Wall clock time and date at job start Tue Mar 31 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00322 * 2 1 4 4 H 1.48490 * 109.47318 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46912 * 299.99978 * 3 2 1 6 6 H 1.48499 * 109.47093 * 59.99802 * 3 2 1 7 7 C 1.38810 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99895 * 175.02158 * 7 2 1 9 9 N 1.36934 * 120.00518 * 355.02431 * 7 2 1 10 10 C 1.46498 * 120.00015 * 185.77138 * 9 7 2 11 11 C 1.50702 * 109.47257 * 269.99816 * 10 9 7 12 12 C 1.38236 * 119.99709 * 90.00219 * 11 10 9 13 13 C 1.38237 * 119.99666 * 179.97438 * 12 11 10 14 14 C 1.38237 * 120.00283 * 0.08714 * 13 12 11 15 15 C 1.38238 * 119.99724 * 359.86969 * 14 13 12 16 16 C 1.38233 * 119.99979 * 269.97696 * 11 10 9 17 17 C 1.46496 * 120.00047 * 5.76903 * 9 7 2 18 18 C 1.50697 * 109.47311 * 265.45247 * 17 9 7 19 19 C 1.38296 * 119.96727 * 274.99901 * 18 17 9 20 20 C 1.38244 * 120.10553 * 179.72724 * 19 18 17 21 21 C 1.38163 * 120.06149 * 0.54712 * 20 19 18 22 22 C 1.38715 * 119.93880 * 359.72588 * 21 20 19 23 23 O 1.35905 * 120.05463 * 179.97438 * 22 21 20 24 24 C 1.38118 * 119.97713 * 95.27421 * 18 17 9 25 25 H 0.97000 * 120.00114 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47243 * 149.99675 * 10 9 7 27 27 H 1.08995 * 109.47456 * 30.00152 * 10 9 7 28 28 H 1.07990 * 120.00008 * 359.70366 * 12 11 10 29 29 H 1.08002 * 120.00229 * 179.97438 * 13 12 11 30 30 H 1.07999 * 120.00165 * 179.97438 * 14 13 12 31 31 H 1.08002 * 119.99948 * 180.02562 * 15 14 13 32 32 H 1.08001 * 120.00235 * 0.02562 * 16 11 10 33 33 H 1.09003 * 109.46932 * 25.44806 * 17 9 7 34 34 H 1.08996 * 109.47146 * 145.44919 * 17 9 7 35 35 H 1.07996 * 119.94648 * 359.97438 * 19 18 17 36 36 H 1.08007 * 119.96784 * 180.25567 * 20 19 18 37 37 H 1.08002 * 120.03234 * 179.75203 * 21 20 19 38 38 H 0.96695 * 113.99962 * 270.02796 * 23 22 21 39 39 H 1.07998 * 120.02564 * 359.97336 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0871 -1.2041 -0.0806 9 7 1.3293 -2.3858 0.1039 10 6 2.0658 -3.6457 0.2318 11 6 2.3356 -4.2113 -1.1387 12 6 3.4942 -3.8702 -1.8113 13 6 3.7420 -4.3895 -3.0682 14 6 2.8304 -5.2482 -3.6534 15 6 1.6722 -5.5899 -2.9804 16 6 1.4249 -5.0715 -1.7230 17 6 -0.1356 -2.3922 0.0866 18 6 -0.6547 -2.3735 1.5012 19 6 -0.7897 -3.5573 2.2032 20 6 -1.2604 -3.5429 3.5030 21 6 -1.6078 -2.3464 4.1001 22 6 -1.4787 -1.1582 3.3961 23 8 -1.8202 0.0201 3.9809 24 6 -1.0007 -1.1747 2.0936 25 1 -0.4850 0.8400 -0.0004 26 1 1.4730 -4.3563 0.8079 27 1 3.0114 -3.4636 0.7424 28 1 4.2036 -3.1948 -1.3566 29 1 4.6469 -4.1227 -3.5940 30 1 3.0238 -5.6535 -4.6356 31 1 0.9602 -6.2612 -3.4373 32 1 0.5197 -5.3379 -1.1976 33 1 -0.4965 -1.5114 -0.4445 34 1 -0.4891 -3.2911 -0.4183 35 1 -0.5233 -4.4941 1.7367 36 1 -1.3610 -4.4684 4.0506 37 1 -1.9793 -2.3361 5.1142 38 1 -2.7444 0.2716 3.8484 39 1 -0.8989 -0.2509 1.5435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203862802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:28 Heat of formation + Delta-G solvation = 48.780433 kcal Electronic energy + Delta-G solvation = -21900.515011 eV Core-core repulsion = 18774.553338 eV Total energy + Delta-G solvation = -3125.961674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.98062 -38.62139 -36.49441 -35.21936 -32.35336 -30.76699 -30.38771 -29.80200 -28.72355 -25.71007 -25.59781 -22.34607 -22.06106 -21.58914 -20.69996 -19.81153 -17.55179 -16.83068 -16.21004 -15.53885 -15.21726 -14.69199 -14.59775 -14.49553 -14.30796 -13.62548 -13.31427 -13.11654 -12.94687 -12.72253 -12.16964 -12.06581 -11.55736 -11.41846 -11.18912 -11.00114 -10.92345 -10.75169 -10.61229 -10.43717 -10.17825 -10.09461 -9.67224 -9.48619 -8.78741 -8.43483 -8.24458 -7.77532 -7.72685 -6.93349 -5.57335 -3.30310 1.87178 1.89056 2.13784 2.35171 3.34833 3.41272 3.43193 4.23647 4.44779 4.57267 4.98252 5.21711 5.32227 5.35297 5.48099 5.63695 5.64842 5.72422 5.82326 5.92795 6.00881 6.05585 6.19350 6.38209 6.50380 6.53537 6.55935 6.60282 6.69628 6.90340 6.93462 6.99971 7.07271 7.24964 7.27097 7.47681 7.51561 7.62507 7.73361 7.84496 8.05163 8.43372 8.55629 9.22486 9.75624 10.10973 11.12481 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.006413 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.357162 B = 4364.828955 C = 5869.885631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.023 4.023 3 Si 0.920 3.080 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.204 4.204 8 H 0.078 0.922 9 N -0.580 5.580 10 C 0.176 3.824 11 C -0.078 4.078 12 C -0.104 4.104 13 C -0.126 4.126 14 C -0.138 4.138 15 C -0.126 4.126 16 C -0.113 4.113 17 C 0.140 3.860 18 C -0.043 4.043 19 C -0.142 4.142 20 C -0.129 4.129 21 C -0.170 4.170 22 C 0.069 3.931 23 O -0.505 6.505 24 C -0.115 4.115 25 H 0.252 0.748 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.177 0.823 34 H 0.007 0.993 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.376 0.624 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -7.349 -0.805 7.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.751 3.249 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.333 4.333 8 H 0.095 0.905 9 N -0.298 5.298 10 C 0.049 3.951 11 C -0.081 4.081 12 C -0.123 4.123 13 C -0.144 4.144 14 C -0.157 4.157 15 C -0.144 4.144 16 C -0.132 4.132 17 C 0.016 3.984 18 C -0.045 4.045 19 C -0.161 4.161 20 C -0.147 4.147 21 C -0.189 4.189 22 C 0.025 3.975 23 O -0.313 6.313 24 C -0.134 4.134 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.192 0.808 34 H 0.025 0.975 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.229 0.771 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.353 -7.162 -0.627 7.198 hybrid contribution -0.044 0.581 0.130 0.597 sum -0.397 -6.581 -0.497 6.612 Atomic orbital electron populations 1.68983 1.04808 1.23479 1.58878 1.24676 0.95707 0.98014 1.02975 0.85885 0.78575 0.83112 0.77357 1.20675 1.21752 1.21482 1.19614 0.91441 0.83682 1.38515 0.90455 1.44171 1.01551 1.00799 1.83250 1.19880 0.96590 0.88625 0.90037 1.21072 0.93129 0.94008 0.99864 1.21021 0.97539 0.98940 0.94802 1.21058 0.99254 0.98263 0.95789 1.20948 0.95285 0.99900 0.99555 1.21027 0.97331 1.00658 0.95415 1.21003 0.98852 0.97877 0.95458 1.21619 0.81824 1.04046 0.90933 1.20868 0.93038 0.91008 0.99628 1.21169 1.01978 0.98255 0.94652 1.20729 1.01881 0.96527 0.95608 1.21148 1.05375 0.92644 0.99749 1.18880 1.01744 0.84107 0.92793 1.84827 1.31996 1.37832 1.76652 1.23193 0.94380 1.03441 0.92361 0.93460 0.93110 0.92759 0.86569 0.86980 0.87122 0.87012 0.86848 0.80784 0.97466 0.87757 0.87540 0.87522 0.77094 0.80078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.03 5.73 55.49 0.32 -22.71 16 2 C -0.02 -0.59 5.45 -17.43 -0.09 -0.68 16 3 Si 0.92 21.11 29.56 -169.99 -5.02 16.09 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.20 -5.15 9.82 -15.06 -0.15 -5.30 16 8 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.58 -13.47 2.50 -175.99 -0.44 -13.91 16 10 C 0.18 3.49 5.81 -5.19 -0.03 3.46 16 11 C -0.08 -1.43 5.46 -104.62 -0.57 -2.00 16 12 C -0.10 -1.82 9.70 -39.58 -0.38 -2.21 16 13 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 14 C -0.14 -2.03 10.05 -39.58 -0.40 -2.42 16 15 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 16 C -0.11 -1.91 9.70 -39.58 -0.38 -2.30 16 17 C 0.14 3.22 5.29 -5.20 -0.03 3.20 16 18 C -0.04 -0.94 5.46 -104.65 -0.57 -1.51 16 19 C -0.14 -2.77 9.35 -39.56 -0.37 -3.14 16 20 C -0.13 -2.34 10.04 -39.61 -0.40 -2.73 16 21 C -0.17 -3.18 9.99 -39.43 -0.39 -3.58 16 22 C 0.07 1.41 6.71 -39.22 -0.26 1.15 16 23 O -0.50 -9.46 13.50 -19.44 -0.26 -9.72 16 24 C -0.12 -2.62 9.15 -39.44 -0.36 -2.99 16 25 H 0.25 6.25 8.08 -40.82 -0.33 5.92 16 26 H 0.05 0.96 6.99 -51.93 -0.36 0.59 16 27 H 0.05 1.07 7.98 -51.93 -0.41 0.65 16 28 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.18 4.48 4.56 -82.07 -0.37 4.11 16 34 H 0.01 0.16 8.08 -51.93 -0.42 -0.26 16 35 H 0.10 1.86 7.43 -52.49 -0.39 1.47 16 36 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 38 H 0.38 4.99 9.06 45.56 0.41 5.40 16 39 H 0.18 4.47 4.54 -52.70 -0.24 4.23 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -27.79 325.63 -9.97 -37.77 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -4.28 Total: 13.29 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -5.19 Total: -25.71 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.12 Total: -36.62 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.26 Total: -9.72 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.79 -9.97 -37.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203862802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.547 kcal (2) G-P(sol) polarization free energy of solvation -27.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds