Wall clock time and date at job start Tue Mar 31 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99975 * 2 1 4 4 C 1.38591 * 120.01743 * 0.31749 * 3 2 1 5 5 C 1.38856 * 119.86837 * 180.25488 * 4 3 2 6 6 N 1.39588 * 120.05479 * 179.72161 * 5 4 3 7 7 C 1.38683 * 119.99849 * 314.56774 * 6 5 4 8 8 C 1.38801 * 120.30064 * 352.54555 * 7 6 5 9 9 C 1.38122 * 120.02563 * 179.97438 * 8 7 6 10 10 C 1.38932 * 120.63077 * 359.97438 * 9 8 7 11 11 C 1.36433 * 120.60628 * 0.02562 * 10 9 8 12 12 C 1.40740 * 119.95073 * 359.97438 * 11 10 9 13 13 C 1.41013 * 120.30931 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00379 * 158.90849 * 13 12 11 15 15 C 1.39918 * 119.99727 * 338.90326 * 13 12 11 16 16 N 1.30890 * 120.00020 * 337.37765 * 15 13 12 17 17 Si 1.86795 * 119.99843 * 157.37817 * 15 13 12 18 18 H 1.48505 * 109.47205 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47169 * 120.00370 * 17 15 13 20 20 H 1.48504 * 109.47115 * 240.00085 * 17 15 13 21 21 C 1.39040 * 119.89487 * 359.44695 * 5 4 3 22 22 C 1.38094 * 120.02647 * 0.26124 * 21 5 4 23 23 C 1.38232 * 120.13659 * 0.02562 * 22 21 5 24 24 C 1.50702 * 119.94843 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47355 * 300.00474 * 1 2 3 26 26 H 1.09002 * 109.46899 * 60.00282 * 1 2 3 27 27 H 1.08999 * 109.47454 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.06807 * 359.97427 * 4 3 2 29 29 H 0.96995 * 119.99628 * 134.56734 * 6 5 4 30 30 H 1.08001 * 119.99242 * 0.24756 * 8 7 6 31 31 H 1.07999 * 119.68724 * 179.97438 * 9 8 7 32 32 H 1.08000 * 119.70033 * 180.02562 * 10 9 8 33 33 H 1.07998 * 120.02057 * 180.02562 * 11 10 9 34 34 H 0.96996 * 119.99949 * 179.97438 * 16 15 13 35 35 H 1.07996 * 119.98575 * 180.27010 * 21 5 4 36 36 H 1.07999 * 119.93024 * 180.02562 * 22 21 5 37 37 H 1.08996 * 109.46608 * 90.00722 * 24 23 22 38 38 H 1.08998 * 109.47394 * 210.00600 * 24 23 22 39 39 H 1.08996 * 109.47105 * 330.00957 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2915 2.3734 0.0066 5 6 1.9250 3.6090 0.0013 6 7 1.1689 4.7823 0.0021 7 6 0.0812 4.9068 -0.8491 8 6 -0.1704 3.9377 -1.8104 9 6 -1.2557 4.0671 -2.6549 10 6 -2.1049 5.1620 -2.5535 11 6 -1.8819 6.1298 -1.6180 12 6 -0.7834 6.0230 -0.7447 13 6 -0.5454 7.0191 0.2247 14 1 0.0573 6.7953 1.0924 15 6 -1.0902 8.2976 0.0622 16 7 -1.4265 8.7190 -1.1305 17 14 -1.3375 9.4031 1.5475 18 1 -0.8811 8.6969 2.7716 19 1 -0.5509 10.6504 1.3727 20 1 -2.7777 9.7405 1.6792 21 6 3.3138 3.6756 0.0009 22 6 4.0614 2.5145 0.0004 23 6 3.4319 1.2838 -0.0003 24 6 4.2519 0.0194 -0.0002 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2129 2.3185 0.0114 29 1 1.4044 5.5105 0.5980 30 1 0.4802 3.0798 -1.8953 31 1 -1.4460 3.3100 -3.4012 32 1 -2.9493 5.2479 -3.2212 33 1 -2.5483 6.9767 -1.5472 34 1 -1.8045 9.6052 -1.2430 35 1 3.8081 4.6358 0.0011 36 1 5.1400 2.5681 0.0005 37 1 4.4489 -0.2857 1.0274 38 1 3.7032 -0.7695 -0.5146 39 1 5.1965 0.1990 -0.5134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175017812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:25 Heat of formation + Delta-G solvation = 6.998052 kcal Electronic energy + Delta-G solvation = -21599.701177 eV Core-core repulsion = 18471.927684 eV Total energy + Delta-G solvation = -3127.773494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.09453 -38.33159 -37.03766 -34.73819 -33.68637 -31.39754 -30.00770 -29.46111 -28.20384 -27.36008 -25.57997 -24.88013 -22.06621 -21.46518 -20.73409 -20.04892 -17.63152 -17.36353 -16.48033 -15.83311 -15.53262 -15.26090 -15.02922 -14.93159 -14.06758 -13.76037 -13.42467 -13.29206 -12.79843 -12.73085 -12.61344 -12.31728 -11.91245 -11.77816 -11.68370 -11.48378 -11.19288 -11.13516 -11.02752 -10.80278 -10.76019 -10.50647 -9.72857 -9.63205 -9.51861 -9.17363 -8.20855 -7.73822 -7.51604 -6.90146 -6.37579 -4.27049 1.69819 1.80557 2.73106 3.03363 3.07290 3.08880 3.17951 3.50204 3.87372 4.10651 4.28738 4.57561 5.13424 5.24215 5.29471 5.35309 5.50711 5.56195 5.65516 5.72287 5.83674 5.84552 5.92684 6.01850 6.19980 6.30126 6.39056 6.53327 6.60148 6.81823 6.83057 6.93085 7.03327 7.11547 7.17398 7.38637 7.59835 7.65400 7.74359 8.08764 8.10446 8.33246 8.57567 8.66001 8.84030 8.96862 10.10425 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.004761 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.738163 B = 5880.081366 C = 6626.307617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.147 3.853 4 C -0.241 4.241 5 C 0.230 3.770 6 N -0.673 5.673 7 C 0.068 3.932 8 C -0.150 4.150 9 C -0.212 4.212 10 C -0.129 4.129 11 C -0.149 4.149 12 C 0.083 3.917 13 C -0.466 4.466 14 H 0.074 0.926 15 C 0.080 3.920 16 N -0.786 5.786 17 Si 0.902 3.098 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.271 1.271 21 C -0.201 4.201 22 C -0.058 4.058 23 C -0.166 4.166 24 C -0.093 4.093 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.407 0.593 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.280 0.720 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.239 -9.917 2.899 11.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.102 3.898 4 C -0.263 4.263 5 C 0.129 3.871 6 N -0.296 5.296 7 C -0.028 4.028 8 C -0.171 4.171 9 C -0.232 4.232 10 C -0.148 4.148 11 C -0.169 4.169 12 C 0.078 3.922 13 C -0.496 4.496 14 H 0.092 0.908 15 C -0.138 4.138 16 N -0.411 5.411 17 Si 0.727 3.273 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.197 1.197 21 C -0.223 4.223 22 C -0.077 4.077 23 C -0.168 4.168 24 C -0.150 4.150 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.151 0.849 29 H 0.244 0.756 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.170 -9.936 2.700 11.522 hybrid contribution -0.412 1.171 0.725 1.438 sum 4.759 -8.765 3.425 10.545 Atomic orbital electron populations 1.23024 0.78595 1.03254 1.01939 1.85991 1.21164 1.27163 1.88871 1.18576 0.91440 0.83644 0.96173 1.21210 1.00604 0.91277 1.13256 1.17465 0.89964 0.86547 0.93103 1.41644 1.30133 1.15100 1.42760 1.17775 0.90644 0.99436 0.94945 1.20376 0.99620 0.99169 0.97964 1.20151 0.99581 1.00123 1.03297 1.20356 0.99173 0.95600 0.99711 1.20835 0.98496 0.99337 0.98236 1.17244 0.90176 0.91025 0.93717 1.19213 1.29362 0.94654 1.06321 0.90780 1.25818 0.93141 0.98472 0.96382 1.69882 1.30306 1.18336 1.22551 0.86360 0.78985 0.79610 0.82384 1.18441 1.20035 1.19658 1.20933 0.92535 0.98638 1.10193 1.20537 0.98962 0.90718 0.97510 1.18977 0.90366 0.95810 1.11645 1.20451 0.98357 0.94820 1.01375 0.92718 0.92346 0.88702 0.84883 0.75593 0.88423 0.89509 0.89605 0.86322 0.90869 0.86148 0.85910 0.92349 0.91829 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.75 9.53 -19.42 -0.19 -4.94 16 3 C 0.15 2.41 6.65 -39.25 -0.26 2.15 16 4 C -0.24 -4.31 6.42 -39.22 -0.25 -4.57 16 5 C 0.23 4.30 5.73 -83.80 -0.48 3.82 16 6 N -0.67 -14.02 5.35 -8.06 -0.04 -14.06 16 7 C 0.07 1.61 6.45 -83.29 -0.54 1.08 16 8 C -0.15 -3.40 8.17 -39.42 -0.32 -3.72 16 9 C -0.21 -4.75 10.03 -39.37 -0.40 -5.15 16 10 C -0.13 -3.02 9.97 -39.98 -0.40 -3.42 16 11 C -0.15 -3.80 8.68 -39.29 -0.34 -4.14 16 12 C 0.08 2.12 5.61 -106.63 -0.60 1.52 16 13 C -0.47 -11.72 8.52 -37.90 -0.32 -12.04 16 14 H 0.07 1.77 6.69 -52.49 -0.35 1.42 16 15 C 0.08 1.95 5.06 -17.32 -0.09 1.86 16 16 N -0.79 -19.73 11.03 55.55 0.61 -19.12 16 17 Si 0.90 18.08 29.61 -169.99 -5.03 13.05 16 18 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 C -0.20 -3.30 9.97 -39.34 -0.39 -3.69 16 22 C -0.06 -0.84 9.69 -39.64 -0.38 -1.23 16 23 C -0.17 -2.48 5.90 -104.42 -0.62 -3.09 16 24 C -0.09 -1.12 9.79 36.01 0.35 -0.76 16 25 H 0.05 0.66 7.65 -51.93 -0.40 0.27 16 26 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.13 2.46 5.23 -52.49 -0.27 2.19 16 29 H 0.41 8.21 7.06 -40.82 -0.29 7.92 16 30 H 0.10 2.09 5.55 -52.49 -0.29 1.80 16 31 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.12 3.11 6.09 -52.49 -0.32 2.80 16 34 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 35 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.77 7.53 -51.93 -0.39 0.38 16 39 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 LS Contribution 321.65 15.07 4.85 4.85 Total: -1.00 -27.36 321.65 -8.65 -36.00 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -4.80 Total: 14.27 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -4.04 Total: -30.05 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.57 Total: -33.18 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.19 Total: -4.94 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.36 -8.65 -36.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175017812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.003 kcal (2) G-P(sol) polarization free energy of solvation -27.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds