Wall clock time and date at job start Tue Mar 31 2020 05:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37959 * 119.92914 * 2 1 4 4 C 1.50700 * 120.07320 * 0.02562 * 3 2 1 5 5 C 1.39598 * 119.85061 * 180.23123 * 3 2 1 6 6 C 1.47967 * 120.14251 * 179.74695 * 5 3 2 7 7 C 1.40267 * 120.34775 * 129.74409 * 6 5 3 8 8 C 1.36685 * 118.60561 * 179.74689 * 7 6 5 9 9 C 1.40869 * 119.25514 * 0.52628 * 8 7 6 10 10 C 1.40991 * 119.68569 * 179.71784 * 9 8 7 11 11 H 1.08005 * 119.99176 * 0.02562 * 10 9 8 12 12 C 1.40102 * 120.00413 * 180.02562 * 10 9 8 13 13 N 1.30716 * 119.99811 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00134 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46948 * 90.00079 * 14 12 10 16 16 H 1.48502 * 109.47481 * 209.99925 * 14 12 10 17 17 H 1.48505 * 109.47336 * 330.00233 * 14 12 10 18 18 N 1.33785 * 120.63700 * 359.73904 * 9 8 7 19 19 C 1.31191 * 121.50573 * 359.97438 * 18 9 8 20 20 C 1.39644 * 119.71103 * 359.76536 * 5 3 2 21 21 C 1.37911 * 119.85045 * 0.02562 * 20 5 3 22 22 C 1.38374 * 119.92778 * 179.74712 * 2 1 3 23 23 C 1.50699 * 119.84933 * 0.02562 * 22 2 1 24 24 O 1.42903 * 109.47152 * 179.72992 * 23 22 2 25 25 H 1.09000 * 109.47262 * 270.25290 * 1 2 3 26 26 H 1.08997 * 109.47300 * 30.25565 * 1 2 3 27 27 H 1.09006 * 109.47381 * 150.25366 * 1 2 3 28 28 H 1.09001 * 109.47151 * 270.23326 * 4 3 2 29 29 H 1.09004 * 109.47398 * 30.22677 * 4 3 2 30 30 H 1.08990 * 109.47578 * 150.23229 * 4 3 2 31 31 H 1.08004 * 120.69369 * 0.02562 * 7 6 5 32 32 H 1.08005 * 120.37162 * 180.24306 * 8 7 6 33 33 H 0.96994 * 119.99721 * 179.97438 * 13 12 10 34 34 H 1.07994 * 119.65638 * 179.97438 * 19 18 9 35 35 H 1.08000 * 120.07236 * 179.97438 * 20 5 3 36 36 H 1.07993 * 119.92160 * 180.02562 * 21 20 5 37 37 H 1.08997 * 109.47198 * 59.72670 * 23 22 2 38 38 H 1.09008 * 109.47393 * 299.72387 * 23 22 2 39 39 H 0.96700 * 114.00311 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1956 0.0000 4 6 1.4418 2.5007 0.0006 5 6 3.5913 1.1937 -0.0049 6 6 4.3360 2.4723 -0.0106 7 6 5.3647 2.6973 0.9160 8 6 6.0328 3.8891 0.8755 9 6 5.6628 4.8535 -0.0823 10 6 6.3418 6.0883 -0.1283 11 1 7.1418 6.2908 0.5685 12 6 5.9790 7.0524 -1.0778 13 7 5.0111 6.8070 -1.9214 14 14 6.8782 8.6885 -1.1382 15 1 8.0402 8.5811 -2.0567 16 1 5.9550 9.7430 -1.6293 17 1 7.3544 9.0423 0.2232 18 7 4.6729 4.6093 -0.9485 19 6 4.0173 3.4730 -0.9378 20 6 4.2817 -0.0201 -0.0048 21 6 3.5814 -1.2082 -0.0004 22 6 2.1973 -1.1992 0.0053 23 6 1.4388 -2.5014 0.0105 24 8 2.3631 -3.5911 0.0090 25 1 -0.3634 0.0045 1.0276 26 1 -0.3634 0.8876 -0.5178 27 1 -0.3634 -0.8923 -0.5099 28 1 1.2562 2.8136 -1.0269 29 1 0.4913 2.3714 0.5183 30 1 2.0328 3.2613 0.5107 31 1 5.6264 1.9429 1.6433 32 1 6.8324 4.0909 1.5730 33 1 4.7596 7.4747 -2.5786 34 1 3.2230 3.3076 -1.6505 35 1 5.3617 -0.0284 -0.0090 36 1 4.1142 -2.1475 0.0001 37 1 0.8086 -2.5583 -0.8770 38 1 0.8152 -2.5551 0.9029 39 1 1.9439 -4.4626 0.0118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204969613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:59 Heat of formation + Delta-G solvation = -27.332455 kcal Electronic energy + Delta-G solvation = -21196.284888 eV Core-core repulsion = 18067.022712 eV Total energy + Delta-G solvation = -3129.262176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99535 -39.76084 -37.61208 -35.72584 -34.34660 -33.96417 -32.51004 -31.27996 -28.78654 -28.24042 -27.03544 -25.89196 -23.69924 -23.15176 -21.59013 -20.87045 -19.43347 -18.33828 -17.54636 -17.09411 -16.44636 -16.10443 -15.98938 -15.84366 -15.76070 -14.83064 -14.60169 -14.42082 -14.10419 -13.95552 -13.76381 -13.56093 -13.45278 -13.24945 -12.97732 -12.80337 -12.72032 -12.64633 -12.54474 -12.24811 -11.83575 -11.70739 -11.46490 -11.26017 -11.08650 -10.26011 -9.82874 -9.52694 -9.37482 -8.90569 -8.34414 -6.52520 0.24694 0.55014 0.96305 1.19316 1.39754 1.52580 1.55394 2.20265 2.73509 2.92432 3.38856 3.86539 3.96999 4.03925 4.12677 4.14514 4.18493 4.35548 4.37708 4.49537 4.51371 4.61893 4.77744 4.81804 4.86463 4.88584 4.90087 4.96298 5.02351 5.10038 5.14573 5.29960 5.42916 5.43873 5.59197 5.63066 5.72434 5.84363 5.99811 6.09206 6.21307 6.26113 6.66397 6.90674 6.99963 8.12840 8.38346 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036279 B = 0.003620 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.609823 B = 7733.709110 C = 8220.509659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.102 4.102 4 C -0.103 4.103 5 C -0.012 4.012 6 C -0.255 4.255 7 C -0.041 4.041 8 C -0.288 4.288 9 C 0.222 3.778 10 C -0.456 4.456 11 H 0.092 0.908 12 C 0.022 3.978 13 N -0.748 5.748 14 Si 0.991 3.009 15 H -0.262 1.262 16 H -0.266 1.266 17 H -0.254 1.254 18 N -0.520 5.520 19 C 0.139 3.861 20 C -0.142 4.142 21 C -0.103 4.103 22 C -0.120 4.120 23 C 0.128 3.872 24 O -0.590 6.590 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.282 0.718 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 -13.208 2.494 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.102 4.102 4 C -0.160 4.160 5 C -0.013 4.013 6 C -0.260 4.260 7 C -0.065 4.065 8 C -0.310 4.310 9 C 0.098 3.902 10 C -0.487 4.487 11 H 0.110 0.890 12 C -0.201 4.201 13 N -0.369 5.369 14 Si 0.810 3.190 15 H -0.187 1.187 16 H -0.191 1.191 17 H -0.177 1.177 18 N -0.232 5.232 19 C -0.028 4.028 20 C -0.161 4.161 21 C -0.121 4.121 22 C -0.120 4.120 23 C 0.051 3.949 24 O -0.399 6.399 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -9.316 -11.951 1.724 15.251 hybrid contribution 0.659 -0.262 0.502 0.869 sum -8.657 -12.213 2.226 15.134 Atomic orbital electron populations 1.20901 0.88806 1.03946 1.03338 1.19650 0.97404 0.90805 1.00236 1.19977 0.92446 0.95691 1.02101 1.20758 0.99656 0.93563 1.02004 1.18757 0.92707 0.91870 0.97933 1.19254 1.04892 0.96845 1.05004 1.20890 0.93454 0.95816 0.96327 1.21578 1.06553 0.97235 1.05670 1.19062 0.89612 0.93453 0.88086 1.20051 1.15651 0.98171 1.14815 0.89000 1.27086 0.95302 1.04055 0.93660 1.70217 1.21029 1.34488 1.11161 0.85087 0.78460 0.75425 0.80018 1.18679 1.19068 1.17750 1.68734 1.09574 1.19638 1.25286 1.22927 0.96068 0.88982 0.94774 1.21310 0.99558 0.92064 1.03136 1.20895 0.94439 0.97275 0.99531 1.19880 0.93885 0.94673 1.03539 1.20871 0.89687 0.82910 1.01447 1.86423 1.37454 1.18162 1.97837 0.89890 0.90874 0.89632 0.91423 0.89624 0.93916 0.86377 0.87106 0.90768 0.85539 0.87078 0.85149 0.90666 0.90667 0.74881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 8.77 71.23 0.62 -1.50 16 2 C -0.08 -2.25 5.87 -19.90 -0.12 -2.37 16 3 C -0.10 -3.51 5.88 -19.60 -0.12 -3.62 16 4 C -0.10 -3.36 7.63 71.24 0.54 -2.82 16 5 C -0.01 -0.47 5.49 -20.03 -0.11 -0.58 16 6 C -0.25 -11.77 4.75 -19.75 -0.09 -11.86 16 7 C -0.04 -1.92 9.60 22.40 0.22 -1.70 16 8 C -0.29 -14.60 9.76 22.55 0.22 -14.38 16 9 C 0.22 12.56 6.55 40.16 0.26 12.82 16 10 C -0.46 -24.95 9.12 23.40 0.21 -24.74 16 11 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 12 C 0.02 1.10 5.50 85.31 0.47 1.57 16 13 N -0.75 -40.48 11.44 21.85 0.25 -40.23 16 14 Si 0.99 37.84 29.56 68.60 2.03 39.87 16 15 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 16 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 17 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 18 N -0.52 -29.72 7.83 -188.23 -1.47 -31.20 16 19 C 0.14 6.99 9.09 85.24 0.78 7.76 16 20 C -0.14 -5.21 9.55 22.53 0.22 -4.99 16 21 C -0.10 -3.28 9.36 22.23 0.21 -3.07 16 22 C -0.12 -3.28 5.89 -19.79 -0.12 -3.40 16 23 C 0.13 2.33 6.15 71.24 0.44 2.77 16 24 O -0.59 -10.91 12.12 -148.98 -1.81 -12.72 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.34 6.71 -2.39 -0.02 1.33 16 27 H 0.08 1.19 6.61 -2.38 -0.02 1.17 16 28 H 0.07 2.14 7.51 -2.39 -0.02 2.12 16 29 H 0.09 2.21 6.72 -2.38 -0.02 2.19 16 30 H 0.04 1.66 6.47 -2.39 -0.02 1.64 16 31 H 0.12 4.83 8.06 -2.91 -0.02 4.80 16 32 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 33 H 0.28 13.68 8.29 -92.71 -0.77 12.91 16 34 H 0.13 5.95 6.86 -2.91 -0.02 5.93 16 35 H 0.11 4.02 8.05 -2.91 -0.02 4.00 16 36 H 0.13 3.87 6.99 -2.91 -0.02 3.85 16 37 H 0.08 1.08 7.47 -2.39 -0.02 1.06 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.40 2.99 9.12 -74.06 -0.68 2.31 16 Total: -1.00 -68.50 322.28 3.03 -65.46 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.41 Total: 28.92 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 3.63 Total: -50.11 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -1.22 Total: -71.43 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.81 Total: -12.72 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -68.50 3.03 -65.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204969613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.132 kcal (2) G-P(sol) polarization free energy of solvation -68.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds