Wall clock time and date at job start Tue Mar 31 2020 05:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99914 * 2 1 4 4 H 1.48504 * 109.46912 * 269.99774 * 3 2 1 5 5 H 1.48501 * 109.47140 * 29.99138 * 3 2 1 6 6 H 1.48496 * 109.47306 * 149.99428 * 3 2 1 7 7 C 1.37873 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99635 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00137 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47311 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.42899 * 113.99577 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47250 * 29.99075 * 12 11 10 14 14 C 1.50706 * 109.46823 * 269.99553 * 12 11 10 15 15 C 1.38234 * 120.00196 * 145.00426 * 14 12 11 16 16 C 1.38235 * 119.99814 * 179.97438 * 15 14 12 17 17 C 1.38230 * 120.00326 * 359.97438 * 16 15 14 18 18 C 1.38243 * 120.00092 * 359.97438 * 17 16 15 19 19 C 1.38234 * 119.99618 * 359.97438 * 18 17 16 20 20 C 1.50692 * 109.47262 * 149.99558 * 12 11 10 21 21 C 1.38229 * 119.61902 * 244.72534 * 20 12 11 22 22 C 1.38627 * 119.15746 * 179.75147 * 21 20 12 23 23 C 1.38673 * 118.42611 * 0.51144 * 22 21 20 24 24 C 1.38182 * 119.15984 * 359.72769 * 23 22 21 25 25 N 1.31861 * 119.61798 * 64.99455 * 20 12 11 26 26 H 0.97002 * 120.00168 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47291 * 60.00154 * 9 7 2 28 28 H 1.09000 * 109.47070 * 300.00623 * 9 7 2 29 29 H 1.08991 * 109.47273 * 59.99491 * 10 9 7 30 30 H 1.09010 * 109.46391 * 299.99814 * 10 9 7 31 31 H 1.08000 * 119.99516 * 0.24808 * 15 14 12 32 32 H 1.08000 * 119.99297 * 179.97438 * 16 15 14 33 33 H 1.08001 * 120.00350 * 179.97438 * 17 16 15 34 34 H 1.07999 * 120.00235 * 179.97438 * 18 17 16 35 35 H 1.08005 * 119.99804 * 179.97438 * 19 18 17 36 36 H 1.07998 * 120.41889 * 359.97438 * 21 20 12 37 37 H 1.08010 * 120.78896 * 180.25983 * 22 21 20 38 38 H 1.07997 * 120.42054 * 179.71140 * 23 22 21 39 39 H 1.07999 * 119.61554 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4507 -2.6364 0.0021 12 6 6.0319 -3.9419 0.0015 13 1 5.3669 -4.6354 -0.5132 14 6 6.2351 -4.4018 1.4222 15 6 6.0774 -5.7365 1.7459 16 6 6.2644 -6.1584 3.0490 17 6 6.6095 -5.2458 4.0282 18 6 6.7683 -3.9113 3.7043 19 6 6.5824 -3.4895 2.4011 20 6 7.3607 -3.8998 -0.7078 21 6 7.5289 -4.6032 -1.8858 22 6 8.7537 -4.5535 -2.5331 23 6 9.7716 -3.8037 -1.9633 24 6 9.5311 -3.1309 -0.7805 25 7 8.3513 -3.1967 -0.1948 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8912 28 1 3.8752 -0.6802 -0.8888 29 1 3.6586 -3.1501 -0.8891 30 1 3.6579 -3.1505 0.8909 31 1 5.8125 -6.4502 0.9799 32 1 6.1407 -7.2011 3.3018 33 1 6.7552 -5.5754 5.0463 34 1 7.0375 -3.1982 4.4695 35 1 6.7060 -2.4468 2.1481 36 1 6.7152 -5.1811 -2.2985 37 1 8.9128 -5.0896 -3.4572 38 1 10.7401 -3.7464 -2.4378 39 1 10.3185 -2.5444 -0.3305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:23 Heat of formation + Delta-G solvation = 11.777438 kcal Electronic energy + Delta-G solvation = -21229.478629 eV Core-core repulsion = 18101.912385 eV Total energy + Delta-G solvation = -3127.566244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46076 -39.02986 -37.23444 -33.55218 -32.62866 -32.30474 -30.72716 -30.61544 -30.17021 -26.33873 -24.51831 -23.59135 -22.68274 -22.29507 -20.74377 -20.57879 -17.17137 -17.13705 -16.86284 -16.27495 -15.79022 -15.54706 -15.17085 -14.45344 -14.31497 -14.18403 -14.04880 -13.67510 -13.29563 -13.18939 -12.93193 -12.66023 -12.41524 -12.14072 -11.60095 -11.53617 -11.05306 -10.98695 -10.72099 -10.36114 -10.10137 -9.91972 -9.81092 -9.46736 -9.24280 -9.13434 -9.01939 -8.72588 -8.56762 -8.53944 -6.06194 -4.05544 0.96959 1.22288 1.49949 1.61618 3.33666 3.40568 3.48003 3.64145 3.90458 4.13977 4.29268 4.46171 4.73562 4.85809 4.89809 4.97124 5.05915 5.10916 5.13866 5.28493 5.29607 5.40096 5.48333 5.62989 5.65631 5.80067 6.00381 6.05210 6.09191 6.13721 6.18506 6.25272 6.57470 6.59337 6.66697 6.70253 6.79410 7.13011 7.17630 7.39215 7.67317 7.85061 8.02488 8.48580 8.95971 9.55413 11.06673 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.004932 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.533374 B = 5675.897260 C = 6875.296554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.007 4.007 10 C 0.074 3.926 11 O -0.368 6.368 12 C 0.179 3.821 13 H 0.080 0.920 14 C -0.102 4.102 15 C -0.114 4.114 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.128 4.128 19 C -0.065 4.065 20 C 0.144 3.856 21 C -0.161 4.161 22 C -0.077 4.077 23 C -0.177 4.177 24 C 0.098 3.902 25 N -0.454 5.454 26 H 0.264 0.736 27 H 0.025 0.975 28 H 0.019 0.981 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.634 -12.435 0.020 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.044 4.044 10 C -0.002 4.002 11 O -0.287 6.287 12 C 0.120 3.880 13 H 0.098 0.902 14 C -0.103 4.103 15 C -0.132 4.132 16 C -0.148 4.148 17 C -0.139 4.139 18 C -0.146 4.146 19 C -0.083 4.083 20 C 0.006 3.994 21 C -0.181 4.181 22 C -0.103 4.103 23 C -0.197 4.197 24 C -0.059 4.059 25 N -0.163 5.163 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 19.422 -11.685 0.803 22.680 hybrid contribution 0.320 0.177 -0.857 0.932 sum 19.741 -11.508 -0.055 22.851 Atomic orbital electron populations 1.69904 1.06270 1.27041 1.50779 1.24937 0.94722 0.99143 0.94279 0.86774 0.80537 0.83387 0.78675 1.20195 1.21296 1.18703 1.20921 0.88737 0.94748 1.51633 0.90907 1.19520 0.96537 0.90902 0.97483 1.22770 0.77103 1.01062 0.99232 1.88044 1.22184 1.23872 1.94603 1.19551 0.89713 0.87670 0.91057 0.90219 1.20202 1.00637 0.93696 0.95721 1.20956 1.00536 0.95022 0.96664 1.20989 1.01337 0.99324 0.93145 1.21114 1.00126 0.93642 0.98994 1.21182 1.00990 0.95819 0.96607 1.21037 0.95032 1.00404 0.91841 1.20951 0.94108 0.92544 0.91806 1.21955 0.98702 1.01463 0.95992 1.21528 0.92681 0.96889 0.99175 1.22148 1.00346 0.99348 0.97889 1.22802 0.94249 0.96390 0.92472 1.67472 0.99839 1.15940 1.33090 0.92603 0.95671 0.96260 0.93918 0.93713 0.86465 0.86420 0.86521 0.86230 0.85034 0.84677 0.84802 0.84946 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.18 4.41 -27.88 -0.12 -0.30 16 10 C 0.07 1.57 5.68 37.16 0.21 1.78 16 11 O -0.37 -7.26 9.12 -35.23 -0.32 -7.58 16 12 C 0.18 2.85 2.64 -29.04 -0.08 2.77 16 13 H 0.08 1.12 7.42 -51.93 -0.39 0.73 16 14 C -0.10 -1.58 4.80 -104.62 -0.50 -2.08 16 15 C -0.11 -1.52 9.68 -39.58 -0.38 -1.91 16 16 C -0.13 -1.60 10.05 -39.59 -0.40 -2.00 16 17 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 18 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 19 C -0.07 -1.04 9.07 -39.58 -0.36 -1.40 16 20 C 0.14 2.12 5.80 -82.59 -0.48 1.65 16 21 C -0.16 -1.90 9.71 -39.44 -0.38 -2.29 16 22 C -0.08 -0.75 10.18 -39.28 -0.40 -1.15 16 23 C -0.18 -1.71 10.11 -39.44 -0.40 -2.11 16 24 C 0.10 1.16 11.18 -17.55 -0.20 0.96 16 25 N -0.45 -6.87 9.77 -9.47 -0.09 -6.97 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 28 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 29 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.13 2.28 7.63 -52.48 -0.40 1.88 16 36 H 0.14 1.30 7.95 -52.49 -0.42 0.88 16 37 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -33.54 336.32 -9.31 -42.85 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.36 Total: -0.16 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -4.71 Total: -23.61 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.68 Total: -34.16 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.32 Total: -7.58 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.54 -9.31 -42.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.630 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds