Wall clock time and date at job start Tue Mar 31 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35892 * 116.99921 * 2 1 4 4 C 1.38831 * 120.01419 * 0.02562 * 3 2 1 5 5 C 1.38201 * 120.10039 * 179.97438 * 4 3 2 6 6 C 1.38138 * 120.13619 * 359.72558 * 5 4 3 7 7 C 1.50693 * 119.98501 * 180.29754 * 6 5 4 8 8 C 1.38987 * 120.02552 * 0.55374 * 6 5 4 9 9 N 1.39586 * 120.05133 * 179.72463 * 8 6 5 10 10 C 1.38685 * 120.00332 * 185.71293 * 9 8 6 11 11 C 1.38811 * 120.29247 * 256.01199 * 10 9 8 12 12 C 1.38124 * 120.02038 * 179.72173 * 11 10 9 13 13 C 1.38928 * 120.63234 * 0.02562 * 12 11 10 14 14 C 1.36423 * 120.60698 * 0.02562 * 13 12 11 15 15 C 1.40742 * 119.95537 * 359.95857 * 14 13 12 16 16 C 1.41007 * 120.31098 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00217 * 150.49240 * 16 15 14 18 18 C 1.39909 * 120.00290 * 330.49490 * 16 15 14 19 19 N 1.30888 * 120.00347 * 161.89540 * 18 16 15 20 20 Si 1.86802 * 119.99851 * 341.90095 * 18 16 15 21 21 H 1.48501 * 109.47608 * 90.68621 * 20 18 16 22 22 H 1.48500 * 109.47082 * 210.69046 * 20 18 16 23 23 H 1.48506 * 109.47042 * 330.68713 * 20 18 16 24 24 C 1.38551 * 120.01662 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47288 * 300.00244 * 1 2 3 26 26 H 1.09000 * 109.47349 * 60.00213 * 1 2 3 27 27 H 1.09007 * 109.46962 * 180.02562 * 1 2 3 28 28 H 1.07995 * 119.95059 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.92973 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47410 * 270.25289 * 7 6 5 31 31 H 1.09002 * 109.47444 * 30.25281 * 7 6 5 32 32 H 1.08998 * 109.46906 * 150.25705 * 7 6 5 33 33 H 0.97003 * 119.99656 * 5.69900 * 9 8 6 34 34 H 1.07993 * 119.99382 * 359.74511 * 11 10 9 35 35 H 1.07999 * 119.67920 * 179.97438 * 12 11 10 36 36 H 1.07999 * 119.69619 * 179.97438 * 13 12 11 37 37 H 1.08004 * 120.02268 * 179.97438 * 14 13 12 38 38 H 0.96996 * 119.99779 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.06878 * 0.03389 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2900 2.3753 0.0005 5 6 1.9156 3.6077 0.0011 6 6 3.2948 3.6853 0.0068 7 6 3.9733 5.0309 0.0141 8 6 4.0568 2.5230 0.0004 9 7 5.4505 2.6009 0.0004 10 6 6.2096 1.4471 -0.1255 11 6 6.8421 0.9007 0.9827 12 6 7.5920 -0.2519 0.8520 13 6 7.7227 -0.8752 -0.3827 14 6 7.1130 -0.3598 -1.4889 15 6 6.3425 0.8134 -1.3844 16 6 5.7086 1.3523 -2.5228 17 1 4.7893 1.9091 -2.4163 18 6 6.2704 1.1657 -3.7905 19 7 5.5395 1.3393 -4.8623 20 14 8.0637 0.6686 -3.9534 21 1 8.1665 -0.8126 -3.9790 22 1 8.6192 1.2252 -5.2131 23 1 8.8311 1.1981 -2.7975 24 6 3.4295 1.2838 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2116 2.3181 0.0014 29 1 1.3249 4.5118 0.0019 30 1 4.1369 5.3609 -1.0117 31 1 3.3422 5.7532 0.5319 32 1 4.9315 4.9517 0.5275 33 1 5.8881 3.4622 0.0882 34 1 6.7476 1.3766 1.9475 35 1 8.0821 -0.6720 1.7179 36 1 8.3130 -1.7755 -0.4677 37 1 7.2212 -0.8519 -2.4442 38 1 5.9289 1.2095 -5.7411 39 1 4.0191 0.3789 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209841158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:01 Heat of formation + Delta-G solvation = 10.233795 kcal Electronic energy + Delta-G solvation = -22048.187049 eV Core-core repulsion = 18920.553868 eV Total energy + Delta-G solvation = -3127.633181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.77486 -38.44260 -37.14760 -34.19489 -33.65712 -31.58950 -30.43721 -29.75200 -28.06826 -26.93342 -25.45232 -24.94358 -22.19842 -21.37034 -20.57660 -19.88634 -17.85141 -17.42416 -16.75576 -15.68087 -15.32046 -15.03865 -14.90094 -14.53697 -14.20406 -14.04136 -13.42528 -13.23655 -13.03659 -12.88032 -12.56871 -12.12910 -11.99668 -11.86378 -11.61989 -11.53510 -11.02760 -10.99267 -10.85534 -10.73559 -10.42761 -10.26516 -10.03274 -9.71393 -9.45806 -9.02982 -7.75413 -7.68414 -7.55454 -6.99249 -6.63897 -4.49280 2.07461 2.19402 2.50274 2.63228 3.08089 3.17290 3.27519 3.68256 3.93095 4.36374 4.47655 4.50867 5.23120 5.32477 5.37716 5.40750 5.55231 5.57818 5.67976 5.78899 5.93699 5.97864 6.05397 6.06801 6.29864 6.33251 6.35207 6.51105 6.61979 6.81690 6.89756 7.01628 7.08417 7.12306 7.18012 7.27224 7.51895 7.65008 7.82710 7.94890 8.03122 8.27866 8.40142 8.46344 8.75871 8.84979 10.02091 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.006322 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.001601 B = 4427.935226 C = 4579.003407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.319 6.319 3 C 0.160 3.840 4 C -0.274 4.274 5 C -0.043 4.043 6 C -0.207 4.207 7 C -0.094 4.094 8 C 0.274 3.726 9 N -0.660 5.660 10 C 0.013 3.987 11 C -0.073 4.073 12 C -0.246 4.246 13 C -0.073 4.073 14 C -0.235 4.235 15 C 0.094 3.906 16 C -0.425 4.425 17 H 0.097 0.903 18 C 0.082 3.918 19 N -0.798 5.798 20 Si 0.914 3.086 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.247 1.247 24 C -0.204 4.204 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.395 0.605 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.285 0.715 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 2.550 6.957 8.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.232 6.232 3 C 0.115 3.885 4 C -0.295 4.295 5 C -0.062 4.062 6 C -0.212 4.212 7 C -0.151 4.151 8 C 0.168 3.832 9 N -0.281 5.281 10 C -0.080 4.080 11 C -0.093 4.093 12 C -0.265 4.265 13 C -0.092 4.092 14 C -0.255 4.255 15 C 0.089 3.911 16 C -0.453 4.453 17 H 0.115 0.885 18 C -0.138 4.138 19 N -0.422 5.422 20 Si 0.741 3.259 21 H -0.195 1.195 22 H -0.220 1.220 23 H -0.170 1.170 24 C -0.227 4.227 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.542 2.247 6.640 8.352 hybrid contribution 0.579 0.100 -0.388 0.704 sum -3.963 2.346 6.251 7.765 Atomic orbital electron populations 1.22930 0.79390 1.03052 1.00962 1.86061 1.20551 1.27717 1.88875 1.18636 0.91694 0.83500 0.94693 1.20753 0.98868 0.92332 1.17533 1.20335 0.93039 0.96345 0.96486 1.19178 0.93447 0.93731 1.14821 1.20450 0.99426 0.93700 1.01520 1.17329 0.83880 0.91982 0.89985 1.41259 1.01212 1.07569 1.78087 1.17290 1.04874 0.92485 0.93358 1.20870 0.97279 0.95174 0.96011 1.20207 1.09427 1.00243 0.96669 1.20392 0.97629 0.97845 0.93301 1.20805 1.07590 0.99155 0.97918 1.17908 0.90014 0.90547 0.92615 1.19438 1.08615 1.28382 0.88820 0.88515 1.26241 1.00617 0.91603 0.95315 1.69738 1.37745 1.35025 0.99648 0.86325 0.82340 0.79203 0.78030 1.19466 1.21963 1.17045 1.19790 0.91201 0.97636 1.14061 0.93166 0.92949 0.88964 0.86731 0.86789 0.92053 0.92437 0.92731 0.76824 0.88642 0.88760 0.88894 0.87877 0.90406 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.32 -5.86 10.49 -19.40 -0.20 -6.06 16 3 C 0.16 3.14 6.68 -39.25 -0.26 2.88 16 4 C -0.27 -4.67 9.04 -39.38 -0.36 -5.03 16 5 C -0.04 -0.71 9.69 -39.63 -0.38 -1.10 16 6 C -0.21 -3.68 5.90 -104.38 -0.62 -4.30 16 7 C -0.09 -1.36 9.61 36.00 0.35 -1.01 16 8 C 0.27 5.57 5.38 -83.80 -0.45 5.12 16 9 N -0.66 -13.37 4.78 -8.06 -0.04 -13.41 16 10 C 0.01 0.30 4.54 -83.28 -0.38 -0.08 16 11 C -0.07 -1.53 9.96 -39.41 -0.39 -1.92 16 12 C -0.25 -5.02 10.03 -39.37 -0.40 -5.41 16 13 C -0.07 -1.57 9.96 -39.98 -0.40 -1.97 16 14 C -0.24 -5.60 7.23 -39.29 -0.28 -5.88 16 15 C 0.09 2.33 4.71 -106.64 -0.50 1.82 16 16 C -0.42 -11.31 9.06 -37.91 -0.34 -11.65 16 17 H 0.10 2.79 6.73 -52.49 -0.35 2.43 16 18 C 0.08 2.13 5.41 -17.33 -0.09 2.04 16 19 N -0.80 -21.20 13.93 55.55 0.77 -20.43 16 20 Si 0.91 20.66 24.56 -169.99 -4.17 16.49 16 21 H -0.27 -5.91 6.47 56.52 0.37 -5.55 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.25 -5.70 7.04 56.52 0.40 -5.30 16 24 C -0.20 -4.41 9.01 -39.22 -0.35 -4.77 16 25 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 26 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.11 1.63 6.29 -52.49 -0.33 1.30 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.05 0.74 6.47 -51.93 -0.34 0.40 16 33 H 0.39 7.11 6.78 -40.82 -0.28 6.84 16 34 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.10 2.47 4.54 -52.48 -0.24 2.23 16 38 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 39 H 0.13 3.14 6.80 -52.49 -0.36 2.78 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -28.52 318.22 -7.54 -36.06 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -4.82 Total: 12.40 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -3.87 Total: -29.84 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.74 Total: -33.84 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.20 Total: -6.06 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.17 Total: 16.49 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.52 -7.54 -36.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209841158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.294 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds