Wall clock time and date at job start Tue Mar 31 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39719 * 119.99178 * 215.55460 * 3 2 1 5 5 C 1.37604 * 120.00207 * 180.02562 * 4 3 2 6 6 C 1.39742 * 119.99558 * 359.97438 * 5 4 3 7 7 C 1.47687 * 120.00010 * 180.02562 * 6 5 4 8 8 O 1.21566 * 120.00539 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99416 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99442 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.41218 * 35.14842 * 10 9 7 12 12 C 1.52964 * 109.40957 * 155.00299 * 10 9 7 13 13 C 1.53228 * 109.40257 * 183.70201 * 12 10 9 14 14 C 1.51259 * 108.53949 * 305.37555 * 13 12 10 15 15 C 1.37885 * 120.84832 * 231.32301 * 14 13 12 16 16 N 1.31514 * 120.00035 * 359.97438 * 15 14 13 17 17 Si 1.86803 * 119.99853 * 179.97438 * 15 14 13 18 18 H 1.48500 * 109.46986 * 90.00256 * 17 15 14 19 19 H 1.48496 * 109.47029 * 210.00273 * 17 15 14 20 20 H 1.48499 * 109.47352 * 330.00102 * 17 15 14 21 21 C 1.51270 * 118.30426 * 51.59625 * 14 13 12 22 22 C 1.52959 * 109.41566 * 275.35226 * 10 9 7 23 23 C 1.39739 * 119.99571 * 0.27696 * 6 5 4 24 24 C 1.37610 * 119.99593 * 359.42256 * 23 6 5 25 25 H 4.51945 * 14.06479 * 359.97438 * 4 2 1 26 26 H 1.07996 * 120.00258 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.99918 * 179.97438 * 5 4 3 28 28 H 0.96994 * 120.00569 * 359.97438 * 9 7 6 29 29 H 1.09004 * 109.48554 * 63.72503 * 12 10 9 30 30 H 1.09003 * 109.49510 * 303.68845 * 12 10 9 31 31 H 1.09002 * 109.62536 * 185.65224 * 13 12 10 32 32 H 1.09005 * 109.78018 * 65.18108 * 13 12 10 33 33 H 0.97000 * 119.99706 * 179.97438 * 16 15 14 34 34 H 1.09001 * 109.62687 * 68.11424 * 21 14 13 35 35 H 1.08992 * 109.62894 * 188.69109 * 21 14 13 36 36 H 1.08995 * 109.48261 * 296.28058 * 22 10 9 37 37 H 1.09002 * 109.47748 * 56.30452 * 22 10 9 38 38 H 1.07999 * 120.00687 * 179.72756 * 23 6 5 39 39 H 1.07997 * 120.00256 * 180.31532 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3040 0.9854 0.7036 5 6 4.6800 0.9866 0.7034 6 6 5.3793 0.0024 -0.0003 7 6 6.8561 0.0032 -0.0002 8 8 7.4636 0.8602 0.6116 9 7 7.5305 -0.9465 -0.6785 10 6 8.9955 -0.9454 -0.6789 11 1 9.3578 -0.6047 0.2910 12 6 9.5049 -2.3635 -0.9424 13 6 11.0343 -2.3801 -0.8512 14 6 11.5839 -1.3348 -1.7962 15 6 12.5630 -1.6551 -2.7128 16 7 13.0312 -2.8825 -2.7729 17 14 13.2242 -0.3454 -3.8692 18 1 14.3853 0.3317 -3.2379 19 1 13.6528 -0.9794 -5.1418 20 1 12.1602 0.6525 -4.1471 21 6 11.0365 0.0725 -1.7059 22 6 9.5030 -0.0011 -1.7700 23 6 4.6811 -0.9794 -0.7083 24 6 3.3050 -0.9840 -0.7028 25 1 -1.0500 -0.0005 -0.0010 26 1 2.7636 1.7458 1.2478 27 1 5.2195 1.7481 1.2469 28 1 7.0459 -1.6306 -1.1664 29 1 9.1966 -2.6813 -1.9385 30 1 9.0889 -3.0434 -0.1989 31 1 11.4074 -3.3639 -1.1363 32 1 11.3456 -2.1519 0.1682 33 1 13.7197 -3.1079 -3.4180 34 1 11.3451 0.5256 -0.7638 35 1 11.4109 0.6653 -2.5404 36 1 9.1948 -0.3747 -2.7464 37 1 9.0854 0.9935 -1.6129 38 1 5.2213 -1.7375 -1.2558 39 1 2.7653 -1.7457 -1.2458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188740197.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:19 Heat of formation + Delta-G solvation = 26.074525 kcal Electronic energy + Delta-G solvation = -20906.342212 eV Core-core repulsion = 17779.395936 eV Total energy + Delta-G solvation = -3126.946276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.22395 -38.64147 -36.69892 -34.16538 -33.73985 -31.83278 -31.16149 -30.45455 -29.64684 -27.28901 -24.58516 -22.87531 -22.13815 -21.50363 -20.33399 -19.58821 -19.23396 -17.75462 -16.14862 -16.08391 -15.76851 -14.99071 -14.82539 -14.67053 -14.41552 -13.88212 -13.64596 -13.38083 -13.12069 -12.74416 -12.41178 -12.32233 -12.11146 -11.69129 -11.61807 -11.37782 -11.01478 -10.83111 -10.78358 -10.73446 -10.18959 -10.02221 -9.74129 -9.53607 -9.30722 -9.02795 -8.90804 -8.78360 -8.49834 -8.31022 -6.11353 -4.02110 0.32851 1.10769 2.37781 2.39799 3.25279 3.27621 3.35848 3.37273 3.44397 3.84130 3.88112 4.38003 4.56996 4.63388 4.80755 5.04325 5.16069 5.23046 5.25106 5.58649 5.71204 5.73756 5.87436 6.02278 6.11541 6.14172 6.18258 6.44476 6.47393 6.55338 6.69400 6.74763 6.88123 6.94407 7.10517 7.15192 7.22513 7.43079 7.63709 7.69787 7.74283 7.89017 8.36980 8.47544 8.95036 9.53583 10.98087 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036345 B = 0.003148 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.218713 B = 8891.850532 C = 9026.042375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.150 4.150 3 C 0.024 3.976 4 C -0.104 4.104 5 C -0.061 4.061 6 C -0.116 4.116 7 C 0.549 3.451 8 O -0.538 6.538 9 N -0.717 5.717 10 C 0.153 3.847 11 H 0.080 0.920 12 C -0.114 4.114 13 C 0.012 3.988 14 C -0.488 4.488 15 C 0.076 3.924 16 N -0.891 5.891 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.264 1.264 21 C -0.019 4.019 22 C -0.113 4.113 23 C -0.086 4.086 24 C -0.102 4.102 25 H 0.225 0.775 26 H 0.132 0.868 27 H 0.142 0.858 28 H 0.393 0.607 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.007 0.993 33 H 0.264 0.736 34 H 0.020 0.980 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.037 0.963 38 H 0.134 0.866 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.208 3.039 3.475 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.150 4.150 3 C 0.023 3.977 4 C -0.122 4.122 5 C -0.080 4.080 6 C -0.119 4.119 7 C 0.335 3.665 8 O -0.416 6.416 9 N -0.366 5.366 10 C 0.051 3.949 11 H 0.098 0.902 12 C -0.153 4.153 13 C -0.025 4.025 14 C -0.507 4.507 15 C -0.127 4.127 16 N -0.529 5.529 17 Si 0.715 3.285 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.189 1.189 21 C -0.057 4.057 22 C -0.152 4.152 23 C -0.105 4.105 24 C -0.120 4.120 25 H 0.242 0.758 26 H 0.150 0.850 27 H 0.160 0.840 28 H 0.228 0.772 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.152 0.848 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.584 3.509 3.811 21.226 hybrid contribution -0.115 0.245 -1.007 1.043 sum -20.699 3.754 2.805 21.223 Atomic orbital electron populations 1.24914 0.95772 0.99175 0.99118 1.20049 0.92028 1.01447 1.01490 1.16157 0.86637 0.96281 0.98584 1.21171 0.93796 0.98146 0.99058 1.21230 0.93298 0.97198 0.96296 1.20302 0.93841 0.97418 1.00382 1.18199 0.86608 0.82076 0.79586 1.90773 1.69718 1.37235 1.43884 1.46384 1.09010 1.29904 1.51321 1.21117 0.75664 0.97858 1.00277 0.90207 1.21935 1.01064 0.92634 0.99620 1.19339 0.88466 0.99279 0.95459 1.20059 1.19750 0.93175 1.17696 1.24846 0.95780 0.95291 0.96764 1.69834 1.28575 1.18167 1.36288 0.86678 0.79319 0.82032 0.80451 1.20381 1.21685 1.18935 1.19872 0.91169 0.97182 0.97502 1.21965 0.99262 0.96595 0.97341 1.21288 0.94013 0.97618 0.97572 1.21114 0.93779 0.98129 0.99011 0.75830 0.84990 0.83982 0.77220 0.92676 0.94544 0.92059 0.97497 0.92602 0.96173 0.94585 0.93024 0.94469 0.84826 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 19.25 29.55 0.57 -0.71 16 2 C -0.15 -1.45 13.23 -38.84 -0.51 -1.97 16 3 C 0.02 0.25 5.73 -106.87 -0.61 -0.37 16 4 C -0.10 -1.06 9.73 -39.26 -0.38 -1.44 16 5 C -0.06 -0.73 9.57 -39.25 -0.38 -1.11 16 6 C -0.12 -1.51 5.88 -104.92 -0.62 -2.13 16 7 C 0.55 9.01 7.73 -12.40 -0.10 8.92 16 8 O -0.54 -10.80 15.99 5.31 0.08 -10.71 16 9 N -0.72 -11.35 5.02 -54.83 -0.28 -11.62 16 10 C 0.15 2.98 2.35 -67.97 -0.16 2.82 16 11 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 12 C -0.11 -2.29 5.40 -26.63 -0.14 -2.43 16 13 C 0.01 0.30 5.97 -27.49 -0.16 0.14 16 14 C -0.49 -12.71 5.50 -98.92 -0.54 -13.25 16 15 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 16 N -0.89 -25.28 12.73 55.43 0.71 -24.58 16 17 Si 0.89 21.02 27.52 -169.99 -4.68 16.34 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.26 -6.08 6.12 56.52 0.35 -5.74 16 21 C -0.02 -0.46 5.62 -27.26 -0.15 -0.61 16 22 C -0.11 -2.37 5.52 -26.41 -0.15 -2.52 16 23 C -0.09 -0.90 9.52 -39.25 -0.37 -1.27 16 24 C -0.10 -0.99 9.73 -39.26 -0.38 -1.37 16 25 H 0.22 0.76 7.80 -54.09 -0.42 0.34 16 26 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 27 H 0.14 1.69 7.64 -52.49 -0.40 1.29 16 28 H 0.39 5.01 6.61 -40.82 -0.27 4.74 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.04 0.85 4.60 -51.93 -0.24 0.61 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.13 1.12 6.38 -52.49 -0.34 0.79 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -30.89 328.76 -8.40 -39.29 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.00 Total: 1.67 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -4.19 Total: -15.35 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.43 Total: -36.20 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.68 Total: 16.34 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.89 -8.40 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188740197.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.367 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds