Wall clock time and date at job start Tue Mar 31 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00186 * 2 1 4 4 C 1.38835 * 120.01237 * 0.02562 * 3 2 1 5 5 C 1.38188 * 120.10157 * 179.97438 * 4 3 2 6 6 C 1.38136 * 120.13586 * 0.03676 * 5 4 3 7 7 C 1.50700 * 119.98427 * 179.97438 * 6 5 4 8 8 C 1.38994 * 120.02921 * 359.96240 * 6 5 4 9 9 N 1.39584 * 120.04893 * 180.02562 * 8 6 5 10 10 C 1.38816 * 119.99767 * 172.12746 * 9 8 6 11 11 C 1.39600 * 119.84696 * 321.44630 * 10 9 8 12 12 C 1.36317 * 120.15992 * 179.75464 * 11 10 9 13 13 C 1.40897 * 119.83853 * 0.54008 * 12 11 10 14 14 C 1.41100 * 120.15905 * 179.69390 * 13 12 11 15 15 H 1.07995 * 120.00529 * 157.79580 * 14 13 12 16 16 C 1.39852 * 119.99721 * 337.79937 * 14 13 12 17 17 N 1.30916 * 119.99900 * 331.99286 * 16 14 13 18 18 Si 1.86800 * 120.00033 * 151.98543 * 16 14 13 19 19 H 1.48502 * 109.46548 * 94.99334 * 18 16 14 20 20 H 1.48502 * 109.47136 * 214.98875 * 18 16 14 21 21 H 1.48496 * 109.47282 * 334.99174 * 18 16 14 22 22 C 1.40907 * 119.69391 * 359.71340 * 13 12 11 23 23 C 1.36311 * 119.83680 * 0.02562 * 22 13 12 24 24 C 1.38555 * 120.01688 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47027 * 60.00170 * 1 2 3 26 26 H 1.09001 * 109.46805 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46982 * 299.99805 * 1 2 3 28 28 H 1.08005 * 119.94942 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.93150 * 180.02562 * 5 4 3 30 30 H 1.09002 * 109.47128 * 90.00798 * 7 6 5 31 31 H 1.08999 * 109.47131 * 210.00331 * 7 6 5 32 32 H 1.08994 * 109.47252 * 329.99901 * 7 6 5 33 33 H 0.96998 * 120.00315 * 352.13070 * 9 8 6 34 34 H 1.08000 * 119.92282 * 359.97438 * 11 10 9 35 35 H 1.07997 * 120.08029 * 180.27510 * 12 11 10 36 36 H 0.96998 * 120.00080 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.08002 * 179.97438 * 22 13 12 38 38 H 1.08003 * 119.91958 * 180.02562 * 23 22 13 39 39 H 1.07994 * 120.06766 * 359.74581 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2901 2.3754 0.0005 5 6 1.9156 3.6076 0.0011 6 6 3.2948 3.6853 0.0003 7 6 3.9734 5.0309 0.0003 8 6 4.0569 2.5229 -0.0002 9 7 5.4506 2.6009 -0.0004 10 6 6.2101 1.4507 0.1637 11 6 5.7921 0.4638 1.0583 12 6 6.5304 -0.6705 1.2208 13 6 7.7240 -0.8405 0.4916 14 6 8.4968 -2.0091 0.6594 15 1 9.1843 -2.3175 -0.1142 16 6 8.3724 -2.7680 1.8275 17 7 8.0152 -2.1918 2.9475 18 14 8.7155 -4.6038 1.7896 19 1 10.1208 -4.8531 2.2000 20 1 7.7958 -5.2987 2.7258 21 1 8.5029 -5.1188 0.4132 22 6 8.1427 0.1621 -0.4056 23 6 7.3917 1.2888 -0.5620 24 6 3.4296 1.2837 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2116 2.3182 0.0005 29 1 1.3249 4.5118 0.0019 30 1 4.1377 5.3550 1.0280 31 1 4.9313 4.9547 -0.5141 32 1 3.3421 5.7562 -0.5129 33 1 5.8884 3.4589 -0.1153 34 1 4.8796 0.5978 1.6203 35 1 6.2034 -1.4351 1.9099 36 1 7.9285 -2.7182 3.7576 37 1 9.0568 0.0384 -0.9673 38 1 7.7111 2.0579 -1.2497 39 1 4.0191 0.3789 0.0051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209840584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:57 Heat of formation + Delta-G solvation = -4.497404 kcal Electronic energy + Delta-G solvation = -21297.801248 eV Core-core repulsion = 18169.529274 eV Total energy + Delta-G solvation = -3128.271974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34758 -39.98051 -38.68941 -36.42538 -34.86466 -33.08248 -31.62584 -31.24904 -30.00139 -28.39484 -26.78859 -26.50596 -23.61584 -23.12826 -22.11817 -21.53404 -19.32716 -19.17054 -18.27764 -17.12487 -16.76601 -16.59711 -16.57702 -16.03406 -15.67628 -15.33869 -14.81152 -14.67215 -14.41021 -14.30269 -13.90679 -13.74351 -13.31956 -13.25208 -13.09187 -12.93070 -12.75930 -12.68456 -12.42474 -12.30867 -12.00881 -11.83243 -11.57595 -11.39000 -11.10937 -10.87361 -9.56585 -9.47484 -9.03862 -8.77325 -8.11149 -6.19622 0.51262 0.57493 1.03810 1.10364 1.37203 1.47808 1.56150 2.19032 2.34471 2.62925 2.79958 2.95014 3.69690 3.97285 4.20124 4.24004 4.33637 4.36361 4.40525 4.42704 4.54334 4.57081 4.72015 4.81051 4.89770 4.92315 5.01742 5.09152 5.16864 5.18443 5.31414 5.40812 5.51823 5.54952 5.64301 5.71633 5.86131 5.95883 6.06376 6.25928 6.50959 6.60781 6.72000 6.90539 6.95626 7.11505 8.24982 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018304 B = 0.004541 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.332303 B = 6164.414787 C = 7322.134320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.348 6.348 3 C 0.147 3.853 4 C -0.263 4.263 5 C -0.037 4.037 6 C -0.204 4.204 7 C -0.096 4.096 8 C 0.233 3.767 9 N -0.659 5.659 10 C 0.020 3.980 11 C -0.112 4.112 12 C -0.181 4.181 13 C 0.075 3.925 14 C -0.501 4.501 15 H 0.079 0.921 16 C 0.044 3.956 17 N -0.812 5.812 18 Si 0.974 3.026 19 H -0.258 1.258 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.226 4.226 23 C -0.105 4.105 24 C -0.258 4.258 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.158 0.842 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.410 0.590 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.290 0.710 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.656 9.100 -3.842 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.262 6.262 3 C 0.101 3.899 4 C -0.283 4.283 5 C -0.056 4.056 6 C -0.209 4.209 7 C -0.152 4.152 8 C 0.129 3.871 9 N -0.281 5.281 10 C -0.075 4.075 11 C -0.132 4.132 12 C -0.201 4.201 13 C 0.072 3.928 14 C -0.529 4.529 15 H 0.098 0.902 16 C -0.174 4.174 17 N -0.436 5.436 18 Si 0.794 3.206 19 H -0.182 1.182 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.246 4.246 23 C -0.126 4.126 24 C -0.281 4.281 25 H 0.087 0.913 26 H 0.131 0.869 27 H 0.085 0.915 28 H 0.167 0.833 29 H 0.176 0.824 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.248 0.752 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.141 0.859 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.530 8.761 -3.563 15.699 hybrid contribution 0.386 -0.800 0.281 0.932 sum -12.145 7.961 -3.282 14.888 Atomic orbital electron populations 1.23314 0.76360 1.05196 1.02442 1.86050 1.23720 1.27720 1.88690 1.18854 0.91284 0.84982 0.94758 1.21217 1.00598 0.91479 1.14995 1.20901 0.92753 0.97751 0.94175 1.19630 0.94193 0.93999 1.13054 1.20557 1.00068 0.92273 1.02349 1.17561 0.83537 0.92985 0.92970 1.41574 1.01861 1.07904 1.76747 1.17131 0.96491 0.91283 1.02624 1.20468 0.99410 0.95579 0.97769 1.20679 0.96337 0.98460 1.04663 1.17901 0.91331 0.92339 0.91206 1.19728 1.22336 1.07840 1.03038 0.90247 1.26758 0.91935 1.05080 0.93593 1.69963 1.33535 1.39773 1.00367 0.85333 0.79336 0.76358 0.79596 1.18248 1.19105 1.18243 1.20728 1.01637 0.95468 1.06769 1.20398 0.95545 0.97990 0.98634 1.20275 0.92853 0.97793 1.17204 0.91298 0.86923 0.91544 0.83318 0.82425 0.91403 0.92413 0.89431 0.75186 0.88543 0.89065 0.89899 0.87681 0.85882 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.35 -11.44 10.49 -92.42 -0.97 -12.41 16 3 C 0.15 5.02 6.68 22.49 0.15 5.17 16 4 C -0.26 -6.88 9.04 22.40 0.20 -6.68 16 5 C -0.04 -0.89 9.69 22.23 0.22 -0.68 16 6 C -0.20 -5.66 5.90 -19.71 -0.12 -5.77 16 7 C -0.10 -1.94 9.63 71.24 0.69 -1.25 16 8 C 0.23 8.32 6.40 38.25 0.24 8.56 16 9 N -0.66 -24.07 5.35 -180.24 -0.96 -25.03 16 10 C 0.02 0.87 5.98 38.70 0.23 1.10 16 11 C -0.11 -5.58 7.24 22.15 0.16 -5.42 16 12 C -0.18 -10.00 8.70 22.47 0.20 -9.80 16 13 C 0.07 4.15 5.58 -21.27 -0.12 4.03 16 14 C -0.50 -27.50 8.97 23.36 0.21 -27.29 16 15 H 0.08 4.18 7.98 -2.91 -0.02 4.16 16 16 C 0.04 2.24 4.90 85.22 0.42 2.66 16 17 N -0.81 -43.37 11.47 21.81 0.25 -43.12 16 18 Si 0.97 38.64 29.64 68.60 2.03 40.67 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 22 C -0.23 -11.22 9.74 22.47 0.22 -11.00 16 23 C -0.11 -4.66 9.90 22.15 0.22 -4.44 16 24 C -0.26 -10.28 7.85 22.50 0.18 -10.10 16 25 H 0.07 1.13 7.66 -2.39 -0.02 1.12 16 26 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 28 H 0.15 2.89 6.29 -2.91 -0.02 2.87 16 29 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.15 6.45 -2.39 -0.02 1.13 16 32 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 33 H 0.41 12.45 6.78 -92.71 -0.63 11.82 16 34 H 0.10 4.73 6.32 -2.91 -0.02 4.72 16 35 H 0.09 5.27 6.37 -2.91 -0.02 5.25 16 36 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 37 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 38 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.11 5.17 5.16 -2.91 -0.02 5.15 16 Total: -1.00 -65.43 321.77 5.00 -60.43 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: 0.45 Total: 38.84 kcal Atomic # 6 Polarization: -63.59 SS G_CDS: 4.21 Total: -59.39 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -0.71 Total: -68.15 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.97 Total: -12.41 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -65.43 5.00 -60.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209840584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.928 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds