Wall clock time and date at job start Tue Mar 31 2020 05:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99821 * 2 1 4 4 H 1.48504 * 109.47138 * 273.81109 * 3 2 1 5 5 H 1.48504 * 109.47433 * 33.80884 * 3 2 1 6 6 H 1.48500 * 109.47290 * 153.80951 * 3 2 1 7 7 C 1.38806 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99840 * 31.88603 * 7 2 1 9 9 N 1.36936 * 120.00195 * 211.89000 * 7 2 1 10 10 C 1.46501 * 120.00020 * 219.79101 * 9 7 2 11 11 C 1.50701 * 109.47226 * 84.03274 * 10 9 7 12 12 C 1.38235 * 120.00103 * 267.63975 * 11 10 9 13 13 C 1.38234 * 119.99656 * 179.76543 * 12 11 10 14 14 C 1.38236 * 120.00446 * 0.50381 * 13 12 11 15 15 C 1.38241 * 119.99633 * 359.74659 * 14 13 12 16 16 C 1.38234 * 119.99839 * 359.97438 * 15 14 13 17 17 C 1.46504 * 120.00067 * 40.06446 * 9 7 2 18 18 C 1.50701 * 109.46800 * 95.45699 * 17 9 7 19 19 C 1.38266 * 119.94083 * 274.64217 * 18 17 9 20 20 C 1.38142 * 120.05056 * 179.73279 * 19 18 17 21 21 C 1.38731 * 119.94771 * 0.56292 * 20 19 18 22 22 O 1.35906 * 120.05688 * 179.68459 * 21 20 19 23 23 C 1.38732 * 119.88451 * 359.70927 * 21 20 19 24 24 C 1.38138 * 119.94727 * 359.97438 * 23 21 20 25 25 H 0.97000 * 120.00025 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 204.02895 * 10 9 7 27 27 H 1.08996 * 109.47339 * 324.03072 * 10 9 7 28 28 H 1.07992 * 119.99748 * 359.97438 * 12 11 10 29 29 H 1.08007 * 119.99792 * 180.22763 * 13 12 11 30 30 H 1.07997 * 119.99987 * 179.73116 * 14 13 12 31 31 H 1.07997 * 119.99766 * 179.97438 * 15 14 13 32 32 H 1.08002 * 119.99630 * 179.97438 * 16 15 14 33 33 H 1.08996 * 109.46914 * 215.45490 * 17 9 7 34 34 H 1.09002 * 109.46900 * 335.45600 * 17 9 7 35 35 H 1.08000 * 119.97460 * 359.97393 * 19 18 17 36 36 H 1.08006 * 120.02796 * 180.24781 * 20 19 18 37 37 H 0.96695 * 113.99738 * 270.02501 * 22 21 20 38 38 H 1.08004 * 120.02435 * 179.97438 * 23 21 20 39 39 H 1.07998 * 119.97233 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4171 2.0930 -1.3970 5 1 1.4902 2.6282 0.7790 6 1 3.5857 1.4184 0.6179 7 6 2.0103 -1.2021 0.0005 8 1 1.5926 -2.0670 -0.4931 9 7 3.2247 -1.2913 0.6271 10 6 4.3095 -2.0630 0.0156 11 6 5.0310 -1.2046 -0.9913 12 6 4.6442 -1.2226 -2.3183 13 6 5.3029 -0.4315 -3.2409 14 6 6.3552 0.3695 -2.8385 15 6 6.7453 0.3835 -1.5123 16 6 6.0829 -0.4031 -0.5887 17 6 3.4372 -0.6199 1.9118 18 6 3.2014 -1.5974 3.0343 19 6 1.9204 -1.8037 3.5120 20 6 1.7009 -2.7032 4.5372 21 6 2.7685 -3.3912 5.0954 22 8 2.5559 -4.2719 6.1084 23 6 4.0536 -3.1781 4.6180 24 6 4.2670 -2.2824 3.5882 25 1 -0.4850 0.8400 -0.0004 26 1 5.0088 -2.3821 0.7884 27 1 3.8955 -2.9389 -0.4839 28 1 3.8252 -1.8520 -2.6335 29 1 4.9983 -0.4428 -4.2770 30 1 6.8726 0.9842 -3.5601 31 1 7.5677 1.0090 -1.1980 32 1 6.3880 -0.3925 0.4473 33 1 4.4606 -0.2483 1.9626 34 1 2.7424 0.2148 2.0048 35 1 1.0902 -1.2640 3.0808 36 1 0.6996 -2.8670 4.9074 37 1 2.6052 -3.8770 6.9896 38 1 4.8864 -3.7122 5.0511 39 1 5.2673 -2.1160 3.2166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204098314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:30 Heat of formation + Delta-G solvation = 30.229777 kcal Electronic energy + Delta-G solvation = -21733.822500 eV Core-core repulsion = 18607.056410 eV Total energy + Delta-G solvation = -3126.766090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.35447 -38.69936 -36.90102 -35.30524 -32.10864 -31.21573 -30.51221 -30.36640 -29.38917 -25.97662 -25.32912 -22.31170 -22.17240 -22.00711 -21.03735 -20.02830 -18.07468 -17.00609 -16.33212 -15.52564 -15.28880 -15.04665 -14.71707 -14.65035 -14.32573 -14.20929 -13.42661 -13.06967 -12.92083 -12.89964 -12.73168 -12.26306 -12.09642 -11.74930 -11.62901 -11.53733 -11.00153 -10.74296 -10.68630 -10.53570 -10.32454 -10.19956 -10.01219 -9.64622 -8.57793 -8.50821 -8.39938 -8.20972 -7.97818 -6.91185 -6.16749 -3.48228 1.66647 1.83528 1.91378 1.93965 3.33011 3.45660 3.53647 4.05286 4.31712 4.48490 4.52759 5.06289 5.27646 5.34117 5.36322 5.37393 5.39842 5.50000 5.60491 5.70207 5.85738 5.94311 5.96741 6.05124 6.17841 6.21346 6.27830 6.46052 6.51939 6.57319 6.61349 6.67741 6.80723 6.87747 6.95699 7.01147 7.26078 7.28790 7.32206 7.55304 7.90980 7.93533 8.31253 8.88457 9.60276 10.03462 10.97765 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016923 B = 0.005896 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.141811 B = 4748.109307 C = 5756.364408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.053 3.947 3 Si 0.846 3.154 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.258 1.258 7 C -0.273 4.273 8 H 0.076 0.924 9 N -0.582 5.582 10 C 0.178 3.822 11 C -0.079 4.079 12 C -0.098 4.098 13 C -0.126 4.126 14 C -0.140 4.140 15 C -0.129 4.129 16 C -0.118 4.118 17 C 0.183 3.817 18 C -0.087 4.087 19 C -0.075 4.075 20 C -0.146 4.146 21 C 0.080 3.920 22 O -0.504 6.504 23 C -0.152 4.152 24 C -0.106 4.106 25 H 0.264 0.736 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.380 0.620 38 H 0.117 0.883 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.179 -1.850 4.977 11.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.150 4.150 3 Si 0.673 3.327 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.183 1.183 7 C -0.401 4.401 8 H 0.094 0.906 9 N -0.301 5.301 10 C 0.053 3.947 11 C -0.082 4.082 12 C -0.117 4.117 13 C -0.144 4.144 14 C -0.158 4.158 15 C -0.147 4.147 16 C -0.137 4.137 17 C 0.057 3.943 18 C -0.090 4.090 19 C -0.093 4.093 20 C -0.165 4.165 21 C 0.036 3.964 22 O -0.313 6.313 23 C -0.170 4.170 24 C -0.125 4.125 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.151 0.849 36 H 0.138 0.862 37 H 0.235 0.765 38 H 0.135 0.865 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.905 -2.176 4.502 11.095 hybrid contribution 0.354 1.481 0.200 1.536 sum 10.258 -0.695 4.702 11.306 Atomic orbital electron populations 1.70026 1.06323 1.27082 1.48011 1.25499 0.94735 0.97607 0.97164 0.87343 0.81833 0.85333 0.78185 1.21529 1.22265 1.18264 1.18617 0.92505 0.95249 1.33688 0.90635 1.44092 1.09654 1.60548 1.15783 1.20041 0.89404 0.92832 0.92452 1.20967 0.93775 0.98252 0.95232 1.21072 0.98632 0.99094 0.92923 1.21096 0.96559 0.97409 0.99301 1.20948 0.98526 1.00401 0.95954 1.20995 1.00292 0.99761 0.93690 1.20962 0.96593 0.97391 0.98739 1.20231 0.98847 0.92236 0.82960 1.21041 0.92927 0.99230 0.95838 1.21110 0.97485 0.96637 0.94117 1.21396 0.98511 0.97325 0.99261 1.18408 0.92463 0.92960 0.92596 1.84837 1.94017 1.35921 1.16485 1.21228 0.95946 0.99972 0.99868 1.20887 0.98717 0.96652 0.96260 0.92580 0.92996 0.92430 0.86085 0.86902 0.87153 0.87126 0.87076 0.93722 0.91702 0.84914 0.86181 0.76543 0.86457 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.20 13.97 55.49 0.78 -24.43 16 2 C 0.05 1.44 5.02 -17.43 -0.09 1.35 16 3 Si 0.85 21.10 26.39 -169.99 -4.49 16.61 16 4 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 5 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.26 -6.14 5.89 56.52 0.33 -5.81 16 7 C -0.27 -7.09 9.76 -15.06 -0.15 -7.23 16 8 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 9 N -0.58 -12.83 1.98 -175.98 -0.35 -13.18 16 10 C 0.18 3.40 5.83 -5.19 -0.03 3.37 16 11 C -0.08 -1.48 5.42 -104.62 -0.57 -2.04 16 12 C -0.10 -1.81 9.69 -39.58 -0.38 -2.19 16 13 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 14 C -0.14 -2.18 10.05 -39.58 -0.40 -2.58 16 15 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 16 C -0.12 -2.02 9.71 -39.58 -0.38 -2.41 16 17 C 0.18 3.74 3.97 -5.19 -0.02 3.72 16 18 C -0.09 -1.63 5.46 -104.60 -0.57 -2.20 16 19 C -0.07 -1.42 9.71 -39.61 -0.38 -1.81 16 20 C -0.15 -2.47 9.99 -39.43 -0.39 -2.87 16 21 C 0.08 1.26 6.71 -39.22 -0.26 1.00 16 22 O -0.50 -6.89 13.50 -19.44 -0.26 -7.15 16 23 C -0.15 -2.30 9.99 -39.44 -0.39 -2.69 16 24 C -0.11 -1.71 9.66 -39.61 -0.38 -2.09 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.05 0.88 7.97 -51.93 -0.41 0.47 16 27 H 0.06 1.11 8.01 -51.93 -0.42 0.69 16 28 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 29 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.04 0.84 8.01 -51.93 -0.42 0.42 16 34 H 0.06 1.45 4.82 -51.93 -0.25 1.20 16 35 H 0.13 2.78 8.06 -52.49 -0.42 2.35 16 36 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.38 3.20 9.06 45.56 0.41 3.61 16 38 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 333.77 15.07 5.03 5.03 Total: -1.00 -30.23 333.77 -9.01 -39.25 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -4.52 Total: 7.47 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -5.20 Total: -23.60 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.43 Total: -37.61 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.26 Total: -7.15 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.49 Total: 16.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.23 -9.01 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204098314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.475 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds