Wall clock time and date at job start Tue Mar 31 2020 05:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35968 * 116.99846 * 2 1 4 4 C 1.38771 * 119.97990 * 0.02562 * 3 2 1 5 5 C 1.38030 * 120.02634 * 179.76811 * 4 3 2 6 6 C 1.38976 * 119.97758 * 0.46417 * 5 4 3 7 7 N 1.39768 * 120.02841 * 179.79274 * 6 5 4 8 8 C 1.38622 * 119.99731 * 4.11860 * 7 6 5 9 9 C 1.38833 * 120.30075 * 256.13472 * 8 7 6 10 10 C 1.38104 * 120.01788 * 180.32293 * 9 8 7 11 11 C 1.38941 * 120.63826 * 359.67904 * 10 9 8 12 12 C 1.36415 * 120.60966 * 0.02562 * 11 10 9 13 13 C 1.40742 * 119.95720 * 0.02562 * 12 11 10 14 14 C 1.40998 * 120.31489 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00213 * 154.32444 * 14 13 12 16 16 C 1.39895 * 119.99834 * 334.33248 * 14 13 12 17 17 N 1.30895 * 120.00290 * 329.28702 * 16 14 13 18 18 Si 1.86802 * 119.99707 * 149.28972 * 16 14 13 19 19 H 1.48510 * 109.46906 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47278 * 299.99261 * 18 16 14 21 21 H 1.48497 * 109.47411 * 59.99916 * 18 16 14 22 22 C 1.38938 * 119.94662 * 359.51441 * 6 5 4 23 23 C 1.38076 * 119.97587 * 0.25576 * 22 6 5 24 24 C 1.50705 * 119.98866 * 179.97438 * 23 22 6 25 25 H 1.09008 * 109.47054 * 60.00117 * 1 2 3 26 26 H 1.08997 * 109.47393 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47080 * 300.00083 * 1 2 3 28 28 H 1.08003 * 119.98137 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.01567 * 180.23192 * 5 4 3 30 30 H 0.97000 * 120.00071 * 184.11654 * 7 6 5 31 31 H 1.07998 * 119.99332 * 0.02562 * 9 8 7 32 32 H 1.07999 * 119.68077 * 179.69622 * 10 9 8 33 33 H 1.07995 * 119.69561 * 180.02562 * 11 10 9 34 34 H 1.07998 * 120.02080 * 180.02562 * 12 11 10 35 35 H 0.97005 * 119.99590 * 352.86583 * 17 16 14 36 36 H 1.08004 * 120.00838 * 180.28053 * 22 6 5 37 37 H 1.08999 * 109.47254 * 89.99765 * 24 23 22 38 38 H 1.08999 * 109.46834 * 209.99866 * 24 23 22 39 39 H 1.08997 * 109.46609 * 329.99975 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2900 2.3750 0.0005 5 6 1.9156 3.6054 0.0054 6 6 3.3034 3.6788 0.0000 7 7 3.9380 4.9241 0.0005 8 6 3.1861 6.0851 0.0926 9 6 2.9676 6.8692 -1.0321 10 6 2.2232 8.0281 -0.9323 11 6 1.6810 8.4188 0.2859 12 6 1.8746 7.6647 1.4061 13 6 2.6299 6.4794 1.3335 14 6 2.8352 5.6945 2.4867 15 1 3.0293 4.6363 2.3923 16 6 2.7872 6.2865 3.7533 17 7 3.1499 7.5348 3.9066 18 14 2.2054 5.2954 5.2261 19 1 2.2470 6.1460 6.4427 20 1 0.8136 4.8334 4.9932 21 1 3.0927 4.1195 5.4131 22 6 4.0596 2.5132 -0.0001 23 6 3.4317 1.2835 -0.0002 24 6 4.2516 0.0190 -0.0008 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2115 2.3178 0.0014 29 1 1.3269 4.5108 0.0096 30 1 4.9045 4.9760 -0.0636 31 1 3.3838 6.5753 -1.9843 32 1 2.0607 8.6365 -1.8097 33 1 1.1010 9.3277 0.3465 34 1 1.4484 7.9771 2.3480 35 1 3.5488 8.0183 3.1662 36 1 5.1382 2.5691 0.0002 37 1 4.4498 -0.2861 1.0266 38 1 3.7023 -0.7699 -0.5146 39 1 5.1957 0.1986 -0.5150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174831783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:14 Heat of formation + Delta-G solvation = -0.549382 kcal Electronic energy + Delta-G solvation = -21785.808453 eV Core-core repulsion = 18657.707678 eV Total energy + Delta-G solvation = -3128.100775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.79504 -38.41510 -36.92820 -34.32978 -33.89257 -31.97318 -29.58490 -29.42414 -27.63382 -26.93896 -25.93038 -24.88214 -21.71935 -21.41973 -21.05506 -19.72261 -17.92614 -17.46897 -16.66383 -16.03174 -15.40633 -15.16777 -14.64434 -14.42368 -13.98942 -13.94512 -13.46871 -13.21903 -12.79832 -12.58174 -12.39684 -12.21194 -12.06378 -11.89045 -11.71176 -11.43928 -11.27330 -11.13222 -10.90376 -10.71724 -10.44000 -10.29040 -10.01204 -9.69386 -9.09480 -8.80029 -8.25028 -7.72324 -7.67088 -7.26864 -6.38896 -4.47751 1.88183 2.20273 2.65651 2.74591 3.13334 3.23862 3.33612 3.70976 3.96135 4.36029 4.45465 4.46540 5.20433 5.25453 5.33277 5.34675 5.39668 5.59666 5.69674 5.84452 5.92540 5.96398 6.05121 6.07423 6.18475 6.25548 6.40277 6.55023 6.74746 6.85537 6.98213 6.98676 7.04646 7.19523 7.28773 7.46623 7.67896 7.75270 7.85802 7.87379 8.07144 8.14745 8.44315 8.51656 8.76970 8.94862 9.91955 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.006238 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.974588 B = 4487.812404 C = 5442.695154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.324 6.324 3 C 0.047 3.953 4 C -0.155 4.155 5 C -0.141 4.141 6 C 0.213 3.787 7 N -0.664 5.664 8 C -0.003 4.003 9 C -0.074 4.074 10 C -0.257 4.257 11 C -0.081 4.081 12 C -0.212 4.212 13 C 0.100 3.900 14 C -0.502 4.502 15 H 0.082 0.918 16 C 0.044 3.956 17 N -0.783 5.783 18 Si 1.055 2.945 19 H -0.274 1.274 20 H -0.273 1.273 21 H -0.274 1.274 22 C -0.177 4.177 23 C -0.075 4.075 24 C -0.099 4.099 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.390 0.610 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.299 0.701 36 H 0.119 0.881 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 -9.524 -4.599 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.239 6.239 3 C 0.001 3.999 4 C -0.174 4.174 5 C -0.164 4.164 6 C 0.109 3.891 7 N -0.286 5.286 8 C -0.097 4.097 9 C -0.094 4.094 10 C -0.277 4.277 11 C -0.100 4.100 12 C -0.232 4.232 13 C 0.096 3.904 14 C -0.529 4.529 15 H 0.100 0.900 16 C -0.180 4.180 17 N -0.404 5.404 18 Si 0.879 3.121 19 H -0.198 1.198 20 H -0.198 1.198 21 H -0.199 1.199 22 C -0.200 4.200 23 C -0.076 4.076 24 C -0.156 4.156 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.225 0.775 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.817 -9.390 -2.951 10.009 hybrid contribution 0.360 0.335 -1.640 1.712 sum -1.457 -9.055 -4.591 10.256 Atomic orbital electron populations 1.22883 0.79735 1.02774 1.00995 1.85959 1.20140 1.27369 1.90395 1.18432 0.91502 0.83700 1.06233 1.20911 0.99105 0.91917 1.05509 1.20522 0.93068 0.97355 1.05456 1.17876 0.91797 0.85634 0.93811 1.41099 1.06891 1.01039 1.79568 1.17243 1.07070 0.91733 0.93639 1.20824 0.97526 0.95277 0.95793 1.20135 1.10238 1.00544 0.96798 1.20387 0.98451 0.97767 0.93393 1.20798 1.05437 0.99243 0.97716 1.17823 0.89337 0.91135 0.92152 1.20452 1.42898 0.98089 0.91487 0.89987 1.27008 0.92525 0.95979 1.02443 1.70486 1.22571 1.10035 1.37320 0.83777 0.77980 0.75777 0.74611 1.19846 1.19832 1.19944 1.20189 0.98775 0.90102 1.10899 1.18774 0.90356 0.94984 1.03471 1.20542 0.98453 0.94846 1.01754 0.93331 0.89166 0.93130 0.86334 0.85625 0.77514 0.89186 0.89266 0.89332 0.87920 0.88851 0.86271 0.91845 0.91644 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.02 9.53 -19.64 -0.19 -5.21 16 3 C 0.05 0.81 6.66 -39.20 -0.26 0.55 16 4 C -0.16 -2.78 9.03 -39.46 -0.36 -3.13 16 5 C -0.14 -2.87 8.87 -39.38 -0.35 -3.22 16 6 C 0.21 4.22 5.41 -83.71 -0.45 3.77 16 7 N -0.66 -13.55 4.85 -8.01 -0.04 -13.59 16 8 C 0.00 -0.07 4.58 -83.30 -0.38 -0.46 16 9 C -0.07 -1.61 9.96 -39.41 -0.39 -2.00 16 10 C -0.26 -5.52 10.03 -39.37 -0.40 -5.92 16 11 C -0.08 -1.82 9.96 -39.98 -0.40 -2.22 16 12 C -0.21 -5.20 8.12 -39.29 -0.32 -5.52 16 13 C 0.10 2.49 4.75 -106.63 -0.51 1.98 16 14 C -0.50 -12.76 8.30 -37.92 -0.31 -13.08 16 15 H 0.08 2.14 6.59 -52.49 -0.35 1.79 16 16 C 0.04 1.09 4.78 -17.33 -0.08 1.01 16 17 N -0.78 -20.06 12.38 55.55 0.69 -19.37 16 18 Si 1.06 21.61 30.03 -169.99 -5.10 16.51 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.18 -3.11 9.55 -39.38 -0.38 -3.48 16 23 C -0.07 -1.26 5.89 -104.50 -0.62 -1.88 16 24 C -0.10 -1.35 9.79 36.01 0.35 -0.99 16 25 H 0.05 0.52 7.66 -51.92 -0.40 0.13 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 28 H 0.12 1.85 6.29 -52.48 -0.33 1.52 16 29 H 0.13 2.79 6.72 -52.49 -0.35 2.44 16 30 H 0.39 7.19 8.83 -40.82 -0.36 6.83 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.10 2.61 6.72 -52.49 -0.35 2.25 16 35 H 0.30 7.85 7.23 -40.82 -0.30 7.55 16 36 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.86 7.52 -51.93 -0.39 0.47 16 39 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -27.03 325.45 -8.57 -35.60 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -4.98 Total: 14.38 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: -3.86 Total: -33.22 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.65 Total: -32.96 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.19 Total: -5.21 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.10 Total: 16.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.03 -8.57 -35.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174831783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.052 kcal (2) G-P(sol) polarization free energy of solvation -27.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds