Wall clock time and date at job start Tue Mar 31 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37959 * 119.92914 * 2 1 4 4 C 1.50700 * 120.07320 * 0.02562 * 3 2 1 5 5 C 1.39598 * 119.85061 * 180.23123 * 3 2 1 6 6 C 1.47967 * 120.14251 * 179.74695 * 5 3 2 7 7 C 1.40267 * 120.34775 * 129.74409 * 6 5 3 8 8 C 1.36685 * 118.60561 * 179.74689 * 7 6 5 9 9 C 1.40869 * 119.25514 * 0.52628 * 8 7 6 10 10 C 1.40991 * 119.68569 * 179.71784 * 9 8 7 11 11 H 1.08005 * 119.99176 * 0.02562 * 10 9 8 12 12 C 1.40102 * 120.00413 * 180.02562 * 10 9 8 13 13 N 1.30716 * 119.99811 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00134 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46948 * 90.00079 * 14 12 10 16 16 H 1.48502 * 109.47481 * 209.99925 * 14 12 10 17 17 H 1.48505 * 109.47336 * 330.00233 * 14 12 10 18 18 N 1.33785 * 120.63700 * 359.73904 * 9 8 7 19 19 C 1.31191 * 121.50573 * 359.97438 * 18 9 8 20 20 C 1.39644 * 119.71103 * 359.76536 * 5 3 2 21 21 C 1.37911 * 119.85045 * 0.02562 * 20 5 3 22 22 C 1.38374 * 119.92778 * 179.74712 * 2 1 3 23 23 C 1.50699 * 119.84933 * 0.02562 * 22 2 1 24 24 O 1.42903 * 109.47152 * 179.72992 * 23 22 2 25 25 H 1.09000 * 109.47262 * 270.25290 * 1 2 3 26 26 H 1.08997 * 109.47300 * 30.25565 * 1 2 3 27 27 H 1.09006 * 109.47381 * 150.25366 * 1 2 3 28 28 H 1.09001 * 109.47151 * 270.23326 * 4 3 2 29 29 H 1.09004 * 109.47398 * 30.22677 * 4 3 2 30 30 H 1.08990 * 109.47578 * 150.23229 * 4 3 2 31 31 H 1.08004 * 120.69369 * 0.02562 * 7 6 5 32 32 H 1.08005 * 120.37162 * 180.24306 * 8 7 6 33 33 H 0.96994 * 119.99721 * 179.97438 * 13 12 10 34 34 H 1.07994 * 119.65638 * 179.97438 * 19 18 9 35 35 H 1.08000 * 120.07236 * 179.97438 * 20 5 3 36 36 H 1.07993 * 119.92160 * 180.02562 * 21 20 5 37 37 H 1.08997 * 109.47198 * 59.72670 * 23 22 2 38 38 H 1.09008 * 109.47393 * 299.72387 * 23 22 2 39 39 H 0.96700 * 114.00311 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1956 0.0000 4 6 1.4418 2.5007 0.0006 5 6 3.5913 1.1937 -0.0049 6 6 4.3360 2.4723 -0.0106 7 6 5.3647 2.6973 0.9160 8 6 6.0328 3.8891 0.8755 9 6 5.6628 4.8535 -0.0823 10 6 6.3418 6.0883 -0.1283 11 1 7.1418 6.2908 0.5685 12 6 5.9790 7.0524 -1.0778 13 7 5.0111 6.8070 -1.9214 14 14 6.8782 8.6885 -1.1382 15 1 8.0402 8.5811 -2.0567 16 1 5.9550 9.7430 -1.6293 17 1 7.3544 9.0423 0.2232 18 7 4.6729 4.6093 -0.9485 19 6 4.0173 3.4730 -0.9378 20 6 4.2817 -0.0201 -0.0048 21 6 3.5814 -1.2082 -0.0004 22 6 2.1973 -1.1992 0.0053 23 6 1.4388 -2.5014 0.0105 24 8 2.3631 -3.5911 0.0090 25 1 -0.3634 0.0045 1.0276 26 1 -0.3634 0.8876 -0.5178 27 1 -0.3634 -0.8923 -0.5099 28 1 1.2562 2.8136 -1.0269 29 1 0.4913 2.3714 0.5183 30 1 2.0328 3.2613 0.5107 31 1 5.6264 1.9429 1.6433 32 1 6.8324 4.0909 1.5730 33 1 4.7596 7.4747 -2.5786 34 1 3.2230 3.3076 -1.6505 35 1 5.3617 -0.0284 -0.0090 36 1 4.1142 -2.1475 0.0001 37 1 0.8086 -2.5583 -0.8770 38 1 0.8152 -2.5551 0.9029 39 1 1.9439 -4.4626 0.0118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204969613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:00 Heat of formation + Delta-G solvation = -9.430957 kcal Electronic energy + Delta-G solvation = -21195.508621 eV Core-core repulsion = 18067.022712 eV Total energy + Delta-G solvation = -3128.485909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.60052 -38.06074 -36.65378 -33.99639 -33.01701 -32.53931 -30.64665 -29.59058 -27.66649 -26.66331 -25.75445 -24.47739 -21.85654 -21.45274 -20.30111 -19.45755 -17.59079 -17.40019 -15.84596 -15.60664 -15.11313 -15.03796 -14.64299 -14.29863 -14.04375 -13.58329 -13.34475 -12.89842 -12.58881 -12.48682 -12.39360 -12.25898 -12.11561 -11.86420 -11.49476 -11.34445 -11.18840 -11.12372 -11.02284 -10.69856 -10.42729 -10.28150 -10.25671 -9.90758 -9.45581 -8.45334 -8.15674 -8.08038 -7.61569 -7.26811 -6.50443 -4.59139 1.67742 1.87552 2.70847 3.03004 3.05031 3.06276 3.14079 3.85901 4.17796 4.19726 4.66688 5.02299 5.20316 5.25944 5.32264 5.40267 5.52165 5.61365 5.71809 5.78908 5.84179 5.95314 6.02154 6.08989 6.17828 6.18485 6.21809 6.39876 6.58301 6.66758 6.75229 6.81976 6.92276 6.97647 7.04303 7.20884 7.34648 7.45510 7.55496 7.61609 7.76597 7.96815 8.12942 8.54314 8.83246 10.02724 10.19501 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036279 B = 0.003620 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.609823 B = 7733.709110 C = 8220.509659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.093 4.093 4 C -0.109 4.109 5 C 0.026 3.974 6 C -0.274 4.274 7 C -0.035 4.035 8 C -0.274 4.274 9 C 0.254 3.746 10 C -0.418 4.418 11 H 0.086 0.914 12 C 0.066 3.934 13 N -0.705 5.705 14 Si 0.910 3.090 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.260 1.260 18 N -0.488 5.488 19 C 0.156 3.844 20 C -0.134 4.134 21 C -0.095 4.095 22 C -0.125 4.125 23 C 0.127 3.873 24 O -0.569 6.569 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.275 0.725 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.687 -11.349 2.101 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.166 4.166 5 C 0.025 3.975 6 C -0.280 4.280 7 C -0.059 4.059 8 C -0.297 4.297 9 C 0.131 3.869 10 C -0.448 4.448 11 H 0.104 0.896 12 C -0.161 4.161 13 N -0.325 5.325 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.184 1.184 18 N -0.200 5.200 19 C -0.012 4.012 20 C -0.152 4.152 21 C -0.113 4.113 22 C -0.125 4.125 23 C 0.049 3.951 24 O -0.374 6.374 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.548 -10.035 1.326 12.627 hybrid contribution 0.260 -0.508 0.588 0.820 sum -7.287 -10.544 1.914 12.959 Atomic orbital electron populations 1.20804 0.92038 1.02393 1.01837 1.19252 0.95116 0.91867 1.01925 1.19778 0.93142 0.94196 1.02238 1.20816 0.98971 0.94861 1.01926 1.18789 0.91574 0.92843 0.94318 1.18998 1.05891 0.96230 1.06844 1.20586 0.93551 0.95853 0.95865 1.21399 1.05762 0.96888 1.05621 1.18634 0.88957 0.92222 0.87130 1.19709 1.14530 0.97297 1.13235 0.89637 1.26153 0.94783 1.00445 0.94723 1.70123 1.19335 1.32824 1.10219 0.86290 0.79894 0.80650 0.79841 1.19264 1.19973 1.18422 1.68809 1.08729 1.18099 1.24344 1.22723 0.95748 0.88846 0.93896 1.21292 0.99563 0.91700 1.02625 1.20740 0.93373 0.97804 0.99386 1.19306 0.94150 0.92481 1.06548 1.20813 0.90146 0.84780 0.99315 1.86489 1.36489 1.16719 1.97737 0.91579 0.91239 0.92214 0.91602 0.92592 0.90654 0.88704 0.88289 0.91352 0.86338 0.86592 0.86010 0.92974 0.93042 0.77705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 8.77 36.00 0.32 -1.01 16 2 C -0.08 -1.26 5.87 -104.68 -0.61 -1.87 16 3 C -0.09 -1.65 5.88 -104.22 -0.61 -2.27 16 4 C -0.11 -1.80 7.63 36.01 0.27 -1.53 16 5 C 0.03 0.51 5.49 -104.88 -0.58 -0.07 16 6 C -0.27 -6.14 4.75 -104.45 -0.50 -6.63 16 7 C -0.04 -0.79 9.60 -39.38 -0.38 -1.17 16 8 C -0.27 -6.68 9.76 -39.15 -0.38 -7.06 16 9 C 0.25 6.84 6.55 -84.98 -0.56 6.28 16 10 C -0.42 -10.93 9.12 -37.84 -0.35 -11.27 16 11 H 0.09 2.08 7.85 -52.48 -0.41 1.67 16 12 C 0.07 1.63 5.50 -17.33 -0.10 1.53 16 13 N -0.70 -18.32 11.44 55.55 0.64 -17.69 16 14 Si 0.91 18.07 29.56 -169.99 -5.02 13.05 16 15 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 18 N -0.49 -13.25 7.83 -10.85 -0.08 -13.33 16 19 C 0.16 3.75 9.09 -17.13 -0.16 3.60 16 20 C -0.13 -2.45 9.55 -39.18 -0.37 -2.83 16 21 C -0.10 -1.59 9.36 -39.64 -0.37 -1.96 16 22 C -0.12 -1.91 5.89 -104.51 -0.62 -2.52 16 23 C 0.13 1.45 6.15 36.01 0.22 1.67 16 24 O -0.57 -6.39 12.12 -35.23 -0.43 -6.82 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.78 6.71 -51.93 -0.35 0.43 16 27 H 0.06 0.58 6.61 -51.93 -0.34 0.24 16 28 H 0.07 1.05 7.51 -51.93 -0.39 0.66 16 29 H 0.06 0.78 6.72 -51.93 -0.35 0.43 16 30 H 0.07 1.43 6.47 -51.93 -0.34 1.09 16 31 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 32 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 33 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 34 H 0.12 2.65 6.86 -52.49 -0.36 2.29 16 35 H 0.12 2.07 8.05 -52.49 -0.42 1.64 16 36 H 0.12 1.92 6.99 -52.49 -0.37 1.55 16 37 H 0.05 0.52 7.47 -51.93 -0.39 0.13 16 38 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.38 2.19 9.12 45.56 0.42 2.61 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -30.06 322.28 -8.93 -38.99 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.12 Total: 8.04 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -4.76 Total: -27.10 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.55 Total: -31.02 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.43 Total: -6.82 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.02 Total: 13.05 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.06 -8.93 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204969613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.561 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds