Wall clock time and date at job start Tue Mar 31 2020 05:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86805 * 119.99687 * 2 1 4 4 H 1.48499 * 109.46539 * 274.96909 * 3 2 1 5 5 H 1.48492 * 109.47448 * 34.97167 * 3 2 1 6 6 H 1.48501 * 109.46800 * 154.97395 * 3 2 1 7 7 C 1.39844 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00071 * 153.26897 * 7 2 1 9 9 C 1.41102 * 120.00107 * 333.28069 * 7 2 1 10 10 C 1.40905 * 120.15410 * 159.35253 * 9 7 2 11 11 C 1.36313 * 119.83427 * 180.02562 * 10 9 7 12 12 C 1.39602 * 120.16417 * 0.02562 * 11 10 9 13 13 N 1.38814 * 119.84725 * 180.02562 * 12 11 10 14 14 C 1.39586 * 120.00168 * 158.96844 * 13 12 11 15 15 C 1.38996 * 120.08066 * 328.02296 * 14 13 12 16 16 C 1.38068 * 119.91706 * 180.02562 * 15 14 13 17 17 C 1.38318 * 120.08076 * 359.97407 * 16 15 14 18 18 C 1.38282 * 120.16298 * 0.02714 * 17 16 15 19 19 C 1.50697 * 119.95992 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47427 * 89.99611 * 19 18 17 21 21 O 1.42903 * 109.47469 * 179.97438 * 20 19 18 22 22 C 1.38102 * 120.07747 * 359.71472 * 18 17 16 23 23 C 1.39607 * 120.30832 * 0.26518 * 12 11 10 24 24 C 1.36311 * 120.15595 * 359.45272 * 23 12 11 25 25 H 0.96997 * 119.99663 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.07820 * 359.97438 * 10 9 7 27 27 H 1.08010 * 119.91508 * 179.97438 * 11 10 9 28 28 H 0.97000 * 119.99445 * 338.70020 * 13 12 11 29 29 H 1.07995 * 120.04326 * 0.02562 * 15 14 13 30 30 H 1.07997 * 119.95424 * 179.97438 * 16 15 14 31 31 H 1.08001 * 119.91842 * 179.97438 * 17 16 15 32 32 H 1.09006 * 109.46986 * 209.99619 * 19 18 17 33 33 H 1.09003 * 109.47048 * 329.99296 * 19 18 17 34 34 H 1.08998 * 109.46730 * 299.99944 * 20 19 18 35 35 H 1.09002 * 109.46812 * 60.00099 * 20 19 18 36 36 H 0.96689 * 114.00182 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.04262 * 180.27486 * 22 18 17 38 38 H 1.08001 * 119.92133 * 179.70554 * 23 12 11 39 39 H 1.07999 * 120.07740 * 180.28635 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.3855 2.1070 -1.3949 5 1 1.4971 2.6201 0.8024 6 1 3.5893 1.4122 0.5923 7 6 2.0084 -1.2111 0.0005 8 1 3.0019 -1.2612 -0.4201 9 6 1.4160 -2.3676 0.5505 10 6 1.8862 -3.6450 0.1866 11 6 1.3087 -4.7580 0.7215 12 6 0.2536 -4.6344 1.6272 13 7 -0.3292 -5.7721 2.1683 14 6 -1.0504 -5.6873 3.3604 15 6 -0.6877 -4.7593 4.3295 16 6 -1.4030 -4.6787 5.5077 17 6 -2.4797 -5.5196 5.7240 18 6 -2.8434 -6.4441 4.7621 19 6 -4.0176 -7.3577 5.0023 20 6 -5.2945 -6.6947 4.4818 21 8 -6.4079 -7.5613 4.7090 22 6 -2.1358 -6.5268 3.5790 23 6 -0.2213 -3.3720 1.9876 24 6 0.3505 -2.2504 1.4650 25 1 -0.4849 0.8400 -0.0004 26 1 2.7015 -3.7421 -0.5149 27 1 1.6679 -5.7378 0.4431 28 1 -0.2386 -6.6253 1.7158 29 1 0.1526 -4.1021 4.1612 30 1 -1.1215 -3.9581 6.2612 31 1 -3.0372 -5.4546 6.6467 32 1 -3.8579 -8.3000 4.4782 33 1 -4.1168 -7.5485 6.0709 34 1 -5.4542 -5.7524 5.0059 35 1 -5.1952 -6.5039 3.4132 36 1 -7.2529 -7.2042 4.4035 37 1 -2.4231 -7.2461 2.8263 38 1 -1.0410 -3.2838 2.6853 39 1 -0.0150 -1.2744 1.7482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203115103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:50 Heat of formation + Delta-G solvation = -10.947597 kcal Electronic energy + Delta-G solvation = -20725.457387 eV Core-core repulsion = 17596.905711 eV Total energy + Delta-G solvation = -3128.551675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.62362 -37.90631 -36.96642 -35.22242 -33.33901 -32.55900 -30.07983 -29.68448 -28.37750 -27.81412 -24.74573 -23.39477 -22.30542 -21.19105 -20.83336 -19.76156 -17.64055 -17.40608 -16.62428 -16.24251 -15.67577 -15.42611 -15.13792 -14.37997 -14.20872 -13.99812 -13.69931 -13.11911 -12.87106 -12.82406 -12.48646 -12.08527 -11.99208 -11.90244 -11.57939 -11.34620 -11.27633 -11.12388 -10.94973 -10.82801 -10.63361 -10.10972 -9.94713 -9.81038 -9.46197 -9.02774 -8.49869 -7.99322 -7.62455 -6.92963 -6.51659 -4.21734 1.64592 1.74844 2.77007 2.98640 3.05116 3.08534 3.21605 3.89686 3.91946 4.11290 4.27253 4.55218 4.89260 5.05626 5.19778 5.23974 5.45106 5.45895 5.65067 5.65539 5.74563 5.85756 5.95146 6.11032 6.13121 6.21931 6.32008 6.71378 6.74070 6.83276 6.88436 6.92331 7.01554 7.17124 7.22330 7.42632 7.48365 7.52852 7.69946 7.98534 8.13418 8.32035 8.46571 8.58613 8.84647 8.95605 10.08682 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024313 B = 0.003380 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.375505 B = 8282.659319 C = 8652.259452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.081 3.919 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.096 3.904 10 C -0.208 4.208 11 C -0.120 4.120 12 C 0.027 3.973 13 N -0.676 5.676 14 C 0.210 3.790 15 C -0.167 4.167 16 C -0.085 4.085 17 C -0.171 4.171 18 C -0.055 4.055 19 C -0.075 4.075 20 C 0.080 3.920 21 O -0.579 6.579 22 C -0.183 4.183 23 C -0.127 4.127 24 C -0.150 4.150 25 H 0.282 0.718 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.395 0.605 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.379 0.621 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 -7.883 7.732 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.097 0.903 9 C 0.093 3.907 10 C -0.229 4.229 11 C -0.141 4.141 12 C -0.067 4.067 13 N -0.296 5.296 14 C 0.108 3.892 15 C -0.189 4.189 16 C -0.104 4.104 17 C -0.191 4.191 18 C -0.056 4.056 19 C -0.112 4.112 20 C 0.002 3.998 21 O -0.385 6.385 22 C -0.206 4.206 23 C -0.148 4.148 24 C -0.170 4.170 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.229 0.771 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.226 0.774 37 H 0.134 0.866 38 H 0.115 0.885 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.588 -7.964 7.935 13.030 hybrid contribution -0.060 0.898 -0.586 1.074 sum -6.648 -7.067 7.348 12.171 Atomic orbital electron populations 1.69923 1.07811 1.29509 1.33301 1.25910 0.94507 1.01418 0.92026 0.86437 0.81173 0.80897 0.79103 1.19574 1.19957 1.18283 1.19460 1.02139 0.92740 1.34760 0.90344 1.17568 0.91271 0.91872 0.90023 1.20476 1.04699 0.92250 1.05438 1.19930 0.96336 0.97279 1.00572 1.17176 0.99540 0.85568 1.04462 1.41631 1.56335 1.09374 1.22286 1.17748 0.90403 0.95043 0.86020 1.21149 1.02218 1.02505 0.93019 1.20889 0.95010 0.98011 0.96490 1.20719 1.00045 0.98664 0.99710 1.19281 0.95845 0.96473 0.94017 1.20405 0.90762 0.97826 1.02242 1.22187 0.85814 0.92300 0.99463 1.86432 1.18480 1.47618 1.85927 1.20615 0.96487 1.04795 0.98657 1.20345 1.00229 0.91627 1.02594 1.20834 1.00056 0.96854 0.99208 0.90766 0.88744 0.89309 0.77111 0.85200 0.86414 0.86919 0.90647 0.90565 0.93354 0.93305 0.77418 0.86637 0.88521 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.82 11.27 55.54 0.63 -19.19 16 2 C 0.08 1.99 4.95 -17.34 -0.09 1.90 16 3 Si 0.90 18.20 29.63 -169.99 -5.04 13.17 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -12.02 8.99 -37.90 -0.34 -12.36 16 8 H 0.08 1.97 7.97 -52.49 -0.42 1.55 16 9 C 0.10 2.49 5.60 -106.79 -0.60 1.89 16 10 C -0.21 -4.99 9.74 -39.27 -0.38 -5.37 16 11 C -0.12 -2.62 9.86 -39.77 -0.39 -3.01 16 12 C 0.03 0.57 6.19 -83.68 -0.52 0.05 16 13 N -0.68 -12.13 5.43 -8.31 -0.05 -12.18 16 14 C 0.21 3.58 5.95 -83.78 -0.50 3.08 16 15 C -0.17 -2.85 7.55 -39.36 -0.30 -3.15 16 16 C -0.09 -1.24 10.04 -39.61 -0.40 -1.64 16 17 C -0.17 -2.30 9.70 -39.54 -0.38 -2.68 16 18 C -0.06 -0.74 5.13 -104.66 -0.54 -1.28 16 19 C -0.07 -0.85 5.71 -27.88 -0.16 -1.01 16 20 C 0.08 0.85 7.03 37.16 0.26 1.11 16 21 O -0.58 -5.96 13.66 -35.23 -0.48 -6.44 16 22 C -0.18 -2.71 9.62 -39.37 -0.38 -3.09 16 23 C -0.13 -2.94 7.69 -39.76 -0.31 -3.25 16 24 C -0.15 -3.81 8.69 -39.27 -0.34 -4.15 16 25 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 26 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 27 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 28 H 0.39 6.13 8.86 -40.82 -0.36 5.77 16 29 H 0.13 2.43 6.40 -52.49 -0.34 2.09 16 30 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.38 2.16 9.12 45.56 0.42 2.58 16 37 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.10 2.13 5.95 -52.49 -0.31 1.82 16 39 H 0.11 3.01 6.21 -52.49 -0.33 2.69 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -28.29 329.28 -9.60 -37.90 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -4.27 Total: 14.73 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -5.35 Total: -32.95 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.58 Total: -31.37 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.48 Total: -6.44 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.04 Total: 13.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.29 -9.60 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203115103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.948 kcal (2) G-P(sol) polarization free energy of solvation -28.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds