 * 7 6 5 32 32 H 1.09000 * 109.47519 * 330.00244 * 7 6 5 33 33 H 1.07999 * 120.01747 * 180.23761 * 8 6 5 34 34 H 0.96999 * 119.99885 * 173.14164 * 10 9 8 35 35 H 1.08004 * 119.98770 * 0.02783 * 12 11 10 36 36 H 1.07996 * 119.68646 * 180.02562 * 13 12 11 37 37 H 1.08005 * 119.69068 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.02278 * 179.97438 * 15 14 13 39 39 H 0.97004 * 120.00048 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2937 2.3744 0.0005 5 6 1.9228 3.6057 0.0011 6 6 3.3037 3.6813 0.0016 7 6 3.9827 5.0268 0.0028 8 6 4.0625 2.5267 0.0060 9 6 3.4384 1.2866 0.0001 10 7 4.2035 0.1167 0.0002 11 6 5.5809 0.1895 -0.1373 12 6 6.1465 1.0257 -1.0904 13 6 7.5195 1.0941 -1.2221 14 6 8.3477 0.3313 -0.4080 15 6 7.8196 -0.4998 0.5361 16 6 6.4236 -0.5936 0.6881 17 6 5.8694 -1.4544 1.6577 18 1 4.9118 -1.2239 2.1004 19 6 6.5603 -2.6073 2.0461 20 7 6.3135 -3.1581 3.2075 21 14 7.8350 -3.3605 0.9072 22 1 9.1678 -2.7743 1.1993 23 1 7.8829 -4.8294 1.1204 24 1 7.4678 -3.0768 -0.5034 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 0.2151 2.3192 0.0006 29 1 1.3341 4.5112 0.0011 30 1 4.1460 5.3504 1.0308 31 1 4.9411 4.9506 -0.5107 32 1 3.3520 5.7525 -0.5107 33 1 5.1407 2.5887 0.0102 34 1 3.7706 -0.7459 0.0965 35 1 5.5126 1.6237 -1.7284 36 1 7.9537 1.7467 -1.9650 37 1 9.4195 0.3969 -0.5238 38 1 8.4723 -1.0888 1.1635 39 1 6.7922 -3.9576 3.4767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173987543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:47 Heat of formation + Delta-G solvation = 7.931238 kcal Electronic energy + Delta-G solvation = -21789.257960 eV Core-core repulsion = 18661.524932 eV Total energy + Delta-G solvation = -3127.733028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.01249 -38.29495 -37.11317 -34.78843 -33.67954 -31.47164 -30.64093 -29.60534 -27.85089 -27.51394 -25.56792 -24.97867 -22.18114 -21.70968 -20.45925 -19.96154 -17.80264 -17.37846 -16.74631 -16.21482 -15.46029 -15.28006 -14.85872 -14.20137 -14.09410 -13.74130 -13.70425 -13.52646 -13.36217 -12.97572 -12.60490 -12.17503 -12.01228 -11.95525 -11.67095 -11.56920 -11.16794 -11.04957 -10.90759 -10.70486 -10.62993 -10.43651 -10.05967 -9.76919 -9.67084 -9.12446 -8.13086 -7.71166 -7.67581 -7.02487 -6.38865 -4.45560 1.80286 1.90405 2.59150 2.67455 3.08556 3.18053 3.28481 3.60019 3.93513 4.21728 4.29147 4.45679 5.10012 5.22395 5.27298 5.30016 5.36128 5.52013 5.59008 5.63917 5.84233 5.86048 5.99933 6.07869 6.09125 6.17169 6.28426 6.39005 6.55495 6.64500 6.70422 6.82198 7.04617 7.12022 7.12799 7.25639 7.45598 7.55076 7.73019 7.82305 8.00523 8.21516 8.33926 8.60270 8.71777 8.81264 9.99208 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.005983 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.801912 B = 4678.903261 C = 5839.877952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.320 6.320 3 C 0.038 3.962 4 C -0.161 4.161 5 C -0.158 4.158 6 C -0.075 4.075 7 C -0.107 4.107 8 C -0.168 4.168 9 C 0.208 3.792 10 N -0.648 5.648 11 C 0.044 3.956 12 C -0.102 4.102 13 C -0.229 4.229 14 C -0.090 4.090 15 C -0.225 4.225 16 C 0.079 3.921 17 C -0.444 4.444 18 H 0.092 0.908 19 C 0.087 3.913 20 N -0.799 5.799 21 Si 0.911 3.089 22 H -0.266 1.266 23 H -0.290 1.290 24 H -0.248 1.248 25 H 0.048 0.952 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.140 0.860 34 H 0.409 0.591 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.914 7.748 -5.583 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.234 6.234 3 C -0.010 4.010 4 C -0.181 4.181 5 C -0.179 4.179 6 C -0.076 4.076 7 C -0.164 4.164 8 C -0.191 4.191 9 C 0.103 3.897 10 N -0.267 5.267 11 C -0.052 4.052 12 C -0.123 4.123 13 C -0.249 4.249 14 C -0.109 4.109 15 C -0.245 4.245 16 C 0.074 3.926 17 C -0.472 4.472 18 H 0.110 0.890 19 C -0.133 4.133 20 N -0.422 5.422 21 Si 0.737 3.263 22 H -0.192 1.192 23 H -0.218 1.218 24 H -0.171 1.171 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.157 0.843 34 H 0.246 0.754 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.701 7.352 -5.361 11.300 hybrid contribution 0.084 -0.662 -0.167 0.688 sum -6.616 6.690 -5.528 10.913 Atomic orbital electron populations 1.22895 0.79301 1.03210 1.00642 1.86003 1.20505 1.26809 1.90082 1.18426 0.90329 0.84650 1.07609 1.20817 0.98894 0.91937 1.06424 1.20406 0.93711 0.96339 1.07437 1.19528 0.93268 0.94713 1.00127 1.20702 1.00222 0.93615 1.01878 1.20772 1.00746 0.89483 1.08098 1.17334 0.86895 0.88246 0.97220 1.41416 1.03910 1.05646 1.75741 1.17509 0.81829 1.06921 0.98917 1.20626 0.94795 1.00285 0.96570 1.20197 0.92855 1.06834 1.05009 1.20349 0.97627 0.96725 0.96159 1.20735 0.94578 1.05286 1.03857 1.17659 0.90981 0.93784 0.90146 1.19294 1.06444 1.04684 1.16773 0.89032 1.26183 0.96068 0.96757 0.94327 1.69767 1.36766 1.18139 1.17528 0.86367 0.80576 0.76538 0.82790 1.19226 1.21761 1.17147 0.93312 0.88834 0.93227 0.86215 0.86926 0.91633 0.91733 0.92148 0.84276 0.75401 0.88125 0.88695 0.88924 0.87780 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 9.81 101.05 0.99 1.40 16 2 O -0.32 -5.42 9.76 -19.66 -0.19 -5.61 16 3 C 0.04 0.67 6.71 -39.04 -0.26 0.41 16 4 C -0.16 -2.44 9.04 -39.47 -0.36 -2.80 16 5 C -0.16 -2.33 9.69 -39.55 -0.38 -2.71 16 6 C -0.08 -1.19 5.88 -104.62 -0.62 -1.80 16 7 C -0.11 -1.34 10.01 36.01 0.36 -0.98 16 8 C -0.17 -3.11 7.78 -39.39 -0.31 -3.42 16 9 C 0.21 4.11 6.44 -83.58 -0.54 3.57 16 10 N -0.65 -14.01 4.85 -7.93 -0.04 -14.05 16 11 C 0.04 1.01 5.81 -83.30 -0.48 0.53 16 12 C -0.10 -2.16 7.39 -39.41 -0.29 -2.45 16 13 C -0.23 -4.69 10.03 -39.37 -0.40 -5.09 16 14 C -0.09 -1.92 9.96 -39.98 -0.40 -2.32 16 15 C -0.22 -5.35 7.35 -39.29 -0.29 -5.64 16 16 C 0.08 1.98 5.11 -106.63 -0.55 1.43 16 17 C -0.44 -11.79 8.92 -37.91 -0.34 -12.13 16 18 H 0.09 2.59 7.76 -52.49 -0.41 2.18 16 19 C 0.09 2.24 5.34 -17.33 -0.09 2.14 16 20 N -0.80 -20.98 13.93 55.55 0.77 -20.20 16 21 Si 0.91 20.50 24.83 -169.99 -4.22 16.28 16 22 H -0.27 -5.82 6.42 56.52 0.36 -5.46 16 23 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.25 -5.74 7.11 56.52 0.40 -5.34 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.53 7.66 -51.92 -0.40 0.13 16 28 H 0.12 1.47 6.30 -52.49 -0.33 1.14 16 29 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.14 2.70 5.47 -52.49 -0.29 2.42 16 34 H 0.41 8.93 7.81 -40.82 -0.32 8.62 16 35 H 0.10 1.98 6.88 -52.48 -0.36 1.62 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 38 H 0.10 2.48 4.75 -52.49 -0.25 2.23 16 39 H 0.29 6.79 8.30 -40.82 -0.34 6.46 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -27.80 318.48 -7.70 -35.50 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -4.88 Total: 13.14 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -3.94 Total: -29.86 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.74 Total: -34.25 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.19 Total: -5.61 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.22 Total: 16.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.80 -7.70 -35.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173987543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.432 kcal (2) G-P(sol) polarization free energy of solvation -27.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds