Wall clock time and date at job start Tue Mar 31 2020 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38037 * 119.94177 * 2 1 4 4 C 1.50704 * 120.06027 * 359.97438 * 3 2 1 5 5 C 1.39331 * 119.87500 * 180.26926 * 3 2 1 6 6 C 1.48365 * 120.11652 * 179.74869 * 5 3 2 7 7 C 1.38903 * 119.61130 * 173.58812 * 6 5 3 8 8 C 1.40844 * 118.76603 * 179.97438 * 7 6 5 9 9 C 1.41524 * 120.98948 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00137 * 329.39221 * 9 8 7 11 11 C 1.40049 * 119.99772 * 149.38250 * 9 8 7 12 12 N 1.30739 * 119.99450 * 167.07411 * 11 9 8 13 13 Si 1.86796 * 120.00140 * 347.07983 * 11 9 8 14 14 H 1.48497 * 109.47233 * 92.43865 * 13 11 9 15 15 H 1.48498 * 109.46910 * 212.43422 * 13 11 9 16 16 H 1.48496 * 109.47524 * 332.43408 * 13 11 9 17 17 C 1.41142 * 118.02297 * 0.02562 * 8 7 6 18 18 C 1.37741 * 119.07561 * 359.97438 * 17 8 7 19 19 N 1.31926 * 121.15396 * 359.74462 * 18 17 8 20 20 C 1.39371 * 119.75807 * 359.72652 * 5 3 2 21 21 C 1.37988 * 119.87563 * 359.97438 * 20 5 3 22 22 C 1.38302 * 119.93649 * 179.71909 * 2 1 3 23 23 C 1.50698 * 119.87864 * 0.02562 * 22 2 1 24 24 O 1.42905 * 109.47014 * 179.72581 * 23 22 2 25 25 H 1.09004 * 109.47449 * 270.27420 * 1 2 3 26 26 H 1.09000 * 109.47098 * 30.28052 * 1 2 3 27 27 H 1.09001 * 109.46905 * 150.27623 * 1 2 3 28 28 H 1.09000 * 109.46883 * 263.14902 * 4 3 2 29 29 H 1.09004 * 109.47143 * 23.14318 * 4 3 2 30 30 H 1.08992 * 109.47168 * 143.14362 * 4 3 2 31 31 H 1.08003 * 120.61615 * 359.95986 * 7 6 5 32 32 H 0.96997 * 119.99859 * 180.02562 * 12 11 9 33 33 H 1.08005 * 120.46016 * 179.97438 * 17 8 7 34 34 H 1.08002 * 119.42471 * 179.97438 * 18 17 8 35 35 H 1.07994 * 120.06151 * 179.97438 * 20 5 3 36 36 H 1.07999 * 119.93726 * 179.97438 * 21 20 5 37 37 H 1.08996 * 109.47728 * 59.72127 * 23 22 2 38 38 H 1.09007 * 109.47005 * 299.71866 * 23 22 2 39 39 H 0.96706 * 113.99581 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1961 0.0000 4 6 1.4425 2.5013 -0.0006 5 6 3.5893 1.1945 -0.0057 6 6 4.3352 2.4770 -0.0113 7 6 5.7182 2.4672 0.1179 8 6 6.4084 3.6949 0.1097 9 6 7.8170 3.7398 0.2387 10 1 8.3313 2.9818 0.8107 11 6 8.5440 4.7671 -0.3757 12 7 9.7973 4.9612 -0.0581 13 14 7.7230 5.8601 -1.6487 14 1 7.1634 7.0629 -0.9815 15 1 8.7245 6.2775 -2.6626 16 1 6.6285 5.1089 -2.3142 17 6 5.6533 4.8792 -0.0298 18 6 4.2843 4.7897 -0.1519 19 7 3.6734 3.6204 -0.1454 20 6 4.2796 -0.0162 -0.0056 21 6 3.5807 -1.2060 0.0007 22 6 2.1972 -1.1985 0.0059 23 6 1.4395 -2.5011 0.0117 24 8 2.3646 -3.5903 0.0107 25 1 -0.3634 0.0049 1.0277 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8925 -0.5095 28 1 1.3674 2.8770 -1.0210 29 1 0.4423 2.3436 0.4030 30 1 1.9727 3.2272 0.6158 31 1 6.2542 1.5355 0.2230 32 1 10.3008 5.6729 -0.4833 33 1 6.1423 5.8422 -0.0407 34 1 3.7010 5.6924 -0.2586 35 1 5.3595 -0.0232 -0.0104 36 1 4.1147 -2.1447 0.0004 37 1 0.8093 -2.5589 -0.8757 38 1 0.8161 -2.5548 0.9043 39 1 1.9459 -4.4620 0.0146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204949263.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:57 Heat of formation + Delta-G solvation = -3.251481 kcal Electronic energy + Delta-G solvation = -21335.139942 eV Core-core repulsion = 18206.921995 eV Total energy + Delta-G solvation = -3128.217947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.83686 -38.41388 -36.71447 -34.19431 -33.31153 -32.68432 -31.28619 -29.65136 -27.75225 -26.24941 -25.78625 -25.36976 -22.51288 -21.28293 -20.24612 -19.84293 -17.55785 -17.46814 -16.07525 -15.59677 -15.34538 -15.18604 -14.86031 -14.34542 -14.12074 -13.79515 -13.50487 -13.20490 -12.98537 -12.89123 -12.61955 -12.30984 -12.20510 -12.08674 -11.79208 -11.42825 -11.11483 -11.08234 -10.84998 -10.63187 -10.54844 -10.42805 -10.33678 -9.87269 -9.42794 -8.74919 -8.29522 -8.16357 -7.96366 -7.31624 -7.07623 -4.75938 1.30161 1.77726 2.49606 2.67257 3.03276 3.13897 3.23163 3.86726 4.05527 4.11067 4.57226 4.89352 5.03840 5.13730 5.18073 5.25448 5.33104 5.34863 5.50068 5.62470 5.66838 5.82611 5.90175 6.00764 6.10200 6.25671 6.36828 6.38004 6.45844 6.47412 6.51716 6.69698 6.84935 6.87378 6.95940 7.03319 7.16710 7.30772 7.38915 7.50483 7.59394 7.89629 8.17434 8.38688 8.61070 9.23820 9.93874 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026687 B = 0.004268 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.931665 B = 6558.608431 C = 7387.790434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.052 4.052 4 C -0.107 4.107 5 C -0.023 4.023 6 C 0.162 3.838 7 C -0.235 4.235 8 C 0.110 3.890 9 C -0.438 4.438 10 H 0.095 0.905 11 C 0.085 3.915 12 N -0.802 5.802 13 Si 0.917 3.083 14 H -0.268 1.268 15 H -0.290 1.290 16 H -0.245 1.245 17 C -0.285 4.285 18 C 0.114 3.886 19 N -0.554 5.554 20 C -0.110 4.110 21 C -0.105 4.105 22 C -0.101 4.101 23 C 0.123 3.877 24 O -0.568 6.568 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.288 0.712 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.425 -9.119 -0.959 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.053 4.053 4 C -0.164 4.164 5 C -0.023 4.023 6 C 0.031 3.969 7 C -0.258 4.258 8 C 0.102 3.898 9 C -0.468 4.468 10 H 0.113 0.887 11 C -0.136 4.136 12 N -0.426 5.426 13 Si 0.744 3.256 14 H -0.194 1.194 15 H -0.218 1.218 16 H -0.169 1.169 17 C -0.308 4.308 18 C -0.040 4.040 19 N -0.270 5.270 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.101 4.101 23 C 0.046 3.954 24 O -0.374 6.374 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -14.629 -8.540 -1.051 16.972 hybrid contribution 0.592 0.166 -0.428 0.749 sum -14.037 -8.375 -1.478 16.412 Atomic orbital electron populations 1.20795 0.91728 1.02461 1.01944 1.19346 0.95464 0.91806 1.03090 1.19852 0.92780 0.94916 0.97758 1.21099 0.97229 0.94711 1.03317 1.18676 0.92249 0.91742 0.99678 1.19245 0.90154 0.90548 0.96966 1.21926 0.93460 0.97932 1.12434 1.17887 0.93913 0.90640 0.87401 1.19530 0.90003 1.09480 1.27832 0.88749 1.26185 0.94757 0.95938 0.96684 1.69608 1.09497 1.27718 1.35761 0.86237 0.79331 0.80080 0.79963 1.19376 1.21756 1.16867 1.21977 0.95090 0.98251 1.15440 1.21986 0.91958 0.94774 0.95264 1.67679 1.38767 0.97433 1.23084 1.21311 1.00306 0.91390 0.99831 1.20754 0.93347 0.97880 1.00332 1.19444 0.94250 0.92717 1.03722 1.20851 0.90192 0.84720 0.99610 1.86493 1.36370 1.16754 1.97739 0.91501 0.91088 0.92189 0.91598 0.94128 0.87606 0.86966 0.90115 0.87427 0.85420 0.85450 0.85387 0.92685 0.92701 0.77527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 8.77 36.01 0.32 -0.93 16 2 C -0.10 -1.45 5.87 -104.67 -0.61 -2.06 16 3 C -0.05 -0.92 5.91 -104.29 -0.62 -1.53 16 4 C -0.11 -1.75 7.92 36.01 0.29 -1.46 16 5 C -0.02 -0.45 5.87 -104.90 -0.62 -1.06 16 6 C 0.16 3.60 6.66 -83.04 -0.55 3.04 16 7 C -0.23 -5.53 9.24 -38.35 -0.35 -5.88 16 8 C 0.11 2.75 5.15 -106.56 -0.55 2.20 16 9 C -0.44 -11.62 9.66 -37.65 -0.36 -11.98 16 10 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 11 C 0.08 2.17 5.48 -17.34 -0.09 2.08 16 12 N -0.80 -20.83 13.92 55.55 0.77 -20.06 16 13 Si 0.92 20.41 24.44 -169.99 -4.15 16.26 16 14 H -0.27 -5.71 6.65 56.52 0.38 -5.33 16 15 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.25 -5.68 6.70 56.52 0.38 -5.30 16 17 C -0.29 -6.73 7.14 -38.66 -0.28 -7.01 16 18 C 0.11 2.47 11.15 -17.69 -0.20 2.27 16 19 N -0.55 -12.10 6.19 -9.94 -0.06 -12.16 16 20 C -0.11 -1.97 9.40 -39.25 -0.37 -2.34 16 21 C -0.11 -1.70 9.36 -39.63 -0.37 -2.07 16 22 C -0.10 -1.48 5.88 -104.56 -0.62 -2.10 16 23 C 0.12 1.33 6.15 36.00 0.22 1.55 16 24 O -0.57 -6.04 12.13 -35.23 -0.43 -6.47 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.76 6.57 -51.93 -0.34 0.42 16 27 H 0.06 0.54 6.62 -51.93 -0.34 0.20 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.55 6.32 -51.93 -0.33 0.22 16 30 H 0.11 1.94 5.67 -51.93 -0.29 1.65 16 31 H 0.11 2.48 6.23 -52.48 -0.33 2.15 16 32 H 0.29 6.76 8.29 -40.82 -0.34 6.42 16 33 H 0.11 2.48 4.48 -52.48 -0.24 2.25 16 34 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 35 H 0.13 2.22 6.23 -52.49 -0.33 1.89 16 36 H 0.13 1.94 6.99 -52.49 -0.37 1.57 16 37 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 38 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 39 H 0.38 2.00 9.12 45.56 0.42 2.42 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -29.31 311.29 -7.78 -37.08 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -3.83 Total: 7.93 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -4.77 Total: -27.28 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.71 Total: -32.22 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.43 Total: -6.47 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.15 Total: 16.26 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.31 -7.78 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204949263.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.833 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds