Wall clock time and date at job start Tue Mar 31 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00186 * 2 1 4 4 C 1.38835 * 120.01237 * 0.02562 * 3 2 1 5 5 C 1.38188 * 120.10157 * 179.97438 * 4 3 2 6 6 C 1.38136 * 120.13586 * 0.03676 * 5 4 3 7 7 C 1.50700 * 119.98427 * 179.97438 * 6 5 4 8 8 C 1.38994 * 120.02921 * 359.96240 * 6 5 4 9 9 N 1.39584 * 120.04893 * 180.02562 * 8 6 5 10 10 C 1.38816 * 119.99767 * 172.12746 * 9 8 6 11 11 C 1.39600 * 119.84696 * 321.44630 * 10 9 8 12 12 C 1.36317 * 120.15992 * 179.75464 * 11 10 9 13 13 C 1.40897 * 119.83853 * 0.54008 * 12 11 10 14 14 C 1.41100 * 120.15905 * 179.69390 * 13 12 11 15 15 H 1.07995 * 120.00529 * 157.79580 * 14 13 12 16 16 C 1.39852 * 119.99721 * 337.79937 * 14 13 12 17 17 N 1.30916 * 119.99900 * 331.99286 * 16 14 13 18 18 Si 1.86800 * 120.00033 * 151.98543 * 16 14 13 19 19 H 1.48502 * 109.46548 * 94.99334 * 18 16 14 20 20 H 1.48502 * 109.47136 * 214.98875 * 18 16 14 21 21 H 1.48496 * 109.47282 * 334.99174 * 18 16 14 22 22 C 1.40907 * 119.69391 * 359.71340 * 13 12 11 23 23 C 1.36311 * 119.83680 * 0.02562 * 22 13 12 24 24 C 1.38555 * 120.01688 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47027 * 60.00170 * 1 2 3 26 26 H 1.09001 * 109.46805 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46982 * 299.99805 * 1 2 3 28 28 H 1.08005 * 119.94942 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.93150 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47128 * 90.00798 * 7 6 5 31 31 H 1.08999 * 109.47131 * 210.00331 * 7 6 5 32 32 H 1.08994 * 109.47252 * 329.99901 * 7 6 5 33 33 H 0.96998 * 120.00315 * 352.13070 * 9 8 6 34 34 H 1.08000 * 119.92282 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.08029 * 180.27510 * 12 11 10 36 36 H 0.96998 * 120.00080 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.08002 * 179.97438 * 22 13 12 38 38 H 1.08003 * 119.91958 * 180.02562 * 23 22 13 39 39 H 1.07994 * 120.06766 * 359.74581 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2901 2.3754 0.0005 5 6 1.9156 3.6076 0.0011 6 6 3.2948 3.6853 0.0003 7 6 3.9734 5.0309 0.0003 8 6 4.0569 2.5229 -0.0002 9 7 5.4506 2.6009 -0.0004 10 6 6.2101 1.4507 0.1637 11 6 5.7921 0.4638 1.0583 12 6 6.5304 -0.6705 1.2208 13 6 7.7240 -0.8405 0.4916 14 6 8.4968 -2.0091 0.6594 15 1 9.1843 -2.3175 -0.1142 16 6 8.3724 -2.7680 1.8275 17 7 8.0152 -2.1918 2.9475 18 14 8.7155 -4.6038 1.7896 19 1 10.1208 -4.8531 2.2000 20 1 7.7958 -5.2987 2.7258 21 1 8.5029 -5.1188 0.4132 22 6 8.1427 0.1621 -0.4056 23 6 7.3917 1.2888 -0.5620 24 6 3.4296 1.2837 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2116 2.3182 0.0005 29 1 1.3249 4.5118 0.0019 30 1 4.1377 5.3550 1.0280 31 1 4.9313 4.9547 -0.5141 32 1 3.3421 5.7562 -0.5129 33 1 5.8884 3.4589 -0.1153 34 1 4.8796 0.5978 1.6203 35 1 6.2034 -1.4351 1.9099 36 1 7.9285 -2.7182 3.7576 37 1 9.0568 0.0384 -0.9673 38 1 7.7111 2.0579 -1.2497 39 1 4.0191 0.3789 0.0051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209840584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:58 Heat of formation + Delta-G solvation = 10.056917 kcal Electronic energy + Delta-G solvation = -21297.170126 eV Core-core repulsion = 18169.529274 eV Total energy + Delta-G solvation = -3127.640851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.03942 -38.48685 -37.20339 -34.83185 -33.15202 -31.87848 -29.98700 -29.50266 -28.52676 -27.26647 -25.67647 -24.78994 -22.08964 -21.48964 -20.54155 -20.07285 -17.91705 -17.41792 -16.77681 -15.54435 -15.46978 -15.31333 -15.19410 -14.72480 -14.03099 -13.79229 -13.48427 -13.34311 -13.14278 -12.65699 -12.39448 -12.19289 -11.95929 -11.94934 -11.73287 -11.50926 -11.27256 -11.15347 -11.10557 -10.88643 -10.58498 -10.46009 -9.85987 -9.84753 -9.42568 -9.05204 -7.97866 -7.68099 -7.59168 -6.95813 -6.53399 -4.27119 1.81365 1.87473 2.74958 3.00733 3.05673 3.08515 3.20173 3.47974 3.89330 4.16302 4.20460 4.51809 5.03334 5.19660 5.23120 5.31834 5.36245 5.50886 5.56501 5.63380 5.70510 5.79464 6.09123 6.10963 6.14262 6.25756 6.25945 6.64538 6.74396 6.85379 6.86217 6.89152 6.99973 7.10130 7.17767 7.44725 7.53536 7.73871 7.77280 7.98283 8.13068 8.29767 8.44327 8.57983 8.82419 8.94684 10.05732 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018304 B = 0.004541 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.332303 B = 6164.414787 C = 7322.134320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.161 3.839 4 C -0.274 4.274 5 C -0.041 4.041 6 C -0.209 4.209 7 C -0.095 4.095 8 C 0.257 3.743 9 N -0.658 5.658 10 C -0.001 4.001 11 C -0.108 4.108 12 C -0.159 4.159 13 C 0.106 3.894 14 C -0.462 4.462 15 H 0.080 0.920 16 C 0.083 3.917 17 N -0.775 5.775 18 Si 0.899 3.101 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.216 4.216 23 C -0.102 4.102 24 C -0.225 4.225 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.396 0.604 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.723 7.078 -3.155 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.230 6.230 3 C 0.115 3.885 4 C -0.295 4.295 5 C -0.060 4.060 6 C -0.214 4.214 7 C -0.152 4.152 8 C 0.150 3.850 9 N -0.277 5.277 10 C -0.095 4.095 11 C -0.128 4.128 12 C -0.179 4.179 13 C 0.104 3.896 14 C -0.490 4.490 15 H 0.099 0.901 16 C -0.138 4.138 17 N -0.399 5.399 18 Si 0.723 3.277 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.236 4.236 23 C -0.123 4.123 24 C -0.248 4.248 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.232 0.768 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.563 6.702 -2.868 12.834 hybrid contribution 0.042 -0.351 0.118 0.372 sum -10.520 6.351 -2.751 12.593 Atomic orbital electron populations 1.22961 0.79139 1.03311 1.01003 1.86086 1.20737 1.27507 1.88709 1.18694 0.91706 0.83634 0.94428 1.20818 0.99065 0.92305 1.17269 1.20373 0.92982 0.96475 0.96197 1.19201 0.93511 0.93659 1.14979 1.20469 0.99651 0.93715 1.01409 1.17335 0.83802 0.92257 0.91576 1.41748 1.01605 1.08601 1.75713 1.17069 0.96747 0.90962 1.04681 1.20440 0.99722 0.95410 0.97274 1.20774 0.95439 0.97823 1.03819 1.17590 0.90864 0.91214 0.89981 1.19497 1.20996 1.06435 1.02070 0.90147 1.25931 0.92556 1.00746 0.94522 1.69928 1.32406 1.37916 0.99631 0.86444 0.78976 0.82520 0.79748 1.19515 1.19878 1.18166 1.20497 1.00914 0.95173 1.06982 1.20092 0.95852 0.97857 0.98454 1.20332 0.91551 0.98405 1.14478 0.92994 0.88741 0.92970 0.86519 0.86578 0.92169 0.92655 0.92144 0.76800 0.88356 0.87020 0.90616 0.88682 0.89270 0.83436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.22 10.49 -19.43 -0.20 -5.42 16 3 C 0.16 2.79 6.68 -39.24 -0.26 2.53 16 4 C -0.27 -4.02 9.04 -39.38 -0.36 -4.38 16 5 C -0.04 -0.58 9.69 -39.64 -0.38 -0.97 16 6 C -0.21 -3.20 5.90 -104.38 -0.62 -3.81 16 7 C -0.10 -1.15 9.63 36.01 0.35 -0.81 16 8 C 0.26 4.65 6.40 -83.81 -0.54 4.12 16 9 N -0.66 -12.20 5.35 -8.32 -0.04 -12.25 16 10 C 0.00 -0.02 5.98 -83.68 -0.50 -0.52 16 11 C -0.11 -2.56 7.24 -39.77 -0.29 -2.85 16 12 C -0.16 -4.09 8.70 -39.27 -0.34 -4.44 16 13 C 0.11 2.79 5.58 -106.80 -0.60 2.20 16 14 C -0.46 -12.05 8.97 -37.89 -0.34 -12.39 16 15 H 0.08 2.02 7.98 -52.49 -0.42 1.60 16 16 C 0.08 2.05 4.90 -17.34 -0.08 1.97 16 17 N -0.78 -19.76 11.47 55.54 0.64 -19.12 16 18 Si 0.90 18.27 29.64 -169.99 -5.04 13.24 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.22 -5.20 9.74 -39.27 -0.38 -5.58 16 23 C -0.10 -2.26 9.90 -39.77 -0.39 -2.65 16 24 C -0.22 -4.36 7.85 -39.22 -0.31 -4.67 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.12 1.40 6.29 -52.48 -0.33 1.07 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.64 6.45 -51.93 -0.33 0.31 16 32 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.40 6.35 6.78 -40.82 -0.28 6.07 16 34 H 0.10 2.25 6.32 -52.49 -0.33 1.92 16 35 H 0.11 2.97 6.37 -52.49 -0.33 2.64 16 36 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 37 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 39 H 0.15 3.20 5.16 -52.49 -0.27 2.93 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -28.17 321.77 -8.61 -36.78 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -4.76 Total: 12.84 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -4.05 Total: -30.92 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.59 Total: -31.37 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.20 Total: -5.42 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.04 Total: 13.24 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.17 -8.61 -36.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209840584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.834 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds