Wall clock time and date at job start Tue Mar 31 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35890 * 117.00377 * 2 1 4 4 C 1.38598 * 120.01556 * 0.02562 * 3 2 1 5 5 C 1.38859 * 119.86763 * 179.97438 * 4 3 2 6 6 N 1.39587 * 120.05174 * 179.97438 * 5 4 3 7 7 C 1.38809 * 119.99869 * 155.60137 * 6 5 4 8 8 C 1.39608 * 119.84899 * 327.24189 * 7 6 5 9 9 C 1.36313 * 120.16079 * 179.71554 * 8 7 6 10 10 C 1.40900 * 119.83424 * 0.58133 * 9 8 7 11 11 C 1.41111 * 120.14625 * 179.67527 * 10 9 8 12 12 H 1.08004 * 119.99566 * 207.44602 * 11 10 9 13 13 C 1.39838 * 120.00419 * 27.44662 * 11 10 9 14 14 N 1.30909 * 119.99912 * 12.71888 * 13 11 10 15 15 Si 1.86797 * 120.00250 * 192.72302 * 13 11 10 16 16 H 1.48495 * 109.47358 * 89.99553 * 15 13 11 17 17 H 1.48497 * 109.47364 * 209.99716 * 15 13 11 18 18 H 1.48508 * 109.47090 * 329.99620 * 15 13 11 19 19 C 1.40905 * 119.69962 * 359.69657 * 10 9 8 20 20 C 1.36313 * 119.83605 * 0.02562 * 19 10 9 21 21 C 1.39023 * 119.89618 * 0.02562 * 5 4 3 22 22 C 1.38100 * 120.03057 * 359.97438 * 21 5 4 23 23 C 1.38229 * 120.13550 * 0.02562 * 22 21 5 24 24 C 1.50702 * 119.95121 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.46941 * 300.00100 * 1 2 3 26 26 H 1.09000 * 109.47296 * 59.99817 * 1 2 3 27 27 H 1.08999 * 109.47674 * 179.97438 * 1 2 3 28 28 H 1.08005 * 120.06206 * 359.70079 * 4 3 2 29 29 H 0.97003 * 120.00172 * 335.60556 * 6 5 4 30 30 H 1.07998 * 119.91580 * 359.97438 * 8 7 6 31 31 H 1.07993 * 120.07981 * 180.25673 * 9 8 7 32 32 H 0.97008 * 120.00280 * 180.02562 * 14 13 11 33 33 H 1.07992 * 120.07749 * 179.97438 * 19 10 9 34 34 H 1.07997 * 119.92045 * 180.02562 * 20 19 10 35 35 H 1.08003 * 119.98953 * 179.97438 * 21 5 4 36 36 H 1.08005 * 119.92890 * 179.97438 * 22 21 5 37 37 H 1.08992 * 109.47440 * 270.02258 * 24 23 22 38 38 H 1.09006 * 109.46639 * 30.01959 * 24 23 22 39 39 H 1.08996 * 109.47093 * 150.01972 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2915 2.3734 0.0005 5 6 1.9252 3.6089 0.0011 6 7 1.1691 4.7823 0.0011 7 6 1.7133 5.9586 0.4981 8 6 2.6253 5.9104 1.5541 9 6 3.1680 7.0612 2.0433 10 6 2.7970 8.3022 1.4888 11 6 3.3496 9.4980 1.9947 12 1 2.7958 10.4223 1.9208 13 6 4.6141 9.4864 2.5917 14 7 5.3885 8.4387 2.4641 15 14 5.1981 10.9657 3.5714 16 1 4.7992 10.8069 4.9929 17 1 6.6769 11.0671 3.4807 18 1 4.5826 12.1994 3.0194 19 6 1.8716 8.3438 0.4271 20 6 1.3411 7.1847 -0.0560 21 6 3.3138 3.6755 0.0005 22 6 4.0614 2.5144 0.0000 23 6 3.4320 1.2837 -0.0005 24 6 4.2519 0.0192 -0.0017 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2129 2.3184 -0.0039 29 1 0.2634 4.7757 -0.3462 30 1 2.9047 4.9588 1.9815 31 1 3.8765 7.0221 2.8574 32 1 6.2656 8.4304 2.8785 33 1 1.5826 9.2917 -0.0022 34 1 0.6320 7.2150 -0.8700 35 1 3.8083 4.6357 0.0005 36 1 5.1402 2.5680 -0.0008 37 1 4.4494 -0.2848 -1.0296 38 1 5.1964 0.1982 0.5122 39 1 3.7029 -0.7702 0.5115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175016266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:20 Heat of formation + Delta-G solvation = 4.957332 kcal Electronic energy + Delta-G solvation = -21077.225105 eV Core-core repulsion = 17949.363119 eV Total energy + Delta-G solvation = -3127.861986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.08777 -38.49253 -37.02803 -35.11730 -33.30572 -31.23704 -30.08780 -29.43063 -28.71426 -27.49050 -25.76237 -24.38154 -22.15493 -21.25509 -20.92236 -20.18355 -17.70869 -17.35751 -16.83958 -15.71676 -15.56125 -15.33482 -15.01614 -14.92475 -14.00502 -13.75357 -13.40057 -13.30203 -13.15424 -12.79833 -12.27378 -12.13107 -12.01603 -11.82082 -11.78473 -11.60983 -11.22623 -11.10733 -10.94589 -10.86436 -10.75918 -10.51584 -9.94457 -9.78489 -9.37777 -9.06518 -8.21841 -7.69413 -7.56419 -6.76576 -6.51250 -4.29139 1.74207 1.86232 2.75948 2.98772 3.06957 3.09912 3.17812 3.40809 3.92365 4.06099 4.17016 4.63247 5.03293 5.12801 5.14067 5.33653 5.40285 5.55605 5.62770 5.67307 5.82892 5.88523 5.96432 6.04018 6.12306 6.22471 6.30947 6.56841 6.75898 6.84217 6.89476 6.98793 7.02317 7.11061 7.20629 7.41503 7.53844 7.60952 7.75574 7.98971 8.13317 8.30330 8.43611 8.60012 8.86310 8.94096 10.19846 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027314 B = 0.003688 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.863128 B = 7590.178863 C = 8323.772959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.157 3.843 4 C -0.281 4.281 5 C 0.244 3.756 6 N -0.671 5.671 7 C 0.025 3.975 8 C -0.121 4.121 9 C -0.139 4.139 10 C 0.098 3.902 11 C -0.460 4.460 12 H 0.077 0.923 13 C 0.073 3.927 14 N -0.799 5.799 15 Si 0.910 3.090 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.205 4.205 20 C -0.118 4.118 21 C -0.201 4.201 22 C -0.046 4.046 23 C -0.181 4.181 24 C -0.091 4.091 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.394 0.606 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.280 0.720 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.764 -11.871 -3.220 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.112 3.888 4 C -0.304 4.304 5 C 0.140 3.860 6 N -0.290 5.290 7 C -0.069 4.069 8 C -0.141 4.141 9 C -0.159 4.159 10 C 0.095 3.905 11 C -0.490 4.490 12 H 0.095 0.905 13 C -0.144 4.144 14 N -0.425 5.425 15 Si 0.735 3.265 16 H -0.194 1.194 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.225 4.225 20 C -0.139 4.139 21 C -0.223 4.223 22 C -0.065 4.065 23 C -0.183 4.183 24 C -0.148 4.148 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.139 0.861 29 H 0.228 0.772 30 H 0.113 0.887 31 H 0.141 0.859 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.352 -12.016 -3.094 13.149 hybrid contribution -0.349 0.892 0.246 0.989 sum -4.701 -11.124 -2.849 12.408 Atomic orbital electron populations 1.22966 0.79117 1.03195 1.01302 1.86016 1.20768 1.27380 1.88954 1.18427 0.91415 0.83199 0.95769 1.20592 0.99228 0.91162 1.19420 1.17542 0.90955 0.85571 0.91946 1.41664 1.15250 1.05786 1.66339 1.17185 1.05459 0.84194 1.00088 1.20418 0.99580 0.97959 0.96190 1.21017 1.02108 0.91256 1.01539 1.17641 0.90090 0.93324 0.89447 1.19509 1.00853 0.95487 1.33113 0.90527 1.25880 0.96459 0.97382 0.94680 1.69823 1.08577 1.29326 1.34797 0.86277 0.78074 0.81723 0.80424 1.19359 1.20314 1.18714 1.20607 1.05431 0.95776 1.00656 1.20068 1.02163 0.92070 0.99576 1.21008 0.92275 0.99465 1.09556 1.20627 0.99265 0.90574 0.96065 1.18923 0.90252 0.95824 1.13323 1.20422 0.98433 0.94717 1.01242 0.92839 0.92952 0.88785 0.86150 0.77204 0.88676 0.85910 0.90908 0.88670 0.89265 0.84830 0.85784 0.92519 0.92368 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.32 9.53 -19.39 -0.18 -4.51 16 3 C 0.16 2.43 6.66 -39.24 -0.26 2.16 16 4 C -0.28 -4.38 8.93 -39.22 -0.35 -4.73 16 5 C 0.24 4.32 6.06 -83.81 -0.51 3.81 16 6 N -0.67 -12.11 5.42 -8.32 -0.05 -12.16 16 7 C 0.02 0.53 5.91 -83.68 -0.49 0.03 16 8 C -0.12 -2.79 7.63 -39.76 -0.30 -3.09 16 9 C -0.14 -3.54 8.61 -39.27 -0.34 -3.87 16 10 C 0.10 2.54 5.56 -106.79 -0.59 1.94 16 11 C -0.46 -11.94 9.04 -37.89 -0.34 -12.29 16 12 H 0.08 1.91 7.88 -52.48 -0.41 1.50 16 13 C 0.07 1.80 5.22 -17.35 -0.09 1.71 16 14 N -0.80 -20.35 10.85 55.54 0.60 -19.75 16 15 Si 0.91 18.49 29.58 -169.99 -5.03 13.46 16 16 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 19 C -0.20 -4.86 9.74 -39.27 -0.38 -5.24 16 20 C -0.12 -2.55 9.89 -39.76 -0.39 -2.95 16 21 C -0.20 -3.68 7.86 -39.34 -0.31 -3.99 16 22 C -0.05 -0.74 9.69 -39.64 -0.38 -1.13 16 23 C -0.18 -2.77 5.90 -104.42 -0.62 -3.39 16 24 C -0.09 -1.14 9.79 36.01 0.35 -0.79 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.12 1.61 6.30 -52.48 -0.33 1.28 16 29 H 0.39 6.07 8.88 -40.82 -0.36 5.71 16 30 H 0.10 2.12 6.59 -52.49 -0.35 1.78 16 31 H 0.12 3.24 6.18 -52.49 -0.32 2.92 16 32 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 33 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.13 2.74 6.27 -52.48 -0.33 2.41 16 36 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 39 H 0.06 0.75 7.52 -51.93 -0.39 0.36 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -27.57 324.73 -8.74 -36.31 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -4.96 Total: 12.28 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -4.02 Total: -30.53 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.56 Total: -31.90 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.18 Total: -4.51 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.57 -8.74 -36.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175016266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.266 kcal (2) G-P(sol) polarization free energy of solvation -27.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds