Wall clock time and date at job start Tue Mar 31 2020 05:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00309 * 2 1 4 4 H 1.48505 * 109.47250 * 270.00522 * 3 2 1 5 5 H 1.48506 * 109.47148 * 30.00100 * 3 2 1 6 6 H 1.48504 * 109.47557 * 150.00225 * 3 2 1 7 7 C 1.39929 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00506 * 192.18507 * 7 2 1 9 9 C 1.41414 * 119.99709 * 12.17829 * 7 2 1 10 10 C 1.40787 * 120.20568 * 27.53038 * 9 7 2 11 11 C 1.37652 * 119.89367 * 179.97438 * 10 9 7 12 12 C 1.38510 * 120.32984 * 359.72465 * 11 10 9 13 13 C 1.39312 * 120.42118 * 0.55264 * 12 11 10 14 14 N 1.39720 * 119.95465 * 179.71890 * 13 12 11 15 15 C 1.39717 * 120.00184 * 328.12759 * 14 13 12 16 16 C 1.38951 * 120.07351 * 334.55697 * 15 14 13 17 17 C 1.38069 * 119.92396 * 180.25247 * 16 15 14 18 18 C 1.38320 * 120.07729 * 0.04335 * 17 16 15 19 19 C 1.38273 * 120.14846 * 359.95654 * 18 17 16 20 20 C 1.50697 * 119.96014 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47084 * 269.97704 * 20 19 18 22 22 O 1.42898 * 109.47422 * 180.02562 * 21 20 19 23 23 C 1.38118 * 120.07671 * 0.02562 * 19 18 17 24 24 C 1.38333 * 120.09212 * 359.44726 * 13 12 11 25 25 H 0.96994 * 120.00034 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.05572 * 359.95691 * 10 9 7 27 27 H 1.08001 * 119.83333 * 180.02562 * 11 10 9 28 28 H 1.08007 * 119.79315 * 180.27172 * 12 11 10 29 29 H 0.97001 * 119.99831 * 148.11877 * 14 13 12 30 30 H 1.08001 * 120.03450 * 0.25426 * 16 15 14 31 31 H 1.07999 * 119.96560 * 180.02562 * 17 16 15 32 32 H 1.07998 * 119.92663 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.47414 * 29.97458 * 20 19 18 34 34 H 1.09002 * 109.47501 * 149.97888 * 20 19 18 35 35 H 1.09004 * 109.46794 * 300.00134 * 21 20 19 36 36 H 1.09000 * 109.47231 * 60.00068 * 21 20 19 37 37 H 0.96697 * 114.00105 * 180.02562 * 22 21 20 38 38 H 1.08007 * 120.03597 * 180.02562 * 23 19 18 39 39 H 1.08003 * 120.16194 * 180.24960 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0697 -1.2225 0.1969 9 6 1.3247 -2.4226 -0.2594 10 6 0.1614 -2.4238 -1.0524 11 6 -0.4983 -3.6062 -1.3007 12 6 -0.0202 -4.7969 -0.7790 13 6 1.1265 -4.8104 0.0121 14 7 1.5968 -6.0162 0.5383 15 6 0.6966 -7.0311 0.8723 16 6 -0.6183 -6.7174 1.1941 17 6 -1.5040 -7.7223 1.5289 18 6 -1.0835 -9.0400 1.5450 19 6 0.2242 -9.3556 1.2253 20 6 0.6776 -10.7927 1.2436 21 6 1.2033 -11.1438 2.6369 22 8 1.6337 -12.5063 2.6542 23 6 1.1154 -8.3554 0.8892 24 6 1.8032 -3.6324 0.2728 25 1 -0.4850 0.8400 0.0004 26 1 -0.2130 -1.4987 -1.4649 27 1 -1.3904 -3.6061 -1.9095 28 1 -0.5422 -5.7201 -0.9830 29 1 2.5485 -6.1488 0.6715 30 1 -0.9470 -5.6887 1.1824 31 1 -2.5262 -7.4793 1.7787 32 1 -1.7782 -9.8241 1.8075 33 1 -0.1628 -11.4420 0.9981 34 1 1.4714 -10.9327 0.5099 35 1 2.0436 -10.4945 2.8824 36 1 0.4095 -11.0039 3.3707 37 1 1.9797 -12.7987 3.5085 38 1 2.1366 -8.6027 0.6392 39 1 2.6945 -3.6421 0.8826 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203120839.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:52 Heat of formation + Delta-G solvation = -14.529966 kcal Electronic energy + Delta-G solvation = -20600.700669 eV Core-core repulsion = 17471.993650 eV Total energy + Delta-G solvation = -3128.707019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.63469 -37.87266 -37.00073 -35.18884 -33.30692 -32.62551 -30.06177 -29.87810 -28.21692 -27.10278 -25.31367 -23.47290 -22.26385 -21.31906 -20.70401 -19.85335 -17.78530 -17.36337 -16.60408 -15.97434 -15.63973 -15.35840 -14.96176 -14.56477 -14.39158 -14.12354 -13.69148 -13.29056 -12.90669 -12.86572 -12.50080 -12.27379 -11.97085 -11.68122 -11.57313 -11.30863 -11.19692 -11.14801 -10.95259 -10.78401 -10.48244 -10.16823 -10.03977 -9.77370 -9.43736 -9.21997 -8.55526 -7.95776 -7.50484 -6.77735 -6.43872 -4.42867 1.60720 1.72206 2.75616 3.01139 3.05733 3.08784 3.19600 3.87441 3.91861 3.98923 4.22299 4.63115 4.84246 5.02333 5.12504 5.18901 5.38501 5.42193 5.60387 5.63798 5.70530 5.81892 5.91510 6.05680 6.22089 6.27057 6.41819 6.67368 6.71074 6.85688 6.88249 6.95031 7.00331 7.17198 7.22966 7.30178 7.37249 7.67039 7.76856 7.99903 8.08676 8.33065 8.34830 8.62569 8.86521 8.93374 10.18975 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036879 B = 0.003033 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.064087 B = 9228.598276 C = 9623.998393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.129 3.871 10 C -0.175 4.175 11 C -0.087 4.087 12 C -0.265 4.265 13 C 0.179 3.821 14 N -0.687 5.687 15 C 0.212 3.788 16 C -0.165 4.165 17 C -0.084 4.084 18 C -0.170 4.170 19 C -0.055 4.055 20 C -0.076 4.076 21 C 0.081 3.919 22 O -0.578 6.578 23 C -0.184 4.184 24 C -0.254 4.254 25 H 0.280 0.720 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.399 0.601 30 H 0.134 0.866 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.379 0.621 38 H 0.117 0.883 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 -14.080 4.143 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.126 3.874 10 C -0.195 4.195 11 C -0.106 4.106 12 C -0.286 4.286 13 C 0.085 3.915 14 N -0.308 5.308 15 C 0.111 3.889 16 C -0.187 4.187 17 C -0.103 4.103 18 C -0.190 4.190 19 C -0.055 4.055 20 C -0.113 4.113 21 C 0.003 3.997 22 O -0.384 6.384 23 C -0.207 4.207 24 C -0.276 4.276 25 H 0.091 0.909 26 H 0.138 0.862 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.234 0.766 30 H 0.151 0.849 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.226 0.774 38 H 0.135 0.865 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.317 -13.776 3.488 14.214 hybrid contribution 0.859 0.821 0.704 1.381 sum 0.542 -12.956 4.192 13.628 Atomic orbital electron populations 1.69804 1.07442 1.29070 1.36025 1.25890 0.94820 1.01241 0.92324 0.86271 0.80348 0.80559 0.79265 1.19308 1.20298 1.18704 1.19558 0.96241 0.90555 1.42910 0.90538 1.17405 0.91077 0.91374 0.87540 1.21373 0.98980 0.96755 1.02350 1.20534 0.98187 0.92875 0.99011 1.20205 1.01946 0.97278 1.09214 1.17423 0.95772 0.83760 0.94545 1.42224 1.07359 1.13212 1.67972 1.17800 0.90589 0.87634 0.92895 1.21165 0.93185 1.00653 1.03690 1.20903 0.98986 0.92406 0.97988 1.20742 0.95453 0.96349 1.06463 1.19272 0.93652 0.93618 0.99007 1.20411 1.01662 0.92782 0.96476 1.22176 0.97990 0.82137 0.97362 1.86449 1.85123 1.28363 1.38440 1.20549 1.00142 0.90776 1.09189 1.20727 1.05325 0.91663 1.09917 0.90921 0.86163 0.89127 0.88890 0.76576 0.84863 0.86312 0.86839 0.90477 0.90554 0.93423 0.93395 0.77449 0.86531 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.41 10.83 55.55 0.60 -19.80 16 2 C 0.07 1.84 5.23 -17.35 -0.09 1.75 16 3 Si 0.91 18.50 29.58 -169.99 -5.03 13.48 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -12.09 9.06 -37.74 -0.34 -12.43 16 8 H 0.08 1.92 7.88 -52.48 -0.41 1.51 16 9 C 0.13 3.38 5.56 -106.85 -0.59 2.79 16 10 C -0.17 -4.47 8.67 -38.83 -0.34 -4.81 16 11 C -0.09 -2.02 10.01 -39.70 -0.40 -2.41 16 12 C -0.26 -5.86 7.75 -39.08 -0.30 -6.17 16 13 C 0.18 3.91 5.90 -83.83 -0.49 3.41 16 14 N -0.69 -12.47 5.46 -8.45 -0.05 -12.51 16 15 C 0.21 3.59 6.05 -83.75 -0.51 3.08 16 16 C -0.17 -2.82 7.87 -39.38 -0.31 -3.13 16 17 C -0.08 -1.21 10.04 -39.61 -0.40 -1.60 16 18 C -0.17 -2.22 9.70 -39.54 -0.38 -2.60 16 19 C -0.05 -0.71 5.13 -104.65 -0.54 -1.25 16 20 C -0.08 -0.83 5.71 -27.88 -0.16 -0.99 16 21 C 0.08 0.79 7.03 37.16 0.26 1.05 16 22 O -0.58 -5.55 13.66 -35.23 -0.48 -6.03 16 23 C -0.18 -2.66 9.59 -39.38 -0.38 -3.04 16 24 C -0.25 -6.08 9.70 -38.67 -0.37 -6.45 16 25 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 26 H 0.12 3.18 6.17 -52.49 -0.32 2.86 16 27 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.09 1.96 6.56 -52.48 -0.34 1.61 16 29 H 0.40 6.34 8.89 -40.82 -0.36 5.97 16 30 H 0.13 2.55 6.31 -52.49 -0.33 2.22 16 31 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.38 1.86 9.12 45.56 0.42 2.27 16 38 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 329.82 15.07 4.97 4.97 Total: -1.00 -28.52 329.82 -9.62 -38.14 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -4.29 Total: 14.57 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -5.34 Total: -32.81 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.56 Total: -32.32 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.48 Total: -6.03 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.52 -9.62 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203120839.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.614 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds