Wall clock time and date at job start Tue Mar 31 2020 05:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.42898 * 113.99821 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.46985 * 30.00310 * 12 11 10 14 14 C 1.50693 * 109.47065 * 150.00297 * 12 11 10 15 15 C 1.38238 * 120.00108 * 39.72619 * 14 12 11 16 16 C 1.38236 * 119.99775 * 179.80804 * 15 14 12 17 17 C 1.38229 * 120.00277 * 0.42464 * 16 15 14 18 18 C 1.38241 * 120.00074 * 359.80841 * 17 16 15 19 19 C 1.38228 * 119.99902 * 0.02562 * 18 17 16 20 20 C 1.50699 * 109.47186 * 270.00433 * 12 11 10 21 21 C 1.38223 * 119.62010 * 4.72975 * 20 12 11 22 22 C 1.38634 * 119.16371 * 179.75918 * 21 20 12 23 23 C 1.38672 * 118.41580 * 0.50082 * 22 21 20 24 24 C 1.38183 * 119.16383 * 359.73706 * 23 22 21 25 25 N 1.31862 * 119.61801 * 185.00117 * 20 12 11 26 26 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 29 29 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 30 30 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 31 31 H 1.07995 * 119.99513 * 0.02562 * 15 14 12 32 32 H 1.08003 * 119.99780 * 180.20643 * 16 15 14 33 33 H 1.08002 * 120.00128 * 179.78457 * 17 16 15 34 34 H 1.07997 * 120.00184 * 179.97438 * 18 17 16 35 35 H 1.08001 * 120.00238 * 179.97438 * 19 18 17 36 36 H 1.07999 * 120.42069 * 359.97438 * 21 20 12 37 37 H 1.07997 * 120.79277 * 180.26310 * 22 21 20 38 38 H 1.08004 * 120.41602 * 179.71138 * 23 22 21 39 39 H 1.08003 * 119.61349 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.3709 -6.0557 -0.0005 13 1 3.3048 -5.8264 0.5127 14 6 1.6712 -7.1853 0.7104 15 6 0.3152 -7.3822 0.5280 16 6 -0.3258 -8.4209 1.1771 17 6 0.3874 -9.2572 2.0153 18 6 1.7426 -9.0573 2.2015 19 6 2.3842 -8.0208 1.5499 20 6 2.6652 -6.4621 -1.4214 21 6 2.2149 -5.6748 -2.4644 22 6 2.4953 -6.0549 -3.7678 23 6 3.2125 -7.2237 -3.9745 24 6 3.6255 -7.9624 -2.8822 25 7 3.3448 -7.5676 -1.6556 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6043 -0.8905 30 1 2.8721 -3.6042 0.8895 31 1 -0.2427 -6.7268 -0.1243 32 1 -1.3847 -8.5768 1.0320 33 1 -0.1141 -10.0665 2.5252 34 1 2.2997 -9.7104 2.8568 35 1 3.4429 -7.8644 1.6956 36 1 1.6546 -4.7729 -2.2665 37 1 2.1600 -5.4571 -4.6024 38 1 3.4449 -7.5526 -4.9767 39 1 4.1842 -8.8740 -3.0348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:21 Heat of formation + Delta-G solvation = 7.342258 kcal Electronic energy + Delta-G solvation = -21223.678356 eV Core-core repulsion = 18095.919789 eV Total energy + Delta-G solvation = -3127.758568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.39912 -38.94583 -37.33681 -33.55789 -32.71074 -31.92728 -30.74716 -30.60032 -29.72865 -26.20873 -24.50807 -23.40729 -22.55347 -22.38375 -20.91382 -20.69242 -17.25143 -17.00720 -16.49942 -16.17317 -15.50312 -15.41808 -15.10697 -14.66783 -14.52972 -14.17980 -13.96401 -13.45021 -13.22317 -13.07608 -12.96676 -12.41552 -12.25352 -11.95197 -11.67551 -11.20083 -11.05569 -10.94807 -10.73765 -10.55121 -10.50932 -9.77120 -9.59266 -9.45022 -9.24249 -9.07924 -8.86951 -8.74156 -8.56293 -8.40311 -6.07270 -4.11044 1.15170 1.38213 1.50268 1.58510 3.27535 3.34997 3.38617 3.78882 3.89500 4.01878 4.40149 4.60668 4.80233 4.89140 5.03570 5.07738 5.15436 5.16803 5.27299 5.29244 5.39500 5.48506 5.62067 5.69057 5.77155 5.90317 6.08385 6.16108 6.17355 6.18955 6.25900 6.33627 6.59042 6.65293 6.76642 6.77825 6.79644 7.14209 7.43851 7.71522 7.74209 8.00127 8.08497 8.30289 8.95501 9.53198 11.04258 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.004504 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.560763 B = 6214.764960 C = 7489.161207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.027 3.973 10 C 0.062 3.938 11 O -0.370 6.370 12 C 0.178 3.822 13 H 0.084 0.916 14 C -0.064 4.064 15 C -0.089 4.089 16 C -0.127 4.127 17 C -0.123 4.123 18 C -0.127 4.127 19 C -0.095 4.095 20 C 0.112 3.888 21 C -0.148 4.148 22 C -0.077 4.077 23 C -0.180 4.180 24 C 0.092 3.908 25 N -0.474 5.474 26 H 0.262 0.738 27 H 0.024 0.976 28 H 0.026 0.974 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.149 0.851 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.268 -18.153 -3.033 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.013 4.013 11 O -0.288 6.288 12 C 0.118 3.882 13 H 0.101 0.899 14 C -0.065 4.065 15 C -0.107 4.107 16 C -0.145 4.145 17 C -0.141 4.141 18 C -0.145 4.145 19 C -0.114 4.114 20 C -0.026 4.026 21 C -0.168 4.168 22 C -0.103 4.103 23 C -0.200 4.200 24 C -0.065 4.065 25 N -0.184 5.184 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.167 0.833 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.189 -18.516 -2.317 19.125 hybrid contribution 0.440 1.490 -0.888 1.789 sum 4.629 -17.026 -3.205 17.933 Atomic orbital electron populations 1.69986 1.06054 1.26710 1.50119 1.24978 0.94858 0.99274 0.95054 0.86489 0.80043 0.83512 0.77686 1.19688 1.20905 1.20878 1.21070 0.93050 0.90475 1.51653 0.92491 1.19068 0.94115 0.89245 0.98558 1.23094 0.96682 0.82856 0.98697 1.88028 1.33220 1.13280 1.94287 1.19358 0.93922 0.85920 0.89007 0.89878 1.19458 0.94145 0.95728 0.97165 1.21044 0.94097 0.96660 0.98869 1.21118 0.99793 0.95733 0.97846 1.21102 0.94517 0.99541 0.98911 1.21017 0.94806 0.98261 1.00395 1.20901 0.99627 0.94954 0.95871 1.21719 0.93570 0.90733 0.96578 1.22180 1.00110 1.01883 0.92591 1.21639 0.95620 0.95719 0.97335 1.22108 1.00714 0.96696 1.00457 1.22643 0.97247 0.99049 0.87572 1.67337 1.12394 1.14521 1.24194 0.92869 0.95722 0.95561 0.94327 0.94176 0.85559 0.86260 0.86485 0.86267 0.86119 0.83289 0.84793 0.85146 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 10 C 0.06 1.31 5.02 37.16 0.19 1.49 16 11 O -0.37 -7.17 8.15 -35.23 -0.29 -7.45 16 12 C 0.18 2.95 2.80 -29.04 -0.08 2.87 16 13 H 0.08 1.33 7.65 -51.93 -0.40 0.93 16 14 C -0.06 -1.01 4.75 -104.62 -0.50 -1.51 16 15 C -0.09 -1.37 9.35 -39.58 -0.37 -1.74 16 16 C -0.13 -1.67 10.05 -39.59 -0.40 -2.07 16 17 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 18 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 19 C -0.10 -1.31 9.67 -39.58 -0.38 -1.70 16 20 C 0.11 1.79 6.15 -82.59 -0.51 1.28 16 21 C -0.15 -2.31 8.75 -39.44 -0.35 -2.66 16 22 C -0.08 -0.99 10.18 -39.28 -0.40 -1.39 16 23 C -0.18 -2.02 10.11 -39.44 -0.40 -2.42 16 24 C 0.09 1.13 11.18 -17.55 -0.20 0.94 16 25 N -0.47 -7.13 10.01 -9.47 -0.09 -7.22 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.04 0.78 7.21 -51.93 -0.37 0.41 16 30 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 31 H 0.13 2.02 7.77 -52.49 -0.41 1.61 16 32 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.48 8.04 -52.49 -0.42 1.06 16 36 H 0.15 2.54 6.24 -52.49 -0.33 2.21 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -31.19 336.01 -9.62 -40.81 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.27 Total: 1.65 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -4.75 Total: -23.43 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.64 Total: -32.92 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.29 Total: -7.45 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.19 -9.62 -40.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.154 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds