Wall clock time and date at job start Tue Mar 31 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35979 * 116.99866 * 2 1 4 4 C 1.38762 * 119.97034 * 359.97438 * 3 2 1 5 5 C 1.38050 * 120.02068 * 180.02562 * 4 3 2 6 6 C 1.38970 * 119.97358 * 0.27222 * 5 4 3 7 7 N 1.39775 * 120.02320 * 179.72358 * 6 5 4 8 8 C 1.38756 * 119.99929 * 208.81911 * 7 6 5 9 9 C 1.39621 * 119.84661 * 32.03928 * 8 7 6 10 10 C 1.36304 * 120.15581 * 179.76025 * 9 8 7 11 11 C 1.40906 * 119.83697 * 0.53457 * 10 9 8 12 12 C 1.41104 * 120.14940 * 179.70179 * 11 10 9 13 13 H 1.07995 * 120.00115 * 151.80552 * 12 11 10 14 14 C 1.39830 * 119.99729 * 331.80064 * 12 11 10 15 15 N 1.30926 * 120.00302 * 339.90794 * 14 12 11 16 16 Si 1.86803 * 119.99949 * 159.90704 * 14 12 11 17 17 H 1.48492 * 109.47257 * 94.97971 * 16 14 12 18 18 H 1.48504 * 109.46968 * 214.98292 * 16 14 12 19 19 H 1.48500 * 109.47129 * 334.97532 * 16 14 12 20 20 C 1.40903 * 119.70050 * 359.71748 * 11 10 9 21 21 C 1.36295 * 119.83934 * 0.02562 * 20 11 10 22 22 C 1.38936 * 119.95003 * 359.49721 * 6 5 4 23 23 C 1.38079 * 119.97601 * 0.48613 * 22 6 5 24 24 C 1.50697 * 119.98651 * 179.75039 * 23 22 6 25 25 H 1.09002 * 109.46940 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47466 * 300.00417 * 1 2 3 27 27 H 1.09003 * 109.47040 * 60.00551 * 1 2 3 28 28 H 1.07992 * 119.99533 * 0.02562 * 4 3 2 29 29 H 1.07996 * 120.01334 * 180.02562 * 5 4 3 30 30 H 0.96999 * 119.99661 * 28.82465 * 7 6 5 31 31 H 1.08000 * 119.92095 * 359.97438 * 9 8 7 32 32 H 1.08002 * 120.08141 * 180.27783 * 10 9 8 33 33 H 0.96998 * 120.00105 * 180.02562 * 15 14 12 34 34 H 1.07998 * 120.08238 * 179.97438 * 20 11 10 35 35 H 1.08000 * 119.92141 * 179.97438 * 21 20 11 36 36 H 1.08003 * 120.00797 * 180.20959 * 22 6 5 37 37 H 1.08998 * 109.46636 * 270.01388 * 24 23 22 38 38 H 1.08992 * 109.47423 * 30.01506 * 24 23 22 39 39 H 1.09000 * 109.47283 * 150.01961 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2899 2.3749 -0.0005 5 6 1.9155 3.6055 -0.0011 6 6 3.3033 3.6789 -0.0068 7 7 3.9378 4.9243 -0.0132 8 6 5.1885 5.0627 -0.5978 9 6 5.5328 4.2738 -1.6971 10 6 6.7579 4.4080 -2.2794 11 6 7.6819 5.3377 -1.7622 12 6 8.9543 5.4776 -2.3559 13 1 9.4741 6.4227 -2.3026 14 6 9.5421 4.3924 -3.0132 15 7 9.1349 3.1743 -2.7591 16 14 10.9085 4.6806 -4.2539 17 1 12.2252 4.5333 -3.5834 18 1 10.7980 3.6867 -5.3517 19 1 10.7884 6.0510 -4.8132 20 6 7.3296 6.1268 -0.6493 21 6 6.0992 5.9859 -0.0802 22 6 4.0595 2.5134 -0.0014 23 6 3.4316 1.2836 -0.0005 24 6 4.2516 0.0193 -0.0004 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2115 2.3178 -0.0005 29 1 1.3267 4.5109 -0.0011 30 1 3.5037 5.6918 0.3912 31 1 4.8255 3.5580 -2.0892 32 1 7.0213 3.8003 -3.1324 33 1 9.5430 2.4215 -3.2147 34 1 8.0331 6.8410 -0.2476 35 1 5.8279 6.5898 0.7731 36 1 5.1381 2.5693 -0.0024 37 1 4.4490 -0.2858 -1.0280 38 1 5.1961 0.1988 0.5131 39 1 3.7028 -0.7697 0.5138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174829585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:12 Heat of formation + Delta-G solvation = 5.566239 kcal Electronic energy + Delta-G solvation = -21159.876656 eV Core-core repulsion = 18032.041074 eV Total energy + Delta-G solvation = -3127.835582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.02962 -38.46158 -37.00808 -34.78016 -33.18444 -32.17583 -29.70214 -29.35820 -28.15341 -27.29563 -26.28944 -24.46662 -21.87974 -21.57255 -20.74479 -19.96006 -17.71342 -17.32946 -16.70648 -16.19638 -15.63636 -15.48086 -15.05257 -14.17920 -13.97091 -13.75987 -13.37580 -13.15982 -12.90459 -12.71398 -12.50039 -12.16979 -11.97625 -11.88685 -11.80912 -11.64077 -11.37942 -11.11371 -11.03977 -10.86494 -10.55369 -10.47120 -9.88808 -9.71131 -9.33190 -8.96245 -8.42227 -7.63714 -7.55705 -6.79791 -6.40604 -4.22696 1.65305 1.83476 2.79029 3.00639 3.08827 3.12361 3.20620 3.51092 3.95033 4.11176 4.18318 4.63279 4.99266 5.06752 5.14725 5.18203 5.42274 5.57936 5.62530 5.65576 5.82943 5.94788 5.99448 6.15029 6.23875 6.25342 6.36381 6.54354 6.60454 6.78914 6.86026 6.96382 7.05283 7.13039 7.22296 7.45322 7.56275 7.66047 7.75774 8.01964 8.16483 8.36485 8.50240 8.62906 8.88815 8.97978 10.20525 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.003973 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.328094 B = 7046.094206 C = 7932.523162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.064 3.936 4 C -0.167 4.167 5 C -0.162 4.162 6 C 0.183 3.817 7 N -0.679 5.679 8 C 0.031 3.969 9 C -0.122 4.122 10 C -0.141 4.141 11 C 0.101 3.899 12 C -0.466 4.466 13 H 0.077 0.923 14 C 0.078 3.922 15 N -0.793 5.793 16 Si 0.903 3.097 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.204 4.204 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.076 4.076 24 C -0.104 4.104 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.394 0.606 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.280 0.720 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.376 -4.063 3.856 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.234 6.234 3 C 0.018 3.982 4 C -0.186 4.186 5 C -0.185 4.185 6 C 0.082 3.918 7 N -0.301 5.301 8 C -0.063 4.063 9 C -0.143 4.143 10 C -0.161 4.161 11 C 0.098 3.902 12 C -0.496 4.496 13 H 0.095 0.905 14 C -0.139 4.139 15 N -0.419 5.419 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.224 4.224 21 C -0.140 4.140 22 C -0.153 4.153 23 C -0.078 4.078 24 C -0.161 4.161 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.228 0.772 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.155 0.845 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.107 -4.545 3.727 13.459 hybrid contribution 0.164 0.553 -0.401 0.702 sum -11.944 -3.992 3.327 13.025 Atomic orbital electron populations 1.22912 0.79598 1.03085 1.00842 1.86023 1.20240 1.27197 1.89965 1.18565 0.91601 0.83819 1.04170 1.20818 0.99027 0.91869 1.06911 1.20459 0.92715 0.97182 1.08104 1.17731 0.90814 0.86345 0.96944 1.41529 1.18512 1.07065 1.63010 1.17162 0.86250 1.04835 0.98073 1.20333 0.97626 1.00697 0.95601 1.20804 0.92051 1.02130 1.01074 1.17583 0.92758 0.90297 0.89585 1.19433 1.01778 0.97791 1.30592 0.90484 1.25850 0.97804 0.94477 0.95806 1.69869 1.38205 0.99161 1.34634 0.86395 0.80802 0.79579 0.80526 1.19662 1.20069 1.18474 1.20594 0.96288 1.06141 0.99399 1.20078 0.93911 1.00694 0.99350 1.20844 1.00644 0.89782 1.04025 1.19037 0.90309 0.95612 1.02812 1.20600 0.98829 0.94359 1.02292 0.88940 0.93249 0.93192 0.86147 0.86427 0.77211 0.88948 0.87007 0.90909 0.88712 0.89272 0.84499 0.91398 0.91595 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.44 9.53 -19.67 -0.19 -4.63 16 3 C 0.06 0.99 6.66 -39.21 -0.26 0.73 16 4 C -0.17 -2.36 9.03 -39.46 -0.36 -2.72 16 5 C -0.16 -2.44 9.95 -39.38 -0.39 -2.83 16 6 C 0.18 3.20 5.92 -83.71 -0.50 2.71 16 7 N -0.68 -12.22 5.41 -8.28 -0.04 -12.26 16 8 C 0.03 0.66 5.88 -83.70 -0.49 0.17 16 9 C -0.12 -2.83 7.83 -39.76 -0.31 -3.14 16 10 C -0.14 -3.59 8.62 -39.27 -0.34 -3.93 16 11 C 0.10 2.62 5.52 -106.79 -0.59 2.03 16 12 C -0.47 -12.21 9.00 -37.90 -0.34 -12.55 16 13 H 0.08 1.94 7.92 -52.49 -0.42 1.53 16 14 C 0.08 1.95 5.04 -17.34 -0.09 1.87 16 15 N -0.79 -20.38 11.35 55.54 0.63 -19.75 16 16 Si 0.90 18.55 29.60 -169.99 -5.03 13.51 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 C -0.20 -4.88 9.74 -39.27 -0.38 -5.26 16 21 C -0.12 -2.60 9.89 -39.76 -0.39 -2.99 16 22 C -0.13 -2.40 7.60 -39.38 -0.30 -2.70 16 23 C -0.08 -1.28 5.89 -104.50 -0.62 -1.89 16 24 C -0.10 -1.54 9.79 36.00 0.35 -1.19 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 27 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 28 H 0.12 1.36 6.29 -52.49 -0.33 1.03 16 29 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.39 6.06 8.90 -40.82 -0.36 5.70 16 31 H 0.09 2.08 6.71 -52.49 -0.35 1.72 16 32 H 0.11 2.96 6.52 -52.49 -0.34 2.62 16 33 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 34 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.14 2.79 6.61 -52.48 -0.35 2.45 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.07 0.90 7.52 -51.93 -0.39 0.51 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -27.85 326.02 -8.74 -36.59 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.00 Total: 12.05 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -4.01 Total: -30.41 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.59 Total: -32.01 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.19 Total: -4.63 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.85 -8.74 -36.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174829585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.154 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds