Wall clock time and date at job start Tue Mar 31 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35892 * 116.99921 * 2 1 4 4 C 1.38831 * 120.01419 * 0.02562 * 3 2 1 5 5 C 1.38201 * 120.10039 * 179.97438 * 4 3 2 6 6 C 1.38138 * 120.13619 * 359.72558 * 5 4 3 7 7 C 1.50693 * 119.98501 * 180.29754 * 6 5 4 8 8 C 1.38987 * 120.02552 * 0.55374 * 6 5 4 9 9 N 1.39586 * 120.05133 * 179.72463 * 8 6 5 10 10 C 1.38685 * 120.00332 * 185.71293 * 9 8 6 11 11 C 1.38811 * 120.29247 * 256.01199 * 10 9 8 12 12 C 1.38124 * 120.02038 * 179.72173 * 11 10 9 13 13 C 1.38928 * 120.63234 * 0.02562 * 12 11 10 14 14 C 1.36423 * 120.60698 * 0.02562 * 13 12 11 15 15 C 1.40742 * 119.95537 * 359.95857 * 14 13 12 16 16 C 1.41007 * 120.31098 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00217 * 150.49240 * 16 15 14 18 18 C 1.39909 * 120.00290 * 330.49490 * 16 15 14 19 19 N 1.30888 * 120.00347 * 161.89540 * 18 16 15 20 20 Si 1.86802 * 119.99851 * 341.90095 * 18 16 15 21 21 H 1.48501 * 109.47608 * 90.68621 * 20 18 16 22 22 H 1.48500 * 109.47082 * 210.69046 * 20 18 16 23 23 H 1.48506 * 109.47042 * 330.68713 * 20 18 16 24 24 C 1.38551 * 120.01662 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47288 * 300.00244 * 1 2 3 26 26 H 1.09000 * 109.47349 * 60.00213 * 1 2 3 27 27 H 1.09007 * 109.46962 * 180.02562 * 1 2 3 28 28 H 1.07995 * 119.95059 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.92973 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47410 * 270.25289 * 7 6 5 31 31 H 1.09002 * 109.47444 * 30.25281 * 7 6 5 32 32 H 1.08998 * 109.46906 * 150.25705 * 7 6 5 33 33 H 0.97003 * 119.99656 * 5.69900 * 9 8 6 34 34 H 1.07993 * 119.99382 * 359.74511 * 11 10 9 35 35 H 1.07999 * 119.67920 * 179.97438 * 12 11 10 36 36 H 1.07999 * 119.69619 * 179.97438 * 13 12 11 37 37 H 1.08004 * 120.02268 * 179.97438 * 14 13 12 38 38 H 0.96996 * 119.99779 * 180.02562 * 19 18 16 39 39 H 1.08001 * 120.06878 * 0.03389 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2900 2.3753 0.0005 5 6 1.9156 3.6077 0.0011 6 6 3.2948 3.6853 0.0068 7 6 3.9733 5.0309 0.0141 8 6 4.0568 2.5230 0.0004 9 7 5.4505 2.6009 0.0004 10 6 6.2096 1.4471 -0.1255 11 6 6.8421 0.9007 0.9827 12 6 7.5920 -0.2519 0.8520 13 6 7.7227 -0.8752 -0.3827 14 6 7.1130 -0.3598 -1.4889 15 6 6.3425 0.8134 -1.3844 16 6 5.7086 1.3523 -2.5228 17 1 4.7893 1.9091 -2.4163 18 6 6.2704 1.1657 -3.7905 19 7 5.5395 1.3393 -4.8623 20 14 8.0637 0.6686 -3.9534 21 1 8.1665 -0.8126 -3.9790 22 1 8.6192 1.2252 -5.2131 23 1 8.8311 1.1981 -2.7975 24 6 3.4295 1.2838 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2116 2.3181 0.0014 29 1 1.3249 4.5118 0.0019 30 1 4.1369 5.3609 -1.0117 31 1 3.3422 5.7532 0.5319 32 1 4.9315 4.9517 0.5275 33 1 5.8881 3.4622 0.0882 34 1 6.7476 1.3766 1.9475 35 1 8.0821 -0.6720 1.7179 36 1 8.3130 -1.7755 -0.4677 37 1 7.2212 -0.8519 -2.4442 38 1 5.9289 1.2095 -5.7411 39 1 4.0191 0.3789 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209841158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:00 Heat of formation + Delta-G solvation = -5.984865 kcal Electronic energy + Delta-G solvation = -22048.890343 eV Core-core repulsion = 18920.553868 eV Total energy + Delta-G solvation = -3128.336475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22237 -40.02712 -38.63660 -35.74703 -35.52265 -32.93197 -32.26005 -31.28477 -29.53532 -28.24983 -26.84490 -26.62026 -23.76894 -23.12682 -21.99486 -21.51217 -19.31487 -19.25359 -18.36497 -17.28934 -16.60648 -16.51606 -16.41301 -16.02788 -15.85658 -15.73889 -15.07157 -14.61227 -14.47366 -14.36057 -14.20639 -13.78033 -13.41500 -13.23051 -13.10548 -12.77109 -12.68184 -12.61925 -12.33096 -12.23124 -12.05442 -11.73960 -11.63041 -11.52443 -11.14194 -10.67398 -9.51539 -9.41680 -9.05124 -8.89533 -8.15243 -6.43977 0.63689 0.64544 0.81452 0.88124 1.24466 1.38070 1.46330 2.09572 2.40290 2.61036 2.90361 3.04615 3.48531 4.00375 4.25727 4.27785 4.31336 4.37360 4.40730 4.43172 4.56904 4.63180 4.70059 4.72083 4.82392 4.90298 4.94347 4.96530 5.09281 5.18045 5.31062 5.42278 5.49415 5.55987 5.71705 5.76266 5.87869 5.90874 6.02018 6.24592 6.36411 6.57996 6.66174 6.78230 6.91088 7.18723 8.17949 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.006322 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.001601 B = 4427.935226 C = 4579.003407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.347 6.347 3 C 0.147 3.853 4 C -0.270 4.270 5 C -0.041 4.041 6 C -0.215 4.215 7 C -0.091 4.091 8 C 0.255 3.745 9 N -0.663 5.663 10 C 0.019 3.981 11 C -0.083 4.083 12 C -0.225 4.225 13 C -0.081 4.081 14 C -0.253 4.253 15 C 0.073 3.927 16 C -0.454 4.454 17 H 0.058 0.942 18 C 0.044 3.956 19 N -0.846 5.846 20 Si 0.968 3.032 21 H -0.260 1.260 22 H -0.280 1.280 23 H -0.254 1.254 24 C -0.238 4.238 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.116 0.884 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.403 0.597 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.292 0.708 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 3.033 9.061 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.261 6.261 3 C 0.101 3.899 4 C -0.290 4.290 5 C -0.059 4.059 6 C -0.219 4.219 7 C -0.148 4.148 8 C 0.150 3.850 9 N -0.287 5.287 10 C -0.075 4.075 11 C -0.103 4.103 12 C -0.245 4.245 13 C -0.099 4.099 14 C -0.273 4.273 15 C 0.069 3.931 16 C -0.483 4.483 17 H 0.076 0.924 18 C -0.170 4.170 19 N -0.472 5.472 20 Si 0.792 3.208 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.178 1.178 24 C -0.262 4.262 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.134 0.866 28 H 0.165 0.835 29 H 0.172 0.828 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.242 0.758 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.536 2.731 8.756 10.232 hybrid contribution 0.463 -0.108 -0.779 0.913 sum -4.073 2.623 7.976 9.332 Atomic orbital electron populations 1.23298 0.76501 1.05198 1.02239 1.86018 1.23631 1.27664 1.88808 1.18818 0.91344 0.84917 0.94823 1.21139 1.00419 0.91545 1.15925 1.20858 0.92839 0.97685 0.94529 1.19633 0.94272 0.94239 1.13779 1.20494 1.00140 0.92466 1.01696 1.17543 0.83933 0.92611 0.90871 1.41210 1.01385 1.07373 1.78752 1.17552 1.04014 0.92784 0.93109 1.21228 0.96907 0.95573 0.96569 1.20734 1.07246 0.99028 0.97477 1.20775 0.97439 0.98885 0.92777 1.20940 1.08362 0.99144 0.98824 1.18130 0.90593 0.91252 0.93100 1.19252 1.08428 1.30300 0.90313 0.92353 1.26875 1.03744 0.91608 0.94786 1.69777 1.39217 1.38014 1.00202 0.85502 0.78114 0.79262 0.77935 1.18583 1.20682 1.17818 1.19728 0.92399 0.96899 1.17147 0.91108 0.92240 0.86616 0.83484 0.82793 0.92612 0.89317 0.92169 0.75804 0.86058 0.85017 0.85626 0.88544 0.89800 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.64 16 2 O -0.35 -12.97 10.49 -92.34 -0.97 -13.94 16 3 C 0.15 5.86 6.68 22.49 0.15 6.01 16 4 C -0.27 -8.79 9.04 22.40 0.20 -8.59 16 5 C -0.04 -1.25 9.69 22.24 0.22 -1.04 16 6 C -0.21 -7.47 5.90 -19.71 -0.12 -7.59 16 7 C -0.09 -2.48 9.61 71.23 0.68 -1.80 16 8 C 0.25 10.66 5.38 38.25 0.21 10.87 16 9 N -0.66 -27.52 4.78 -179.41 -0.86 -28.37 16 10 C 0.02 0.88 4.54 39.02 0.18 1.06 16 11 C -0.08 -3.32 9.96 22.38 0.22 -3.10 16 12 C -0.23 -8.54 10.03 22.41 0.22 -8.31 16 13 C -0.08 -3.29 9.96 22.01 0.22 -3.07 16 14 C -0.25 -12.11 7.23 22.46 0.16 -11.95 16 15 C 0.07 3.76 4.71 -21.17 -0.10 3.66 16 16 C -0.45 -25.65 9.06 23.35 0.21 -25.43 16 17 H 0.06 3.65 6.73 -2.91 -0.02 3.63 16 18 C 0.04 2.42 5.41 85.24 0.46 2.88 16 19 N -0.85 -47.44 13.93 21.82 0.30 -47.13 16 20 Si 0.97 43.66 24.56 68.60 1.68 45.35 16 21 H -0.26 -11.22 6.47 99.48 0.64 -10.57 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.25 -11.60 7.04 99.48 0.70 -10.90 16 24 C -0.24 -10.86 9.01 22.50 0.20 -10.66 16 25 H 0.07 1.40 7.66 -2.39 -0.02 1.38 16 26 H 0.06 1.33 7.66 -2.39 -0.02 1.31 16 27 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.15 3.72 6.29 -2.91 -0.02 3.70 16 29 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.85 8.09 -2.39 -0.02 1.83 16 32 H 0.06 1.55 6.47 -2.39 -0.02 1.53 16 33 H 0.40 14.71 6.78 -92.71 -0.63 14.08 16 34 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 36 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.10 4.67 4.54 -2.91 -0.01 4.66 16 38 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16 39 H 0.09 4.84 6.80 -2.91 -0.02 4.82 16 Total: -1.00 -66.38 318.22 4.78 -61.60 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: 0.38 Total: 37.90 kcal Atomic # 6 Polarization: -59.64 SS G_CDS: 4.24 Total: -55.40 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -0.55 Total: -75.51 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.97 Total: -13.94 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.68 Total: 45.35 kcal Total: -66.38 4.78 -61.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209841158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.614 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds