Wall clock time and date at job start Tue Mar 31 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37946 * 119.92409 * 2 1 4 4 C 1.50702 * 120.07888 * 0.02562 * 3 2 1 5 5 C 1.39657 * 119.84322 * 180.29306 * 3 2 1 6 6 C 1.47852 * 120.14779 * 179.74673 * 5 3 2 7 7 C 1.39302 * 120.77902 * 244.70104 * 6 5 3 8 8 N 1.31681 * 120.65666 * 179.68168 * 7 6 5 9 9 C 1.32205 * 122.50321 * 0.63837 * 8 7 6 10 10 C 1.36490 * 121.50714 * 359.65332 * 9 8 7 11 11 C 1.41116 * 119.10623 * 0.02562 * 10 9 8 12 12 C 1.40939 * 121.11006 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99908 * 151.85133 * 12 11 10 14 14 C 1.40179 * 119.99833 * 331.85343 * 12 11 10 15 15 N 1.30681 * 120.00104 * 160.82295 * 14 12 11 16 16 Si 1.86799 * 119.99758 * 340.81603 * 14 12 11 17 17 H 1.48504 * 109.47177 * 95.45771 * 16 14 12 18 18 H 1.48506 * 109.47077 * 215.45559 * 16 14 12 19 19 H 1.48502 * 109.47377 * 335.45724 * 16 14 12 20 20 C 1.39689 * 119.69743 * 359.72948 * 5 3 2 21 21 C 1.37892 * 119.85277 * 359.97438 * 20 5 3 22 22 C 1.38380 * 119.92544 * 179.74921 * 2 1 3 23 23 C 1.50701 * 119.84747 * 359.97158 * 22 2 1 24 24 O 1.42899 * 109.47100 * 179.72798 * 23 22 2 25 25 H 1.09001 * 109.46454 * 270.25195 * 1 2 3 26 26 H 1.08998 * 109.47318 * 30.25062 * 1 2 3 27 27 H 1.08998 * 109.47122 * 150.25740 * 1 2 3 28 28 H 1.09004 * 109.46699 * 270.27468 * 4 3 2 29 29 H 1.09005 * 109.46814 * 30.27304 * 4 3 2 30 30 H 1.08993 * 109.46911 * 150.27308 * 4 3 2 31 31 H 1.07998 * 119.67251 * 0.02562 * 7 6 5 32 32 H 1.07996 * 119.24528 * 179.67205 * 9 8 7 33 33 H 1.07995 * 120.44787 * 180.02562 * 10 9 8 34 34 H 0.97000 * 120.00171 * 180.02562 * 15 14 12 35 35 H 1.07999 * 120.07282 * 180.02562 * 20 5 3 36 36 H 1.07994 * 119.92672 * 179.97438 * 21 20 5 37 37 H 1.09007 * 109.46674 * 59.72990 * 23 22 2 38 38 H 1.09002 * 109.47420 * 299.73461 * 23 22 2 39 39 H 0.96701 * 113.99657 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1956 0.0000 4 6 1.4417 2.5007 0.0006 5 6 3.5917 1.1936 -0.0062 6 6 4.3361 2.4711 -0.0119 7 6 5.1320 2.8275 -1.0981 8 7 5.7890 3.9687 -1.1033 9 6 5.7423 4.8199 -0.0928 10 6 4.9970 4.5639 1.0216 11 6 4.2610 3.3621 1.0940 12 6 3.4770 3.0553 2.2243 13 1 2.6049 2.4266 2.1220 14 6 3.8293 3.5662 3.4813 15 7 2.9426 3.6114 4.4401 16 14 5.5663 4.1822 3.7856 17 1 5.6134 5.6522 3.5795 18 1 5.9670 3.8648 5.1799 19 1 6.4995 3.5196 2.8393 20 6 4.2821 -0.0208 -0.0066 21 6 3.5816 -1.2085 -0.0004 22 6 2.1974 -1.1993 0.0052 23 6 1.4387 -2.5014 0.0116 24 8 2.3630 -3.5912 0.0098 25 1 -0.3632 0.0045 1.0277 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3633 -0.8923 -0.5098 28 1 1.2555 2.8131 -1.0270 29 1 0.4916 2.3715 0.5190 30 1 2.0332 3.2614 0.5101 31 1 5.2067 2.1638 -1.9468 32 1 6.3066 5.7389 -0.1506 33 1 4.9709 5.2716 1.8370 34 1 3.1862 3.9652 5.3098 35 1 5.3620 -0.0294 -0.0110 36 1 4.1141 -2.1481 -0.0011 37 1 0.8078 -2.5586 -0.8755 38 1 0.8157 -2.5546 0.9045 39 1 1.9436 -4.4625 0.0133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204984080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:10 Heat of formation + Delta-G solvation = -12.556413 kcal Electronic energy + Delta-G solvation = -22043.884935 eV Core-core repulsion = 18915.263496 eV Total energy + Delta-G solvation = -3128.621439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.61258 -38.32747 -36.55920 -34.23423 -33.09512 -32.65253 -31.12624 -29.49872 -27.56202 -26.49237 -25.53363 -24.92034 -22.32111 -21.27019 -20.21007 -19.35326 -17.82467 -17.34468 -16.03663 -15.58630 -15.02865 -14.90580 -14.70120 -14.46187 -14.27680 -13.54628 -13.35453 -13.07409 -12.93704 -12.61317 -12.38650 -12.27306 -12.12781 -11.93606 -11.64030 -11.23127 -11.17568 -10.98935 -10.94607 -10.67499 -10.36654 -10.22151 -10.14984 -9.74994 -9.41645 -8.38549 -8.26848 -7.96067 -7.91748 -7.38517 -7.16416 -4.76880 1.81913 2.03926 2.47194 2.58512 3.01342 3.11398 3.22339 3.83546 4.28516 4.30566 4.47328 5.14587 5.25238 5.36407 5.39979 5.46420 5.53806 5.56880 5.67880 5.76825 5.89425 5.95304 6.04612 6.13362 6.26937 6.32724 6.35318 6.43983 6.53017 6.64204 6.71327 6.88271 6.90888 7.05906 7.08482 7.14766 7.21884 7.43546 7.53890 7.65485 7.73816 7.89767 8.16948 8.40182 8.57375 9.36194 9.82482 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017117 B = 0.006123 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.372484 B = 4571.931215 C = 5090.646438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.068 4.068 4 C -0.124 4.124 5 C 0.024 3.976 6 C -0.214 4.214 7 C 0.134 3.866 8 N -0.580 5.580 9 C 0.114 3.886 10 C -0.286 4.286 11 C 0.121 3.879 12 C -0.427 4.427 13 H 0.108 0.892 14 C 0.088 3.912 15 N -0.785 5.785 16 Si 0.911 3.089 17 H -0.267 1.267 18 H -0.288 1.288 19 H -0.245 1.245 20 C -0.123 4.123 21 C -0.100 4.100 22 C -0.115 4.115 23 C 0.126 3.874 24 O -0.569 6.569 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.290 0.710 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.207 -7.585 -4.225 9.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.068 4.068 4 C -0.180 4.180 5 C 0.023 3.977 6 C -0.220 4.220 7 C -0.020 4.020 8 N -0.294 5.294 9 C -0.036 4.036 10 C -0.309 4.309 11 C 0.113 3.887 12 C -0.456 4.456 13 H 0.126 0.874 14 C -0.135 4.135 15 N -0.408 5.408 16 Si 0.737 3.263 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.168 1.168 20 C -0.141 4.141 21 C -0.118 4.118 22 C -0.115 4.115 23 C 0.049 3.951 24 O -0.374 6.374 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.389 -6.814 -4.695 8.942 hybrid contribution -0.268 -0.356 1.238 1.316 sum -3.657 -7.170 -3.457 8.760 Atomic orbital electron populations 1.20793 0.92074 1.02090 1.02022 1.19265 0.95177 0.91898 1.02356 1.19775 0.93020 0.94234 0.99748 1.21062 0.99958 0.95864 1.01165 1.18497 0.91644 0.92238 0.95306 1.19449 1.07337 0.95792 0.99373 1.22168 0.91695 0.92847 0.95325 1.67403 1.26991 1.05454 1.29597 1.21644 0.95310 0.96844 0.89799 1.21599 1.08640 0.99723 1.00894 1.17772 0.89160 0.89279 0.92460 1.19717 1.10214 1.25346 0.90302 0.87424 1.26288 0.99670 0.91716 0.95840 1.69618 1.35379 1.31465 1.04296 0.86308 0.82656 0.79817 0.77480 1.19276 1.21538 1.16811 1.21243 0.99428 0.91628 1.01843 1.20688 0.93343 0.97716 1.00091 1.19325 0.94159 0.92449 1.05594 1.20829 0.90169 0.84777 0.99361 1.86490 1.36476 1.16673 1.97743 0.91399 0.91369 0.92377 0.92672 0.92431 0.88345 0.85686 0.86018 0.87482 0.89975 0.86629 0.85992 0.93001 0.92905 0.77793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 8.77 36.01 0.32 -1.23 16 2 C -0.09 -1.51 5.87 -104.67 -0.61 -2.12 16 3 C -0.07 -1.34 4.98 -104.20 -0.52 -1.86 16 4 C -0.12 -2.37 7.93 36.01 0.29 -2.09 16 5 C 0.02 0.51 4.75 -104.89 -0.50 0.01 16 6 C -0.21 -4.89 4.67 -104.04 -0.49 -5.37 16 7 C 0.13 2.97 10.92 -17.22 -0.19 2.78 16 8 N -0.58 -13.24 10.32 -13.37 -0.14 -13.38 16 9 C 0.11 2.54 11.09 -18.02 -0.20 2.34 16 10 C -0.29 -6.70 7.25 -39.12 -0.28 -6.98 16 11 C 0.12 2.95 4.12 -106.26 -0.44 2.51 16 12 C -0.43 -10.80 7.77 -37.83 -0.29 -11.10 16 13 H 0.11 2.84 5.46 -52.49 -0.29 2.55 16 14 C 0.09 2.17 5.42 -17.31 -0.09 2.08 16 15 N -0.79 -19.64 13.92 55.56 0.77 -18.86 16 16 Si 0.91 20.04 24.53 -169.99 -4.17 15.87 16 17 H -0.27 -5.63 6.69 56.52 0.38 -5.26 16 18 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.24 -5.66 6.87 56.52 0.39 -5.28 16 20 C -0.12 -2.42 9.75 -39.17 -0.38 -2.80 16 21 C -0.10 -1.81 9.36 -39.64 -0.37 -2.18 16 22 C -0.12 -1.94 5.89 -104.50 -0.62 -2.56 16 23 C 0.13 1.62 6.15 36.01 0.22 1.84 16 24 O -0.57 -7.02 12.12 -35.23 -0.43 -7.45 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.89 6.71 -51.93 -0.35 0.54 16 27 H 0.06 0.65 6.61 -51.93 -0.34 0.31 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.00 6.72 -51.93 -0.35 0.65 16 30 H 0.10 2.16 4.29 -51.93 -0.22 1.94 16 31 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 32 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.11 2.45 4.69 -52.49 -0.25 2.20 16 34 H 0.29 6.55 8.29 -40.82 -0.34 6.21 16 35 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.12 2.06 6.99 -52.49 -0.37 1.69 16 37 H 0.05 0.57 7.47 -51.93 -0.39 0.18 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.38 2.58 9.12 45.56 0.42 3.00 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -28.65 311.21 -7.28 -35.93 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -3.84 Total: 9.93 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -4.16 Total: -26.73 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.64 Total: -32.24 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.43 Total: -7.45 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.17 Total: 15.87 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.65 -7.28 -35.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204984080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.374 kcal (2) G-P(sol) polarization free energy of solvation -28.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds