Wall clock time and date at job start Tue Mar 31 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37936 * 119.92576 * 2 1 4 4 C 1.50705 * 120.07443 * 0.02562 * 3 2 1 5 5 C 1.39664 * 119.84851 * 180.27169 * 3 2 1 6 6 C 1.47826 * 120.15334 * 179.75332 * 5 3 2 7 7 C 1.39678 * 120.64873 * 244.98187 * 6 5 3 8 8 C 1.38386 * 118.47333 * 180.02562 * 7 6 5 9 9 C 1.39055 * 119.72871 * 359.97438 * 8 7 6 10 10 N 1.31280 * 121.33647 * 0.02562 * 9 8 7 11 11 C 1.33695 * 121.63353 * 359.70201 * 10 9 8 12 12 C 1.40824 * 119.93527 * 180.29054 * 11 10 9 13 13 H 1.07999 * 119.99813 * 180.29232 * 12 11 10 14 14 C 1.40156 * 120.00112 * 0.29006 * 12 11 10 15 15 N 1.30689 * 119.99774 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99886 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47066 * 90.00269 * 16 14 12 18 18 H 1.48494 * 109.47340 * 209.99914 * 16 14 12 19 19 H 1.48502 * 109.47366 * 330.00276 * 16 14 12 20 20 C 1.39706 * 119.69402 * 359.73233 * 5 3 2 21 21 C 1.37893 * 119.84836 * 0.02562 * 20 5 3 22 22 C 1.38384 * 119.92753 * 179.73550 * 2 1 3 23 23 C 1.50699 * 119.84115 * 359.97438 * 22 2 1 24 24 O 1.42903 * 109.47152 * 179.73462 * 23 22 2 25 25 H 1.08999 * 109.46820 * 270.26531 * 1 2 3 26 26 H 1.08998 * 109.47267 * 30.26824 * 1 2 3 27 27 H 1.08999 * 109.47202 * 150.27421 * 1 2 3 28 28 H 1.08991 * 109.47208 * 270.26870 * 4 3 2 29 29 H 1.08999 * 109.47050 * 30.27704 * 4 3 2 30 30 H 1.09005 * 109.46985 * 150.26728 * 4 3 2 31 31 H 1.08004 * 120.76154 * 0.02562 * 7 6 5 32 32 H 1.08004 * 120.13437 * 179.97438 * 8 7 6 33 33 H 1.08003 * 119.33257 * 179.97438 * 9 8 7 34 34 H 0.97006 * 119.99686 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.07721 * 179.97438 * 20 5 3 36 36 H 1.07997 * 119.92387 * 179.97438 * 21 20 5 37 37 H 1.08997 * 109.47198 * 59.73140 * 23 22 2 38 38 H 1.09008 * 109.47393 * 299.72857 * 23 22 2 39 39 H 0.96700 * 114.00311 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1955 0.0000 4 6 1.4416 2.5006 0.0006 5 6 3.5917 1.1936 -0.0057 6 6 4.3360 2.4708 -0.0113 7 6 5.1291 2.8280 -1.1042 8 6 5.8067 4.0339 -1.0615 9 6 5.6847 4.8543 0.0546 10 7 4.9367 4.5095 1.0769 11 6 4.2545 3.3598 1.0905 12 6 3.4580 3.0284 2.2035 13 1 2.9103 2.0977 2.2176 14 6 3.3761 3.9063 3.2930 15 7 4.0385 5.0327 3.2757 16 14 2.3189 3.4669 4.7691 17 1 3.1346 2.7140 5.7555 18 1 1.8053 4.7103 5.3977 19 1 1.1766 2.6271 4.3274 20 6 4.2822 -0.0209 -0.0058 21 6 3.5816 -1.2087 -0.0007 22 6 2.1974 -1.1993 0.0055 23 6 1.4386 -2.5013 0.0121 24 8 2.3628 -3.5913 0.0108 25 1 -0.3633 0.0048 1.0277 26 1 -0.3634 0.8875 -0.5180 27 1 -0.3633 -0.8924 -0.5096 28 1 1.2553 2.8131 -1.0268 29 1 0.4915 2.3714 0.5190 30 1 2.0330 3.2613 0.5102 31 1 5.2115 2.1781 -1.9628 32 1 6.4278 4.3365 -1.8916 33 1 6.2167 5.7938 0.0813 34 1 3.9816 5.6405 4.0296 35 1 5.3621 -0.0296 -0.0106 36 1 4.1141 -2.1482 -0.0011 37 1 0.8078 -2.5587 -0.8749 38 1 0.8157 -2.5544 0.9051 39 1 1.9435 -4.4626 0.0144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204983705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:05 Heat of formation + Delta-G solvation = -4.549116 kcal Electronic energy + Delta-G solvation = -22046.203935 eV Core-core repulsion = 18917.929718 eV Total energy + Delta-G solvation = -3128.274216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.50227 -37.98608 -36.50949 -33.75735 -33.05959 -32.56698 -30.40167 -29.44062 -27.49965 -26.30086 -25.45855 -24.86799 -21.93779 -21.24032 -20.14480 -19.23145 -17.50156 -17.34287 -15.77867 -15.52192 -14.99220 -14.81320 -14.58875 -14.28358 -14.11887 -13.36271 -13.22746 -12.84136 -12.41653 -12.34671 -12.30880 -12.19994 -11.99085 -11.70056 -11.23337 -11.17640 -11.16385 -11.07852 -10.93759 -10.51073 -10.27140 -10.21422 -10.18016 -9.79347 -9.39626 -8.31263 -7.95735 -7.89024 -7.58284 -7.24846 -6.46950 -4.55952 1.89146 2.07352 2.70657 2.97450 3.05468 3.09087 3.19429 3.90050 4.29210 4.34983 4.69437 5.15450 5.36026 5.38630 5.46841 5.54256 5.68444 5.79799 5.85414 5.88708 5.98481 6.09688 6.12576 6.22656 6.32429 6.39126 6.43394 6.53189 6.68167 6.76213 6.85163 6.96677 7.08962 7.12141 7.20879 7.33588 7.44044 7.54896 7.65821 7.71089 7.79671 8.01150 8.21986 8.58339 8.87956 10.04550 10.22945 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.006785 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.194208 B = 4125.579889 C = 5238.420955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.068 4.068 4 C -0.124 4.124 5 C 0.029 3.971 6 C -0.231 4.231 7 C -0.036 4.036 8 C -0.320 4.320 9 C 0.129 3.871 10 N -0.483 5.483 11 C 0.270 3.730 12 C -0.415 4.415 13 H 0.090 0.910 14 C 0.069 3.931 15 N -0.709 5.709 16 Si 0.900 3.100 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.128 4.128 21 C -0.101 4.101 22 C -0.119 4.119 23 C 0.127 3.873 24 O -0.569 6.569 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.274 0.726 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.402 -9.205 -3.722 11.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.068 4.068 4 C -0.180 4.180 5 C 0.028 3.972 6 C -0.235 4.235 7 C -0.060 4.060 8 C -0.343 4.343 9 C -0.039 4.039 10 N -0.195 5.195 11 C 0.146 3.854 12 C -0.445 4.445 13 H 0.108 0.892 14 C -0.157 4.157 15 N -0.329 5.329 16 Si 0.724 3.276 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.182 1.182 20 C -0.146 4.146 21 C -0.119 4.119 22 C -0.119 4.119 23 C 0.049 3.951 24 O -0.374 6.374 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.034 -7.966 -2.828 10.386 hybrid contribution -0.613 -1.187 -0.129 1.342 sum -6.646 -9.153 -2.957 11.692 Atomic orbital electron populations 1.20784 0.92165 1.02090 1.01886 1.19275 0.95117 0.91950 1.02634 1.19813 0.93091 0.94192 0.99753 1.21049 0.99746 0.96093 1.01089 1.18614 0.91672 0.92480 0.94423 1.19323 1.08144 0.97234 0.98845 1.20848 0.94166 0.95256 0.95759 1.21200 1.11581 0.99594 1.01954 1.22577 0.94533 0.97079 0.89679 1.68766 1.09217 1.17146 1.24323 1.18484 0.89770 0.86556 0.90586 1.19660 1.22288 1.04128 0.98449 0.89231 1.26120 0.95409 0.94458 0.99755 1.70115 1.28425 1.06122 1.28246 0.86415 0.80892 0.79127 0.81146 1.19275 1.19990 1.18239 1.21291 0.99414 0.91737 1.02138 1.20685 0.93338 0.97684 1.00193 1.19303 0.94137 0.92400 1.06098 1.20821 0.90156 0.84807 0.99273 1.86495 1.36488 1.16657 1.97740 0.91545 0.91351 0.92428 0.92859 0.92766 0.87900 0.88718 0.88797 0.86479 0.91471 0.86778 0.86117 0.93073 0.93002 0.77839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 8.76 36.00 0.32 -1.22 16 2 C -0.09 -1.57 5.87 -104.68 -0.61 -2.18 16 3 C -0.07 -1.37 4.87 -104.20 -0.51 -1.88 16 4 C -0.12 -2.41 8.33 36.01 0.30 -2.11 16 5 C 0.03 0.63 4.47 -104.89 -0.47 0.16 16 6 C -0.23 -5.53 4.68 -104.07 -0.49 -6.01 16 7 C -0.04 -0.81 9.88 -38.99 -0.39 -1.20 16 8 C -0.32 -7.13 10.10 -39.22 -0.40 -7.53 16 9 C 0.13 3.09 11.17 -17.48 -0.20 2.89 16 10 N -0.48 -13.03 7.85 -10.91 -0.09 -13.11 16 11 C 0.27 7.11 5.54 -84.71 -0.47 6.64 16 12 C -0.42 -10.72 6.77 -37.88 -0.26 -10.98 16 13 H 0.09 2.27 5.88 -52.49 -0.31 1.96 16 14 C 0.07 1.71 5.50 -17.32 -0.10 1.62 16 15 N -0.71 -18.38 11.46 55.56 0.64 -17.74 16 16 Si 0.90 18.48 29.56 -169.99 -5.03 13.46 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 19 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 20 C -0.13 -2.57 9.76 -39.16 -0.38 -2.95 16 21 C -0.10 -1.85 9.36 -39.64 -0.37 -2.22 16 22 C -0.12 -2.02 5.89 -104.50 -0.62 -2.64 16 23 C 0.13 1.63 6.15 36.01 0.22 1.85 16 24 O -0.57 -7.04 12.12 -35.23 -0.43 -7.47 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.89 6.71 -51.93 -0.35 0.55 16 27 H 0.06 0.65 6.61 -51.93 -0.34 0.30 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.93 6.72 -51.93 -0.35 0.58 16 30 H 0.10 2.35 4.31 -51.93 -0.22 2.13 16 31 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 32 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 33 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 34 H 0.27 6.45 8.29 -40.82 -0.34 6.11 16 35 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.12 2.07 6.99 -52.49 -0.37 1.70 16 37 H 0.05 0.57 7.46 -51.93 -0.39 0.18 16 38 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.38 2.58 9.12 45.56 0.42 3.00 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -29.84 318.16 -8.52 -38.36 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.01 Total: 9.46 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -4.41 Total: -27.75 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.55 Total: -30.86 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.43 Total: -7.47 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.84 -8.52 -38.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204983705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.813 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds