Wall clock time and date at job start Tue Mar 31 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38039 * 119.94286 * 2 1 4 4 C 1.50695 * 120.06057 * 0.02562 * 3 2 1 5 5 C 1.39325 * 119.87453 * 180.31189 * 3 2 1 6 6 C 1.48389 * 120.12262 * 179.72352 * 5 3 2 7 7 C 1.40042 * 120.81631 * 309.70345 * 6 5 3 8 8 C 1.38509 * 119.41823 * 179.72913 * 7 6 5 9 9 N 1.31481 * 121.14590 * 0.55215 * 8 7 6 10 10 C 1.33647 * 121.79314 * 359.71937 * 9 8 7 11 11 C 1.41424 * 119.77911 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00308 * 173.66347 * 11 10 9 13 13 C 1.40035 * 119.99906 * 353.66028 * 11 10 9 14 14 N 1.30738 * 119.99921 * 6.28247 * 13 11 10 15 15 Si 1.86804 * 120.00159 * 186.28090 * 13 11 10 16 16 H 1.48496 * 109.47049 * 94.98416 * 15 13 11 17 17 H 1.48499 * 109.47006 * 214.98553 * 15 13 11 18 18 H 1.48499 * 109.46488 * 334.98591 * 15 13 11 19 19 C 1.39304 * 120.82375 * 129.97726 * 6 5 3 20 20 C 1.39367 * 119.76057 * 359.70326 * 5 3 2 21 21 C 1.38004 * 119.87255 * 359.97438 * 20 5 3 22 22 C 1.38304 * 119.93507 * 179.73984 * 2 1 3 23 23 C 1.50705 * 119.87737 * 359.97438 * 22 2 1 24 24 O 1.42902 * 109.46768 * 179.72686 * 23 22 2 25 25 H 1.09003 * 109.47679 * 270.26073 * 1 2 3 26 26 H 1.09004 * 109.46847 * 30.25738 * 1 2 3 27 27 H 1.08994 * 109.47247 * 150.25431 * 1 2 3 28 28 H 1.09004 * 109.46823 * 270.29489 * 4 3 2 29 29 H 1.08989 * 109.47366 * 30.29777 * 4 3 2 30 30 H 1.09001 * 109.46810 * 150.29807 * 4 3 2 31 31 H 1.07996 * 120.29071 * 359.97096 * 7 6 5 32 32 H 1.08002 * 119.42621 * 180.25220 * 8 7 6 33 33 H 0.96998 * 119.99935 * 179.97438 * 14 13 11 34 34 H 1.07997 * 120.57516 * 359.97438 * 19 6 5 35 35 H 1.07991 * 120.06264 * 179.97438 * 20 5 3 36 36 H 1.08001 * 119.93601 * 180.02562 * 21 20 5 37 37 H 1.09000 * 109.46803 * 59.72844 * 23 22 2 38 38 H 1.09003 * 109.47065 * 299.72548 * 23 22 2 39 39 H 0.96702 * 113.99343 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1961 0.0000 4 6 1.4426 2.5012 0.0006 5 6 3.5892 1.1945 -0.0066 6 6 4.3354 2.4771 -0.0128 7 6 4.0277 3.4816 -0.9388 8 6 4.7390 4.6699 -0.9150 9 7 5.7051 4.8668 -0.0452 10 6 6.0417 3.9386 0.8555 11 6 7.0878 4.1958 1.7719 12 1 7.2954 3.4934 2.5654 13 6 7.8545 5.3613 1.6501 14 7 7.5274 6.2697 0.7686 15 14 9.3444 5.6180 2.7472 16 1 10.5666 5.1637 2.0365 17 1 9.4720 7.0598 3.0793 18 1 9.1790 4.8346 3.9978 19 6 5.3630 2.7095 0.8986 20 6 4.2796 -0.0162 -0.0069 21 6 3.5805 -1.2061 -0.0001 22 6 2.1971 -1.1985 0.0054 23 6 1.4393 -2.5012 0.0119 24 8 2.3644 -3.5903 0.0103 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8922 -0.5098 28 1 1.2560 2.8135 -1.0270 29 1 0.4928 2.3722 0.5193 30 1 2.0342 3.2620 0.5097 31 1 3.2401 3.3326 -1.6625 32 1 4.4991 5.4462 -1.6264 33 1 8.0583 7.0772 0.6845 34 1 5.6327 1.9580 1.6257 35 1 5.3594 -0.0232 -0.0124 36 1 4.1145 -2.1448 0.0001 37 1 0.8085 -2.5589 -0.8751 38 1 0.8165 -2.5547 0.9049 39 1 1.9457 -4.4620 0.0147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204984401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:07 Heat of formation + Delta-G solvation = -7.459166 kcal Electronic energy + Delta-G solvation = -21199.475300 eV Core-core repulsion = 18071.074894 eV Total energy + Delta-G solvation = -3128.400406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.76837 -38.02791 -36.74101 -33.90519 -33.19976 -32.79154 -30.07965 -29.74430 -27.82298 -26.23299 -25.64866 -25.32558 -22.04933 -21.21732 -20.43239 -19.69486 -17.55861 -17.24191 -15.79818 -15.52384 -15.20363 -14.98914 -14.67698 -14.28890 -14.05060 -13.65040 -13.57249 -13.08958 -12.67055 -12.65678 -12.49737 -12.31876 -12.15914 -11.89830 -11.51134 -11.46869 -11.21842 -11.15118 -10.80138 -10.63884 -10.47546 -10.41843 -10.30652 -9.87806 -9.35179 -8.59196 -8.22337 -7.65816 -7.57768 -7.55346 -6.40789 -4.51933 1.50714 1.72346 2.75848 2.96374 3.09375 3.13013 3.19520 3.95133 4.06930 4.09436 4.74576 4.90305 5.05628 5.14775 5.20993 5.30306 5.37963 5.44219 5.60503 5.62404 5.84198 5.89679 5.96976 6.01237 6.04920 6.09531 6.26334 6.37032 6.50998 6.58389 6.71651 6.78956 6.81339 6.88867 7.04359 7.16670 7.30065 7.35464 7.48592 7.56419 7.72491 8.01050 8.23369 8.65772 8.91918 10.11493 10.32097 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.025909 B = 0.003904 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.447884 B = 7169.788890 C = 7905.819707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.075 4.075 4 C -0.111 4.111 5 C -0.015 4.015 6 C 0.001 3.999 7 C -0.299 4.299 8 C 0.122 3.878 9 N -0.484 5.484 10 C 0.256 3.744 11 C -0.434 4.434 12 H 0.083 0.917 13 C 0.070 3.930 14 N -0.717 5.717 15 Si 0.906 3.094 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.252 4.252 20 C -0.114 4.114 21 C -0.100 4.100 22 C -0.108 4.108 23 C 0.124 3.876 24 O -0.569 6.569 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.272 0.728 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.238 -11.836 -1.311 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.075 4.075 4 C -0.167 4.167 5 C -0.015 4.015 6 C -0.005 4.005 7 C -0.322 4.322 8 C -0.043 4.043 9 N -0.197 5.197 10 C 0.131 3.869 11 C -0.465 4.465 12 H 0.101 0.899 13 C -0.155 4.155 14 N -0.338 5.338 15 Si 0.730 3.270 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.185 1.185 19 C -0.275 4.275 20 C -0.132 4.132 21 C -0.118 4.118 22 C -0.109 4.109 23 C 0.047 3.953 24 O -0.374 6.374 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.267 -10.331 -1.367 14.629 hybrid contribution -0.160 -1.167 0.388 1.240 sum -10.427 -11.498 -0.979 15.552 Atomic orbital electron populations 1.20803 0.91710 1.02502 1.02028 1.19283 0.95370 0.91760 1.02421 1.19708 0.92797 0.94546 1.00450 1.20859 0.99087 0.94724 1.02074 1.18995 0.92136 0.93228 0.97178 1.18545 0.94669 0.91364 0.95947 1.21316 1.07953 0.97288 1.05618 1.22449 0.91995 0.94047 0.95795 1.68713 1.14453 1.31253 1.05248 1.18535 0.91080 0.86765 0.90519 1.19620 1.11429 1.04404 1.11056 0.89860 1.26056 0.98678 0.95368 0.95416 1.70137 1.33016 1.04962 1.25672 0.86333 0.81371 0.78369 0.80878 1.19464 1.20100 1.18505 1.21832 1.01688 1.00137 1.03876 1.21289 1.00054 0.91422 1.00403 1.20800 0.93391 0.97946 0.99614 1.19393 0.94216 0.92690 1.04560 1.20837 0.90169 0.84703 0.99571 1.86490 1.36390 1.16763 1.97737 0.91390 0.91193 0.92058 0.91419 0.92413 0.90347 0.88633 0.86397 0.91648 0.88224 0.85901 0.85505 0.92735 0.92739 0.77524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 8.77 36.00 0.32 -0.91 16 2 C -0.09 -1.30 5.87 -104.67 -0.61 -1.91 16 3 C -0.07 -1.28 5.88 -104.29 -0.61 -1.90 16 4 C -0.11 -1.72 7.66 36.00 0.28 -1.45 16 5 C -0.02 -0.30 5.51 -104.89 -0.58 -0.88 16 6 C 0.00 0.02 4.72 -104.64 -0.49 -0.47 16 7 C -0.30 -6.65 8.05 -38.81 -0.31 -6.97 16 8 C 0.12 2.96 11.17 -17.60 -0.20 2.76 16 9 N -0.48 -13.41 7.88 -11.20 -0.09 -13.50 16 10 C 0.26 7.05 6.55 -85.02 -0.56 6.49 16 11 C -0.43 -11.73 9.14 -37.70 -0.34 -12.07 16 12 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 13 C 0.07 1.80 5.49 -17.34 -0.10 1.70 16 14 N -0.72 -19.23 11.49 55.55 0.64 -18.59 16 15 Si 0.91 18.75 29.56 -169.99 -5.03 13.72 16 16 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 19 C -0.25 -6.29 9.37 -38.34 -0.36 -6.65 16 20 C -0.11 -2.08 9.55 -39.25 -0.37 -2.45 16 21 C -0.10 -1.62 9.36 -39.63 -0.37 -1.99 16 22 C -0.11 -1.59 5.88 -104.56 -0.62 -2.21 16 23 C 0.12 1.34 6.15 36.01 0.22 1.56 16 24 O -0.57 -6.05 12.13 -35.23 -0.43 -6.48 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.71 6.72 -51.93 -0.35 0.36 16 27 H 0.06 0.54 6.62 -51.93 -0.34 0.20 16 28 H 0.07 0.98 7.55 -51.93 -0.39 0.59 16 29 H 0.06 0.74 6.72 -51.94 -0.35 0.40 16 30 H 0.08 1.41 6.47 -51.93 -0.34 1.07 16 31 H 0.10 1.91 6.96 -52.49 -0.37 1.54 16 32 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 33 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 34 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 35 H 0.12 2.22 8.05 -52.49 -0.42 1.80 16 36 H 0.13 1.94 6.99 -52.49 -0.37 1.57 16 37 H 0.05 0.50 7.47 -51.93 -0.39 0.11 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.38 2.00 9.12 45.56 0.42 2.41 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -31.20 322.69 -8.89 -40.09 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.13 Total: 7.23 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -4.71 Total: -27.33 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.55 Total: -32.09 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.43 Total: -6.48 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.20 -8.89 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204984401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.631 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds