Wall clock time and date at job start Tue Mar 31 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86796 * 120.00168 * 2 1 4 4 H 1.48502 * 109.46784 * 83.18021 * 3 2 1 5 5 H 1.48496 * 109.47474 * 203.17821 * 3 2 1 6 6 H 1.48504 * 109.47066 * 323.18007 * 3 2 1 7 7 C 1.39919 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99947 * 23.70520 * 7 2 1 9 9 C 1.41013 * 119.99785 * 203.69953 * 7 2 1 10 10 C 1.40739 * 120.30809 * 27.43189 * 9 7 2 11 11 C 1.36430 * 119.95216 * 179.97438 * 10 9 7 12 12 C 1.38923 * 120.60712 * 0.02562 * 11 10 9 13 13 C 1.38120 * 120.63542 * 359.97438 * 12 11 10 14 14 C 1.38818 * 120.01954 * 359.74136 * 13 12 11 15 15 N 1.38687 * 120.29801 * 180.25702 * 14 13 12 16 16 C 1.39585 * 119.99700 * 253.85912 * 15 14 13 17 17 C 1.38994 * 120.08474 * 13.69440 * 16 15 14 18 18 C 1.38060 * 119.92352 * 179.70111 * 17 16 15 19 19 C 1.38325 * 120.07513 * 0.56864 * 18 17 16 20 20 C 1.38284 * 120.16570 * 359.72841 * 19 18 17 21 21 C 1.50700 * 119.96415 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.46987 * 269.97641 * 21 20 19 23 23 O 1.42898 * 109.47208 * 179.97438 * 22 21 20 24 24 C 1.38106 * 120.07402 * 359.97438 * 20 19 18 25 25 H 0.96999 * 120.00207 * 175.04970 * 1 2 3 26 26 H 1.08003 * 120.02520 * 359.95093 * 10 9 7 27 27 H 1.08006 * 119.69763 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.68374 * 179.97438 * 12 11 10 29 29 H 1.07992 * 119.99525 * 180.02562 * 13 12 11 30 30 H 0.96995 * 119.99638 * 73.86588 * 15 14 13 31 31 H 1.08002 * 120.03748 * 359.97438 * 17 16 15 32 32 H 1.07996 * 119.96670 * 180.27821 * 18 17 16 33 33 H 1.08005 * 119.91729 * 179.74361 * 19 18 17 34 34 H 1.08996 * 109.46770 * 29.97741 * 21 20 19 35 35 H 1.08994 * 109.47247 * 149.97886 * 21 20 19 36 36 H 1.08997 * 109.47904 * 300.00306 * 22 21 20 37 37 H 1.09007 * 109.47148 * 59.99860 * 22 21 20 38 38 H 0.96699 * 114.00160 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.03740 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3464 2.1294 1.3902 5 1 3.6050 1.4029 -0.5510 6 1 1.5198 2.6068 -0.8391 7 6 2.0084 -1.2118 -0.0005 8 1 1.5367 -2.1074 -0.3769 9 6 3.3293 -1.2635 0.4903 10 6 3.7604 -0.3467 1.4672 11 6 5.0399 -0.4036 1.9374 12 6 5.9268 -1.3605 1.4603 13 6 5.5299 -2.2723 0.5017 14 6 4.2324 -2.2418 0.0093 15 7 3.8262 -3.1579 -0.9494 16 6 3.6510 -2.7514 -2.2732 17 6 4.1463 -1.5236 -2.6964 18 6 3.9765 -1.1275 -4.0080 19 6 3.3042 -1.9458 -4.8977 20 6 2.8047 -3.1654 -4.4789 21 6 2.0724 -4.0531 -5.4520 22 6 0.5794 -3.7205 -5.4216 23 8 -0.1149 -4.5618 -6.3447 24 6 2.9761 -3.5708 -3.1699 25 1 -0.4850 -0.8369 -0.0725 26 1 3.0790 0.4017 1.8441 27 1 5.3665 0.3023 2.6868 28 1 6.9364 -1.3918 1.8426 29 1 6.2278 -3.0120 0.1385 30 1 3.6637 -4.0811 -0.6999 31 1 4.6671 -0.8820 -2.0010 32 1 4.3650 -0.1756 -4.3386 33 1 3.1693 -1.6316 -5.9222 34 1 2.4610 -3.8887 -6.4570 35 1 2.2180 -5.0965 -5.1723 36 1 0.1908 -3.8848 -4.4166 37 1 0.4338 -2.6770 -5.7012 38 1 -1.0687 -4.4061 -6.3781 39 1 2.5861 -4.5236 -2.8435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203116866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:52 Heat of formation + Delta-G solvation = -32.356927 kcal Electronic energy + Delta-G solvation = -21672.378011 eV Core-core repulsion = 18542.897957 eV Total energy + Delta-G solvation = -3129.480054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81714 -39.52508 -37.89689 -36.20418 -35.65212 -33.63678 -32.07627 -31.49885 -29.37132 -28.80250 -26.48572 -24.44432 -23.28372 -23.22481 -22.41320 -20.90464 -20.06218 -18.56808 -18.15263 -17.62393 -16.91054 -16.47826 -16.24578 -16.19692 -15.75186 -15.21058 -15.15853 -14.72736 -14.49099 -14.41753 -13.93562 -13.86909 -13.63967 -13.12613 -12.81821 -12.77308 -12.43478 -12.39739 -12.19930 -12.07403 -11.82597 -11.77166 -11.35153 -11.10347 -10.93996 -10.72495 -9.66119 -9.59371 -9.46099 -9.24447 -8.16883 -6.48958 0.55736 0.65384 0.85987 0.92128 1.33778 1.53159 1.70889 2.14708 2.62645 2.78680 3.01663 3.39384 3.49307 3.97804 4.08680 4.19906 4.32313 4.33697 4.39537 4.42912 4.56392 4.63267 4.68252 4.73151 4.82442 4.90265 5.03236 5.05049 5.17326 5.21837 5.39258 5.48836 5.57960 5.68341 5.72560 5.81210 5.85178 6.01028 6.11198 6.16625 6.39874 6.57359 6.79637 6.81701 6.89802 7.18453 7.97493 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.005867 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.579567 B = 4771.162027 C = 5585.960529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.016 3.984 3 Si 1.094 2.906 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.046 0.954 9 C 0.075 3.925 10 C -0.250 4.250 11 C -0.080 4.080 12 C -0.228 4.228 13 C -0.084 4.084 14 C 0.015 3.985 15 N -0.675 5.675 16 C 0.224 3.776 17 C -0.194 4.194 18 C -0.084 4.084 19 C -0.182 4.182 20 C -0.046 4.046 21 C -0.069 4.069 22 C 0.084 3.916 23 O -0.588 6.588 24 C -0.206 4.206 25 H 0.277 0.723 26 H 0.097 0.903 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.117 0.883 30 H 0.397 0.603 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.398 0.602 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.019 -3.451 -7.482 9.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.199 4.199 3 Si 0.916 3.084 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.210 1.210 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.071 3.929 10 C -0.269 4.269 11 C -0.098 4.098 12 C -0.248 4.248 13 C -0.104 4.104 14 C -0.079 4.079 15 N -0.298 5.298 16 C 0.121 3.879 17 C -0.216 4.216 18 C -0.103 4.103 19 C -0.202 4.202 20 C -0.047 4.047 21 C -0.106 4.106 22 C 0.006 3.994 23 O -0.397 6.397 24 C -0.229 4.229 25 H 0.087 0.913 26 H 0.115 0.885 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.135 0.865 30 H 0.233 0.767 31 H 0.116 0.884 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.247 0.753 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.341 -1.966 -7.424 9.354 hybrid contribution -1.086 -1.941 0.572 2.297 sum 4.254 -3.907 -6.852 8.962 Atomic orbital electron populations 1.70626 1.08731 1.32531 1.34287 1.28116 0.95627 1.06602 0.89544 0.83323 0.75327 0.71071 0.78667 1.18576 1.18647 1.20960 1.20199 0.98682 0.96444 1.38987 0.93621 1.18145 0.92186 0.92345 0.90273 1.20871 0.98080 1.04745 1.03230 1.20785 0.92913 0.97728 0.98379 1.20715 1.00278 0.99989 1.03789 1.21192 0.93754 0.98414 0.97029 1.17499 0.92653 0.99768 0.97973 1.41147 1.74548 1.10239 1.03912 1.18009 0.92036 0.93502 0.84336 1.20724 1.06603 0.97331 0.96960 1.21107 0.97323 0.99555 0.92285 1.20960 1.03670 0.95013 1.00521 1.19506 0.96999 0.95099 0.93119 1.20372 0.92795 0.98783 0.98683 1.22050 0.92118 0.93474 0.91713 1.86368 1.26082 1.63267 1.63948 1.20587 1.06242 1.01944 0.94111 0.91271 0.88508 0.85460 0.85212 0.86464 0.76718 0.88400 0.84711 0.84311 0.89233 0.90435 0.94484 0.93084 0.75263 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.21 13.66 21.83 0.30 -45.91 16 2 C 0.02 0.85 5.33 85.24 0.45 1.30 16 3 Si 1.09 49.08 25.03 68.60 1.72 50.80 16 4 H -0.26 -10.81 6.71 99.48 0.67 -10.14 16 5 H -0.26 -11.63 7.03 99.48 0.70 -10.93 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.51 -27.68 8.50 23.36 0.20 -27.48 16 8 H 0.05 2.67 7.80 -2.91 -0.02 2.64 16 9 C 0.07 3.68 5.02 -21.17 -0.11 3.57 16 10 C -0.25 -11.45 7.31 22.46 0.16 -11.28 16 11 C -0.08 -3.11 9.96 22.01 0.22 -2.89 16 12 C -0.23 -8.33 10.03 22.41 0.22 -8.10 16 13 C -0.08 -3.26 9.96 22.38 0.22 -3.03 16 14 C 0.02 0.67 4.51 39.02 0.18 0.84 16 15 N -0.68 -27.25 4.74 -179.36 -0.85 -28.10 16 16 C 0.22 8.94 5.99 38.26 0.23 9.17 16 17 C -0.19 -7.88 9.25 22.41 0.21 -7.67 16 18 C -0.08 -2.89 10.04 22.25 0.22 -2.66 16 19 C -0.18 -5.57 9.70 22.30 0.22 -5.35 16 20 C -0.05 -1.44 5.13 -19.88 -0.10 -1.54 16 21 C -0.07 -1.76 5.71 29.85 0.17 -1.59 16 22 C 0.08 2.10 7.03 71.98 0.51 2.61 16 23 O -0.59 -13.33 13.66 -148.98 -2.03 -15.36 16 24 C -0.21 -7.25 9.57 22.41 0.21 -7.03 16 25 H 0.28 15.21 8.73 -92.71 -0.81 14.40 16 26 H 0.10 4.48 4.85 -2.91 -0.01 4.47 16 27 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 28 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 29 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 30 H 0.40 14.30 8.86 -92.71 -0.82 13.48 16 31 H 0.10 4.36 7.06 -2.91 -0.02 4.34 16 32 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.09 2.03 8.08 -2.39 -0.02 2.01 16 35 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 36 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.40 5.43 9.12 -74.06 -0.68 4.75 16 39 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -61.00 328.17 1.84 -59.16 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -0.51 Total: 40.56 kcal Atomic # 6 Polarization: -64.37 SS G_CDS: 3.22 Total: -61.15 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -0.55 Total: -74.01 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -2.03 Total: -15.36 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.72 Total: 50.80 kcal Total: -61.00 1.84 -59.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203116866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.799 kcal (2) G-P(sol) polarization free energy of solvation -60.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds