Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35896 * 117.00162 * 2 1 4 4 C 1.38813 * 120.01723 * 0.02676 * 3 2 1 5 5 C 1.38190 * 120.09554 * 179.72259 * 4 3 2 6 6 C 1.38147 * 120.12672 * 0.50867 * 5 4 3 7 7 C 1.50699 * 119.98158 * 179.77026 * 6 5 4 8 8 C 1.38944 * 120.03614 * 359.48937 * 6 5 4 9 9 N 1.39705 * 120.04838 * 180.27737 * 8 6 5 10 10 C 1.39724 * 120.00100 * 171.77160 * 9 8 6 11 11 C 1.39351 * 119.95172 * 321.96104 * 10 9 8 12 12 C 1.38481 * 120.42168 * 179.75819 * 11 10 9 13 13 C 1.37688 * 120.32232 * 0.52144 * 12 11 10 14 14 C 1.40752 * 119.90241 * 359.74288 * 13 12 11 15 15 C 1.41407 * 120.21203 * 179.97438 * 14 13 12 16 16 H 1.07990 * 120.00223 * 157.92576 * 15 14 13 17 17 C 1.39935 * 119.99785 * 337.92855 * 15 14 13 18 18 N 1.30833 * 119.99654 * 332.65124 * 17 15 14 19 19 Si 1.86797 * 119.99831 * 152.64806 * 17 15 14 20 20 H 1.48500 * 109.46939 * 94.99126 * 19 17 15 21 21 H 1.48498 * 109.46792 * 214.98813 * 19 17 15 22 22 H 1.48492 * 109.47118 * 334.98776 * 19 17 15 23 23 C 1.38295 * 119.95592 * 142.24238 * 10 9 8 24 24 C 1.38575 * 120.01836 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47081 * 59.99594 * 1 2 3 26 26 H 1.08999 * 109.47490 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47232 * 299.99889 * 1 2 3 28 28 H 1.08001 * 119.95489 * 359.97387 * 4 3 2 29 29 H 1.07995 * 119.93236 * 180.24902 * 5 4 3 30 30 H 1.09000 * 109.47143 * 269.72122 * 7 6 5 31 31 H 1.08995 * 109.47426 * 149.72520 * 7 6 5 32 32 H 1.09004 * 109.47337 * 29.71632 * 7 6 5 33 33 H 0.97001 * 120.00442 * 351.77915 * 9 8 6 34 34 H 1.08000 * 119.78911 * 0.02840 * 11 10 9 35 35 H 1.07998 * 119.83286 * 180.23709 * 12 11 10 36 36 H 1.08010 * 120.04767 * 179.76005 * 13 12 11 37 37 H 0.97006 * 119.99279 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.15820 * 359.95632 * 23 10 9 39 39 H 1.07997 * 120.06428 * 0.03951 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2903 2.3753 0.0006 5 6 1.9160 3.6074 0.0064 6 6 3.2953 3.6846 0.0010 7 6 3.9742 5.0300 0.0021 8 6 4.0569 2.5225 0.0005 9 7 5.4518 2.6003 0.0009 10 6 6.2160 1.4434 0.1736 11 6 5.7944 0.4575 1.0635 12 6 6.5416 -0.6952 1.2385 13 6 7.7159 -0.8748 0.5423 14 6 8.1574 0.1148 -0.3560 15 6 9.3627 -0.0625 -1.0739 16 1 9.5297 0.4817 -1.9916 17 6 10.3390 -0.9433 -0.5952 18 7 10.4282 -1.1868 0.6871 19 14 11.5149 -1.7714 -1.7872 20 1 12.7715 -0.9844 -1.8701 21 1 11.8208 -3.1433 -1.3080 22 1 10.8873 -1.8449 -3.1310 23 6 7.3928 1.2811 -0.5345 24 6 3.4297 1.2838 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2118 2.3182 0.0006 29 1 1.3255 4.5116 0.0108 30 1 4.1382 5.3551 -1.0253 31 1 4.9323 4.9531 0.5161 32 1 3.3432 5.7551 0.5162 33 1 5.8898 3.4575 -0.1185 34 1 4.8767 0.5912 1.6170 35 1 6.2040 -1.4549 1.9278 36 1 8.2972 -1.7738 0.6851 37 1 11.1052 -1.7971 1.0189 38 1 7.7226 2.0463 -1.2216 39 1 4.0192 0.3789 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209841277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = 7.799424 kcal Electronic energy + Delta-G solvation = -21192.921585 eV Core-core repulsion = 18065.182841 eV Total energy + Delta-G solvation = -3127.738744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.10361 -38.49351 -37.17395 -34.80640 -33.22111 -31.89666 -30.13386 -29.63531 -28.01630 -26.95721 -25.68909 -25.30942 -22.31749 -21.34803 -20.47676 -20.18742 -18.03745 -17.56710 -16.24358 -15.67911 -15.56793 -15.25714 -14.93435 -14.76369 -14.45056 -13.87855 -13.52573 -13.38280 -13.09592 -12.81467 -12.41777 -12.28233 -12.16257 -11.80049 -11.78528 -11.49226 -11.31335 -11.08469 -10.90677 -10.70687 -10.68386 -10.39257 -10.00351 -9.84728 -9.51038 -9.04612 -8.03414 -7.73230 -7.53287 -6.89418 -6.49357 -4.37946 1.74311 1.79089 2.75917 3.00196 3.05612 3.09145 3.21752 3.40589 3.89093 4.05048 4.12845 4.53883 4.97322 5.14111 5.17611 5.26362 5.30747 5.45975 5.51337 5.61914 5.67241 5.75519 6.03777 6.06344 6.15582 6.25478 6.46158 6.56946 6.71166 6.79556 6.82330 6.90675 6.97736 7.08927 7.19662 7.26212 7.64423 7.72104 7.78607 8.00292 8.03841 8.32781 8.33182 8.60921 8.84703 8.93911 10.07486 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023417 B = 0.003942 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.423737 B = 7102.016282 C = 7817.695547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.317 6.317 3 C 0.158 3.842 4 C -0.267 4.267 5 C -0.044 4.044 6 C -0.201 4.201 7 C -0.100 4.100 8 C 0.254 3.746 9 N -0.675 5.675 10 C 0.174 3.826 11 C -0.269 4.269 12 C -0.082 4.082 13 C -0.184 4.184 14 C 0.131 3.869 15 C -0.467 4.467 16 H 0.079 0.921 17 C 0.085 3.915 18 N -0.777 5.777 19 Si 0.900 3.100 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.255 4.255 24 C -0.218 4.218 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.402 0.598 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.282 0.718 38 H 0.094 0.906 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.199 5.446 -0.706 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.230 6.230 3 C 0.112 3.888 4 C -0.288 4.288 5 C -0.063 4.063 6 C -0.206 4.206 7 C -0.157 4.157 8 C 0.150 3.850 9 N -0.295 5.295 10 C 0.081 3.919 11 C -0.290 4.290 12 C -0.102 4.102 13 C -0.203 4.203 14 C 0.127 3.873 15 C -0.495 4.495 16 H 0.098 0.902 17 C -0.136 4.136 18 N -0.400 5.400 19 Si 0.724 3.276 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.277 4.277 24 C -0.241 4.241 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.238 0.762 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.898 5.005 -0.494 13.844 hybrid contribution 0.488 0.078 -0.435 0.659 sum -12.409 5.083 -0.929 13.442 Atomic orbital electron populations 1.22971 0.79086 1.03358 1.01043 1.86079 1.20763 1.27424 1.88729 1.18690 0.91699 0.83682 0.94724 1.20868 0.99179 0.92319 1.16384 1.20400 0.92955 0.96571 0.96365 1.19242 0.93538 0.93750 1.14031 1.20518 1.00040 0.93629 1.01493 1.17299 0.83500 0.92401 0.91846 1.42334 1.01931 1.09161 1.76041 1.17420 0.91908 0.86671 0.95890 1.20290 1.03872 0.98371 1.06451 1.20494 0.95100 0.96011 0.98547 1.21156 0.96439 1.00323 1.02401 1.17334 0.91373 0.88912 0.89632 1.19521 0.99886 1.21957 1.08168 0.90244 1.25911 0.97775 0.94895 0.94998 1.69902 1.29428 1.26836 1.13842 0.86439 0.80033 0.79107 0.82055 1.19538 1.19899 1.18210 1.20669 0.99563 1.00031 1.07409 1.20461 0.91662 0.98642 1.13338 0.92957 0.88696 0.92950 0.86382 0.86400 0.92090 0.92302 0.91943 0.76157 0.88367 0.89073 0.87201 0.90676 0.88817 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.93 10.49 -19.41 -0.20 -5.14 16 3 C 0.16 2.62 6.68 -39.24 -0.26 2.36 16 4 C -0.27 -3.75 9.04 -39.39 -0.36 -4.11 16 5 C -0.04 -0.60 9.69 -39.63 -0.38 -0.98 16 6 C -0.20 -3.02 5.90 -104.39 -0.62 -3.63 16 7 C -0.10 -1.20 9.51 36.01 0.34 -0.86 16 8 C 0.25 4.54 6.40 -83.78 -0.54 4.00 16 9 N -0.67 -12.68 5.33 -8.47 -0.05 -12.72 16 10 C 0.17 3.91 5.97 -83.83 -0.50 3.41 16 11 C -0.27 -6.11 7.34 -39.08 -0.29 -6.40 16 12 C -0.08 -1.95 10.02 -39.69 -0.40 -2.34 16 13 C -0.18 -4.74 8.75 -38.83 -0.34 -5.08 16 14 C 0.13 3.45 5.57 -106.85 -0.60 2.86 16 15 C -0.47 -12.25 8.99 -37.74 -0.34 -12.59 16 16 H 0.08 2.01 7.98 -52.49 -0.42 1.59 16 17 C 0.08 2.09 4.92 -17.34 -0.09 2.01 16 18 N -0.78 -19.74 11.42 55.55 0.63 -19.11 16 19 Si 0.90 18.27 29.64 -169.99 -5.04 13.24 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 C -0.25 -6.20 9.71 -38.67 -0.38 -6.58 16 24 C -0.22 -4.11 7.84 -39.23 -0.31 -4.42 16 25 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 28 H 0.12 1.34 6.29 -52.49 -0.33 1.01 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.71 6.67 -51.93 -0.35 0.36 16 32 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.40 6.64 6.95 -40.82 -0.28 6.36 16 34 H 0.10 2.13 6.30 -52.49 -0.33 1.80 16 35 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.11 2.90 6.34 -52.48 -0.33 2.57 16 37 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 38 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 39 H 0.15 3.20 5.18 -52.49 -0.27 2.93 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -28.37 322.22 -8.62 -36.99 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -4.78 Total: 12.93 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: -4.05 Total: -31.05 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.59 Total: -31.83 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.20 Total: -5.14 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.04 Total: 13.24 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.37 -8.62 -36.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209841277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.790 kcal (2) G-P(sol) polarization free energy of solvation -28.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds