Wall clock time and date at job start Tue Mar 31 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35995 * 117.00358 * 2 1 4 4 C 1.38726 * 119.97950 * 0.02562 * 3 2 1 5 5 C 1.38074 * 120.02238 * 179.97438 * 4 3 2 6 6 C 1.38903 * 119.97808 * 0.02562 * 5 4 3 7 7 N 1.39958 * 120.01727 * 180.02562 * 6 5 4 8 8 C 1.39700 * 119.99650 * 150.85533 * 7 6 5 9 9 C 1.39356 * 119.95422 * 330.75389 * 8 7 6 10 10 C 1.38475 * 120.42350 * 180.02562 * 9 8 7 11 11 C 1.37694 * 120.32347 * 0.02562 * 10 9 8 12 12 C 1.40752 * 119.90084 * 359.97438 * 11 10 9 13 13 C 1.41407 * 120.20837 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00117 * 151.62315 * 13 12 11 15 15 C 1.39930 * 120.00288 * 331.63254 * 13 12 11 16 16 N 1.30826 * 120.00250 * 162.82693 * 15 13 12 17 17 Si 1.86804 * 119.99638 * 342.82013 * 15 13 12 18 18 H 1.48501 * 109.46829 * 93.62294 * 17 15 13 19 19 H 1.48498 * 109.46901 * 213.62256 * 17 15 13 20 20 H 1.48506 * 109.47196 * 333.62224 * 17 15 13 21 21 C 1.38303 * 119.95308 * 150.78301 * 8 7 6 22 22 C 1.38859 * 119.95986 * 0.27328 * 6 5 4 23 23 C 1.38121 * 119.98018 * 359.43052 * 22 6 5 24 24 C 1.50698 * 119.99503 * 180.29307 * 23 22 6 25 25 H 1.08997 * 109.47065 * 300.00259 * 1 2 3 26 26 H 1.09005 * 109.46626 * 60.00035 * 1 2 3 27 27 H 1.08998 * 109.47454 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.98836 * 0.02562 * 4 3 2 29 29 H 1.08001 * 120.01367 * 180.02562 * 5 4 3 30 30 H 0.96995 * 119.99989 * 330.84739 * 7 6 5 31 31 H 1.08000 * 119.79330 * 0.05479 * 9 8 7 32 32 H 1.07997 * 119.83504 * 179.97438 * 10 9 8 33 33 H 1.08008 * 120.04447 * 180.02562 * 11 10 9 34 34 H 0.97000 * 119.99849 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.16148 * 0.25247 * 21 8 7 36 36 H 1.08004 * 120.01012 * 179.72313 * 22 6 5 37 37 H 1.08999 * 109.47001 * 270.28106 * 24 23 22 38 38 H 1.09006 * 109.46883 * 30.27463 * 24 23 22 39 39 H 1.08995 * 109.46897 * 150.27473 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2905 2.3749 0.0005 5 6 1.9165 3.6056 0.0011 6 6 3.3036 3.6787 0.0005 7 7 3.9390 4.9258 0.0016 8 6 5.1979 5.0677 0.5904 9 6 5.5649 4.2462 1.6546 10 6 6.8101 4.3788 2.2458 11 6 7.6996 5.3252 1.7884 12 6 7.3430 6.1622 0.7145 13 6 8.2516 7.1359 0.2392 14 1 8.2170 7.4481 -0.7941 15 6 9.1958 7.6948 1.1076 16 7 10.2356 8.3255 0.6253 17 14 8.9714 7.5406 2.9557 18 1 9.7073 6.3475 3.4457 19 1 9.5015 8.7573 3.6219 20 1 7.5271 7.3944 3.2685 21 6 6.0779 6.0237 0.1168 22 6 4.0594 2.5139 -0.0063 23 6 3.4315 1.2836 -0.0006 24 6 4.2515 0.0193 -0.0013 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2120 2.3179 0.0014 29 1 1.3279 4.5111 0.0019 30 1 3.5054 5.6914 -0.4065 31 1 4.8741 3.5009 2.0203 32 1 7.0845 3.7374 3.0702 33 1 8.6697 5.4245 2.2527 34 1 10.8898 8.7133 1.2273 35 1 5.7929 6.6640 -0.7048 36 1 5.1380 2.5698 -0.0112 37 1 4.4488 -0.2852 -1.0292 38 1 5.1962 0.1986 0.5122 39 1 3.7027 -0.7699 0.5125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174834615.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:17 Heat of formation + Delta-G solvation = 5.938435 kcal Electronic energy + Delta-G solvation = -21092.002365 eV Core-core repulsion = 17964.182923 eV Total energy + Delta-G solvation = -3127.819442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21588 -38.63147 -37.18108 -34.85178 -33.36401 -32.42682 -30.32525 -29.58706 -27.99742 -27.38568 -26.10093 -25.13306 -22.22305 -21.59349 -20.91106 -20.13255 -17.87873 -17.68331 -16.61690 -16.17694 -15.80670 -15.71817 -14.93918 -14.67217 -14.25034 -13.96811 -13.55453 -13.44236 -13.05482 -12.78875 -12.72103 -12.55299 -12.24950 -12.02269 -11.94056 -11.71011 -11.50087 -11.35134 -10.96195 -10.73801 -10.66238 -10.52783 -9.97594 -9.68158 -9.49736 -9.11790 -8.60353 -7.85241 -7.69103 -6.95742 -6.51075 -4.52087 1.47226 1.63349 2.61043 2.74501 3.12360 3.23076 3.33446 3.35396 3.87502 3.95317 3.99207 4.51555 4.84926 4.90715 5.03694 5.03847 5.31702 5.38457 5.43968 5.44848 5.65645 5.75714 5.80050 5.97109 6.04489 6.18444 6.26716 6.34777 6.42889 6.48833 6.59718 6.71635 6.79974 6.86449 6.99549 7.25004 7.43560 7.53209 7.62987 7.69190 7.88373 8.23491 8.26486 8.38311 8.65780 8.80813 10.06644 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036777 B = 0.003581 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.170562 B = 7818.225146 C = 8055.249123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.074 3.926 4 C -0.170 4.170 5 C -0.150 4.150 6 C 0.176 3.824 7 N -0.690 5.690 8 C 0.201 3.799 9 C -0.276 4.276 10 C -0.055 4.055 11 C -0.260 4.260 12 C 0.116 3.884 13 C -0.446 4.446 14 H 0.090 0.910 15 C 0.084 3.916 16 N -0.809 5.809 17 Si 0.917 3.083 18 H -0.270 1.270 19 H -0.294 1.294 20 H -0.244 1.244 21 C -0.250 4.250 22 C -0.124 4.124 23 C -0.082 4.082 24 C -0.104 4.104 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.401 0.599 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.285 0.715 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.008 -11.480 0.120 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.029 3.971 4 C -0.190 4.190 5 C -0.172 4.172 6 C 0.076 3.924 7 N -0.313 5.313 8 C 0.106 3.894 9 C -0.297 4.297 10 C -0.074 4.074 11 C -0.280 4.280 12 C 0.112 3.888 13 C -0.475 4.475 14 H 0.108 0.892 15 C -0.135 4.135 16 N -0.433 5.433 17 Si 0.744 3.256 18 H -0.197 1.197 19 H -0.222 1.222 20 H -0.168 1.168 21 C -0.273 4.273 22 C -0.146 4.146 23 C -0.083 4.083 24 C -0.161 4.161 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.236 0.764 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.157 0.843 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.594 -11.558 0.150 18.617 hybrid contribution -0.417 0.635 0.606 0.972 sum -15.011 -10.923 0.757 18.580 Atomic orbital electron populations 1.22943 0.79342 1.03274 1.00974 1.86032 1.20460 1.27074 1.89767 1.18605 0.91641 0.83916 1.02972 1.20863 0.99270 0.91792 1.07029 1.20532 0.92714 0.97404 1.06567 1.17681 0.90889 0.86082 0.97720 1.42155 1.18604 1.08009 1.62531 1.17496 0.83674 0.96333 0.91902 1.20186 0.99128 1.07963 1.02461 1.20410 0.93265 0.96535 0.97162 1.21007 1.00061 1.01957 1.04960 1.17471 0.90545 0.90886 0.89890 1.19482 1.10511 1.18526 0.98974 0.89242 1.26175 0.92453 0.92570 1.02290 1.69689 1.07611 1.27176 1.38843 0.86260 0.81411 0.76588 0.81329 1.19679 1.22182 1.16756 1.20614 0.94195 1.05748 1.06742 1.20875 1.00719 0.89741 1.03229 1.19043 0.90362 0.95600 1.03321 1.20605 0.98968 0.94390 1.02130 0.93085 0.93094 0.88784 0.85875 0.86107 0.76369 0.88355 0.88658 0.88226 0.90433 0.88121 0.84313 0.91528 0.91488 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.95 9.53 -19.73 -0.19 -4.14 16 3 C 0.07 1.02 6.66 -39.23 -0.26 0.76 16 4 C -0.17 -2.17 9.03 -39.46 -0.36 -2.53 16 5 C -0.15 -2.07 9.95 -39.40 -0.39 -2.46 16 6 C 0.18 2.83 5.95 -83.67 -0.50 2.33 16 7 N -0.69 -11.88 5.46 -8.42 -0.05 -11.93 16 8 C 0.20 4.17 5.95 -83.83 -0.50 3.67 16 9 C -0.28 -5.75 7.87 -39.08 -0.31 -6.06 16 10 C -0.05 -1.19 10.02 -39.69 -0.40 -1.58 16 11 C -0.26 -6.26 7.15 -38.83 -0.28 -6.53 16 12 C 0.12 2.92 5.15 -106.85 -0.55 2.37 16 13 C -0.45 -12.03 9.58 -37.74 -0.36 -12.40 16 14 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 15 C 0.08 2.20 5.43 -17.35 -0.09 2.11 16 16 N -0.81 -21.55 13.93 55.55 0.77 -20.78 16 17 Si 0.92 20.94 24.45 -169.99 -4.16 16.79 16 18 H -0.27 -6.00 6.62 56.52 0.37 -5.62 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.24 -5.73 6.84 56.52 0.39 -5.34 16 21 C -0.25 -5.75 9.69 -38.67 -0.37 -6.12 16 22 C -0.12 -2.02 7.50 -39.39 -0.30 -2.32 16 23 C -0.08 -1.21 5.89 -104.50 -0.62 -1.82 16 24 C -0.10 -1.30 9.79 36.00 0.35 -0.95 16 25 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 26 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.12 1.23 6.29 -52.48 -0.33 0.90 16 29 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.40 6.03 8.90 -40.82 -0.36 5.67 16 31 H 0.10 1.94 6.51 -52.49 -0.34 1.59 16 32 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.10 2.40 4.40 -52.48 -0.23 2.17 16 34 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 35 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.14 2.45 6.53 -52.48 -0.34 2.10 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -28.44 319.70 -7.66 -36.10 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -4.93 Total: 9.44 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -3.94 Total: -30.30 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.73 Total: -32.71 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.19 Total: -4.14 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.16 Total: 16.79 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.44 -7.66 -36.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174834615.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.039 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds