Wall clock time and date at job start Tue Mar 31 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35896 * 117.00282 * 2 1 4 4 C 1.38609 * 120.01593 * 0.02562 * 3 2 1 5 5 C 1.38808 * 119.87135 * 180.02562 * 4 3 2 6 6 N 1.39710 * 120.05003 * 180.02562 * 5 4 3 7 7 C 1.39723 * 120.00189 * 149.83344 * 6 5 4 8 8 C 1.39353 * 119.94909 * 330.19857 * 7 6 5 9 9 C 1.38475 * 120.41963 * 179.97438 * 8 7 6 10 10 C 1.37695 * 120.32741 * 0.04447 * 9 8 7 11 11 C 1.40758 * 119.89557 * 359.97438 * 10 9 8 12 12 C 1.41405 * 120.20751 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00084 * 154.67306 * 12 11 10 14 14 C 1.39930 * 119.99753 * 334.67336 * 12 11 10 15 15 N 1.30835 * 120.00108 * 340.84610 * 14 12 11 16 16 Si 1.86804 * 119.99863 * 160.85433 * 14 12 11 17 17 H 1.48495 * 109.47137 * 94.98222 * 16 14 12 18 18 H 1.48499 * 109.46860 * 214.98269 * 16 14 12 19 19 H 1.48499 * 109.46896 * 334.97730 * 16 14 12 20 20 C 1.38294 * 119.95238 * 150.22552 * 7 6 5 21 21 C 1.38990 * 119.90251 * 0.26987 * 5 4 3 22 22 C 1.38114 * 120.03455 * 359.45218 * 21 5 4 23 23 C 1.38224 * 120.12532 * 0.55013 * 22 21 5 24 24 C 1.50698 * 119.94893 * 179.69888 * 23 22 21 25 25 H 1.09004 * 109.46601 * 299.99870 * 1 2 3 26 26 H 1.08996 * 109.47128 * 59.99610 * 1 2 3 27 27 H 1.09001 * 109.47496 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.06569 * 0.03966 * 4 3 2 29 29 H 0.96997 * 119.99518 * 329.82158 * 6 5 4 30 30 H 1.07998 * 119.79009 * 0.02801 * 8 7 6 31 31 H 1.07998 * 119.83531 * 180.02562 * 9 8 7 32 32 H 1.08000 * 120.05504 * 179.97438 * 10 9 8 33 33 H 0.96994 * 120.00004 * 180.02562 * 15 14 12 34 34 H 1.07998 * 120.16197 * 0.27451 * 20 7 6 35 35 H 1.08002 * 119.98284 * 179.72845 * 21 5 4 36 36 H 1.07997 * 119.93664 * 180.25393 * 22 21 5 37 37 H 1.08999 * 109.47503 * 270.02634 * 24 23 22 38 38 H 1.09007 * 109.47154 * 30.02565 * 24 23 22 39 39 H 1.09002 * 109.47030 * 150.01790 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3735 0.0005 5 6 1.9249 3.6087 0.0000 6 7 1.1680 4.7830 0.0011 7 6 1.6695 5.9369 0.6087 8 6 2.5390 5.8306 1.6925 9 6 3.0423 6.9678 2.3018 10 6 2.6880 8.2169 1.8433 11 6 1.8104 8.3400 0.7498 12 6 1.4417 9.6195 0.2739 13 1 1.1311 9.7449 -0.7529 14 6 1.4792 10.7231 1.1333 15 7 1.4831 10.5432 2.4292 16 14 1.5236 12.4533 0.4304 17 1 0.1434 12.9972 0.3666 18 1 2.3576 13.3201 1.3012 19 1 2.1054 12.4178 -0.9355 20 6 1.3019 7.1827 0.1341 21 6 3.3131 3.6755 -0.0068 22 6 4.0611 2.5145 -0.0015 23 6 3.4318 1.2838 -0.0010 24 6 4.2519 0.0195 -0.0021 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.2129 2.3186 0.0016 29 1 0.2944 4.7973 -0.4202 30 1 2.8228 4.8552 2.0591 31 1 3.7158 6.8744 3.1408 32 1 3.0828 9.1008 2.3220 33 1 1.5088 11.3082 3.0250 34 1 0.6243 7.2663 -0.7027 35 1 3.8072 4.6359 -0.0116 36 1 5.1398 2.5683 -0.0026 37 1 4.4489 -0.2850 -1.0300 38 1 5.1967 0.1988 0.5112 39 1 3.7033 -0.7698 0.5120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175017780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:21 Heat of formation + Delta-G solvation = -11.604417 kcal Electronic energy + Delta-G solvation = -20958.936255 eV Core-core repulsion = 17830.356098 eV Total energy + Delta-G solvation = -3128.580157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34116 -39.93586 -38.41682 -36.58697 -35.10093 -32.68500 -31.80886 -31.08658 -29.57255 -28.35926 -27.21574 -26.45043 -23.47471 -22.86923 -22.43555 -21.78783 -19.51678 -18.76059 -17.79598 -17.23974 -16.73354 -16.63618 -16.43954 -16.33414 -16.02585 -15.18117 -14.80240 -14.60251 -14.50782 -14.27773 -14.06271 -13.77358 -13.26097 -13.11061 -12.96413 -12.83864 -12.77795 -12.55093 -12.28747 -12.22412 -12.08979 -12.00002 -11.71596 -11.43635 -11.16561 -10.81233 -9.62544 -9.40890 -9.12404 -8.66233 -8.00127 -6.36733 0.38197 0.52232 0.97912 1.23501 1.39082 1.50545 1.56025 2.20894 2.35778 2.54435 2.71058 2.88198 3.74427 3.91833 4.08641 4.28445 4.31727 4.39653 4.40697 4.45405 4.61241 4.67445 4.68797 4.75765 4.87263 4.94977 5.03263 5.08164 5.13645 5.19996 5.29419 5.38612 5.44260 5.57518 5.65538 5.79206 5.89387 5.98608 6.11441 6.19853 6.45017 6.54334 6.76770 6.86115 6.94297 7.07521 8.32542 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.003308 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.392255 B = 8461.200344 C = 8793.168640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.323 6.323 3 C 0.149 3.851 4 C -0.264 4.264 5 C 0.215 3.785 6 N -0.686 5.686 7 C 0.199 3.801 8 C -0.267 4.267 9 C -0.082 4.082 10 C -0.209 4.209 11 C 0.106 3.894 12 C -0.502 4.502 13 H 0.075 0.925 14 C 0.039 3.961 15 N -0.821 5.821 16 Si 0.980 3.020 17 H -0.262 1.262 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.280 4.280 21 C -0.208 4.208 22 C -0.051 4.051 23 C -0.171 4.171 24 C -0.091 4.091 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.124 0.876 28 H 0.140 0.860 29 H 0.408 0.592 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.289 0.711 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.149 0.851 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.706 -15.804 -3.787 16.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.236 6.236 3 C 0.103 3.897 4 C -0.286 4.286 5 C 0.115 3.885 6 N -0.309 5.309 7 C 0.104 3.896 8 C -0.288 4.288 9 C -0.101 4.101 10 C -0.229 4.229 11 C 0.103 3.897 12 C -0.531 4.531 13 H 0.093 0.907 14 C -0.177 4.177 15 N -0.446 5.446 16 Si 0.801 3.199 17 H -0.187 1.187 18 H -0.189 1.189 19 H -0.183 1.183 20 C -0.302 4.302 21 C -0.230 4.230 22 C -0.069 4.069 23 C -0.173 4.173 24 C -0.148 4.148 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.142 0.858 28 H 0.158 0.842 29 H 0.245 0.755 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.167 0.833 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.847 -15.857 -3.500 16.261 hybrid contribution -0.865 1.342 -0.201 1.609 sum -0.018 -14.515 -3.701 14.979 Atomic orbital electron populations 1.23300 0.76971 1.05466 1.01811 1.86027 1.22906 1.26147 1.88514 1.18632 0.91906 0.83783 0.95384 1.20884 1.00559 0.90584 1.16610 1.17657 0.91026 0.85544 0.94269 1.42074 1.20636 1.07115 1.61061 1.17415 0.95383 0.85128 0.91707 1.20316 1.09910 0.97407 1.01215 1.20750 0.98665 0.92391 0.98330 1.21169 1.03263 0.96080 1.02361 1.17697 0.88476 0.92692 0.90791 1.19795 1.42148 0.92877 0.98279 0.90707 1.26740 0.91035 1.05448 0.94464 1.69894 1.34997 1.35032 1.04712 0.85225 0.79376 0.75856 0.79451 1.18700 1.18947 1.18322 1.20746 1.11094 0.91321 1.07087 1.20988 0.92579 0.99375 1.10045 1.20878 1.00444 0.89914 0.95692 1.19408 0.90726 0.96878 1.10261 1.20504 0.98702 0.93156 1.02437 0.92588 0.92159 0.85819 0.84231 0.75542 0.87605 0.86992 0.88325 0.90049 0.88507 0.87083 0.83316 0.91151 0.90640 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.32 -7.51 9.53 -92.38 -0.88 -8.39 16 3 C 0.15 4.04 6.65 22.49 0.15 4.19 16 4 C -0.26 -7.56 8.94 22.49 0.20 -7.36 16 5 C 0.21 7.23 5.91 38.20 0.23 7.45 16 6 N -0.69 -25.09 5.45 -180.70 -0.98 -26.08 16 7 C 0.20 8.90 5.92 38.16 0.23 9.13 16 8 C -0.27 -11.99 7.93 22.59 0.18 -11.81 16 9 C -0.08 -3.91 10.02 22.20 0.22 -3.68 16 10 C -0.21 -11.13 8.69 22.76 0.20 -10.93 16 11 C 0.11 5.82 5.56 -21.31 -0.12 5.70 16 12 C -0.50 -27.30 9.04 23.46 0.21 -27.09 16 13 H 0.07 3.94 7.92 -2.91 -0.02 3.91 16 14 C 0.04 1.96 5.10 85.25 0.43 2.40 16 15 N -0.82 -43.10 11.10 21.82 0.24 -42.86 16 16 Si 0.98 38.16 29.60 68.60 2.03 40.20 16 17 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 18 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 20 C -0.28 -13.91 9.69 22.86 0.22 -13.69 16 21 C -0.21 -6.97 7.90 22.42 0.18 -6.79 16 22 C -0.05 -1.39 9.69 22.24 0.22 -1.18 16 23 C -0.17 -4.45 5.90 -19.74 -0.12 -4.57 16 24 C -0.09 -1.80 9.79 71.24 0.70 -1.10 16 25 H 0.06 0.88 7.66 -2.38 -0.02 0.87 16 26 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 27 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.14 3.42 6.30 -2.91 -0.02 3.40 16 29 H 0.41 13.11 8.90 -92.71 -0.83 12.29 16 30 H 0.11 4.45 6.59 -2.91 -0.02 4.43 16 31 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 32 H 0.10 5.47 6.27 -2.91 -0.02 5.45 16 33 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 34 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 35 H 0.11 4.16 6.64 -2.91 -0.02 4.14 16 36 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.25 8.09 -2.38 -0.02 1.23 16 39 H 0.06 1.26 7.52 -2.39 -0.02 1.25 16 Total: -1.00 -61.74 325.81 4.89 -56.86 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: 0.25 Total: 38.20 kcal Atomic # 6 Polarization: -62.15 SS G_CDS: 4.24 Total: -57.92 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -0.74 Total: -68.94 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.88 Total: -8.39 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.20 kcal Total: -61.74 4.89 -56.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175017780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.251 kcal (2) G-P(sol) polarization free energy of solvation -61.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds