Wall clock time and date at job start Tue Mar 31 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38326 * 119.91753 * 2 1 4 4 C 1.38066 * 120.07889 * 179.69846 * 3 2 1 5 5 C 1.38994 * 119.91540 * 0.53283 * 4 3 2 6 6 N 1.39596 * 120.07399 * 179.73954 * 5 4 3 7 7 C 1.38679 * 120.00207 * 4.12747 * 6 5 4 8 8 C 1.38809 * 120.30279 * 256.13208 * 7 6 5 9 9 C 1.38120 * 120.02495 * 180.25631 * 8 7 6 10 10 C 1.38927 * 120.63371 * 359.74200 * 9 8 7 11 11 C 1.36431 * 120.60452 * 359.97438 * 10 9 8 12 12 C 1.40743 * 119.95512 * 0.02562 * 11 10 9 13 13 C 1.41011 * 120.30893 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99862 * 154.34128 * 13 12 11 15 15 C 1.39910 * 120.00137 * 334.34916 * 13 12 11 16 16 N 1.30886 * 119.99596 * 329.28046 * 15 13 12 17 17 Si 1.86798 * 120.00059 * 149.28641 * 15 13 12 18 18 H 1.48504 * 109.46908 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.47157 * 299.99485 * 17 15 13 20 20 H 1.48494 * 109.47102 * 59.99787 * 17 15 13 21 21 C 1.38952 * 119.84357 * 359.47444 * 5 4 3 22 22 C 1.38104 * 119.91608 * 0.26926 * 21 5 4 23 23 C 1.50701 * 119.95799 * 180.02562 * 22 21 5 24 24 O 1.42900 * 109.47227 * 359.97438 * 23 22 21 25 25 H 1.08992 * 109.46839 * 270.02021 * 1 2 3 26 26 H 1.09003 * 109.47037 * 30.02516 * 1 2 3 27 27 H 1.09002 * 109.46712 * 150.01824 * 1 2 3 28 28 H 1.07998 * 119.96253 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.03754 * 180.28007 * 4 3 2 30 30 H 0.96999 * 119.99587 * 184.12228 * 6 5 4 31 31 H 1.08007 * 119.98441 * 359.97438 * 8 7 6 32 32 H 1.08000 * 119.67812 * 179.76099 * 9 8 7 33 33 H 1.07994 * 119.69523 * 179.97438 * 10 9 8 34 34 H 1.07997 * 120.01884 * 180.02562 * 11 10 9 35 35 H 0.96996 * 120.00745 * 352.86786 * 16 15 13 36 36 H 1.07994 * 120.03726 * 180.25468 * 21 5 4 37 37 H 1.08991 * 109.47585 * 119.99894 * 23 22 21 38 38 H 1.09000 * 109.47030 * 240.00223 * 23 22 21 39 39 H 0.96700 * 114.00558 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1989 0.0000 4 6 3.5776 1.2028 0.0063 5 6 4.2742 0.0001 0.0014 6 7 5.6702 0.0002 0.0023 7 6 6.3635 1.1977 0.0944 8 6 6.9631 1.7481 -1.0300 9 6 7.6567 2.9384 -0.9306 10 6 7.7582 3.5991 0.2873 11 6 7.1740 3.0842 1.4075 12 6 6.4611 1.8728 1.3349 13 6 5.8548 1.3337 2.4882 14 1 5.0004 0.6798 2.3936 15 6 6.3600 1.6458 3.7551 16 7 7.6367 1.8898 3.9085 17 14 5.2123 1.7142 5.2273 18 1 5.9887 2.0628 6.4443 19 1 4.1683 2.7441 4.9938 20 1 4.5679 0.3895 5.4145 21 6 3.5779 -1.2023 0.0013 22 6 2.1968 -1.1985 0.0004 23 6 1.4406 -2.5020 0.0008 24 8 2.3669 -3.5901 0.0016 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6550 2.1331 0.0004 29 1 4.1156 2.1393 0.0109 30 1 6.1552 -0.8374 -0.0615 31 1 6.8911 1.2431 -1.9820 32 1 8.1243 3.3597 -1.8083 33 1 8.3045 4.5286 0.3478 34 1 7.2585 3.6059 2.3494 35 1 8.2489 1.7540 3.1685 36 1 4.1159 -2.1387 0.0017 37 1 0.8133 -2.5579 0.8903 38 1 0.8145 -2.5591 -0.8896 39 1 1.9493 -4.4623 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210250101.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:01 Heat of formation + Delta-G solvation = -15.981343 kcal Electronic energy + Delta-G solvation = -21725.618322 eV Core-core repulsion = 18596.848367 eV Total energy + Delta-G solvation = -3128.769955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.42241 -38.01425 -36.50165 -34.81986 -33.91316 -31.25582 -30.86667 -29.42261 -28.32738 -26.18040 -25.23037 -24.56803 -21.63644 -21.06123 -21.00638 -19.39766 -17.89481 -17.48629 -16.40271 -16.04115 -14.97696 -14.85644 -14.56722 -14.39785 -14.08267 -13.87576 -13.63996 -13.16393 -13.05736 -12.72075 -12.39180 -12.07842 -11.90170 -11.85167 -11.73871 -11.31336 -10.95819 -10.76969 -10.68667 -10.44008 -10.38902 -10.24897 -10.02035 -9.71044 -9.20433 -8.87839 -8.14657 -7.70509 -7.66622 -7.24887 -6.52174 -4.45433 2.01725 2.17614 2.67741 2.76767 3.14967 3.25825 3.35621 3.98278 4.31023 4.38913 4.48176 4.48470 5.14606 5.35514 5.38105 5.40651 5.50416 5.56584 5.68854 5.86890 6.03343 6.07169 6.09816 6.20393 6.35390 6.39583 6.53653 6.60680 6.87216 7.00151 7.04558 7.11678 7.23450 7.26208 7.42860 7.58962 7.69371 7.70483 7.77612 7.89562 8.09418 8.16988 8.46570 8.53702 8.79160 8.96682 9.94058 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.006188 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.395768 B = 4524.072969 C = 5477.928140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.164 4.164 3 C -0.076 4.076 4 C -0.170 4.170 5 C 0.233 3.767 6 N -0.662 5.662 7 C -0.004 4.004 8 C -0.074 4.074 9 C -0.257 4.257 10 C -0.081 4.081 11 C -0.212 4.212 12 C 0.101 3.899 13 C -0.502 4.502 14 H 0.082 0.918 15 C 0.044 3.956 16 N -0.783 5.783 17 Si 1.056 2.944 18 H -0.274 1.274 19 H -0.272 1.272 20 H -0.275 1.275 21 C -0.182 4.182 22 C -0.055 4.055 23 C 0.123 3.877 24 O -0.567 6.567 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.391 0.609 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.299 0.701 36 H 0.122 0.878 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 -5.514 -4.584 12.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.166 4.166 3 C -0.095 4.095 4 C -0.193 4.193 5 C 0.128 3.872 6 N -0.282 5.282 7 C -0.098 4.098 8 C -0.094 4.094 9 C -0.277 4.277 10 C -0.100 4.100 11 C -0.232 4.232 12 C 0.096 3.904 13 C -0.529 4.529 14 H 0.100 0.900 15 C -0.180 4.180 16 N -0.404 5.404 17 Si 0.879 3.121 18 H -0.199 1.199 19 H -0.198 1.198 20 H -0.200 1.200 21 C -0.205 4.205 22 C -0.056 4.056 23 C 0.046 3.954 24 O -0.372 6.372 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.131 0.869 29 H 0.141 0.859 30 H 0.225 0.775 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.745 -4.484 -2.935 11.121 hybrid contribution -0.002 -1.002 -1.652 1.932 sum -9.747 -5.486 -4.587 12.089 Atomic orbital electron populations 1.20599 0.92314 1.01557 1.01226 1.19134 0.94957 0.92318 1.10184 1.20609 0.93542 0.96559 0.98752 1.20733 0.93725 0.97333 1.07510 1.17986 0.84206 0.93301 0.91667 1.41186 1.01418 1.06858 1.78739 1.17258 1.07911 0.90863 0.93729 1.20814 0.97705 0.95096 0.95770 1.20130 1.11202 0.99563 0.96806 1.20386 0.98310 0.97899 0.93387 1.20797 1.06977 0.97669 0.97725 1.17810 0.89852 0.90616 0.92118 1.20460 1.14333 1.26601 0.91493 0.90003 1.27019 0.97528 0.90964 1.02448 1.70476 1.03716 1.28918 1.37328 0.83769 0.75467 0.78275 0.74560 1.19865 1.19769 1.19985 1.20255 0.93542 0.96277 1.10419 1.19033 0.93343 0.92441 1.00809 1.20866 0.90210 0.84926 0.99408 1.86529 1.36304 1.16621 1.97728 0.92297 0.92316 0.92723 0.86857 0.85902 0.77466 0.89193 0.89248 0.89313 0.87897 0.88859 0.85973 0.92762 0.92846 0.77853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 9.60 36.01 0.35 -0.87 16 2 C -0.16 -2.64 5.88 -104.57 -0.62 -3.26 16 3 C -0.08 -1.35 9.69 -39.61 -0.38 -1.73 16 4 C -0.17 -3.53 8.87 -39.36 -0.35 -3.88 16 5 C 0.23 4.83 5.41 -83.78 -0.45 4.38 16 6 N -0.66 -14.12 4.85 -8.04 -0.04 -14.15 16 7 C 0.00 -0.10 4.59 -83.28 -0.38 -0.48 16 8 C -0.07 -1.64 9.96 -39.41 -0.39 -2.03 16 9 C -0.26 -5.62 10.03 -39.37 -0.40 -6.01 16 10 C -0.08 -1.84 9.97 -39.98 -0.40 -2.24 16 11 C -0.21 -5.27 8.12 -39.29 -0.32 -5.59 16 12 C 0.10 2.55 4.74 -106.63 -0.51 2.05 16 13 C -0.50 -13.01 8.30 -37.91 -0.31 -13.32 16 14 H 0.08 2.19 6.59 -52.49 -0.35 1.84 16 15 C 0.04 1.11 4.78 -17.33 -0.08 1.02 16 16 N -0.78 -20.34 12.38 55.55 0.69 -19.65 16 17 Si 1.06 21.90 30.03 -169.99 -5.10 16.80 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 21 C -0.18 -3.45 9.23 -39.37 -0.36 -3.81 16 22 C -0.06 -0.93 5.88 -104.66 -0.62 -1.54 16 23 C 0.12 1.57 6.15 36.01 0.22 1.79 16 24 O -0.57 -7.26 12.13 -35.23 -0.43 -7.69 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 27 H 0.05 0.56 6.63 -51.93 -0.34 0.22 16 28 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.12 2.79 6.72 -52.49 -0.35 2.44 16 30 H 0.39 7.67 8.83 -40.82 -0.36 7.31 16 31 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.10 2.64 6.72 -52.49 -0.35 2.29 16 35 H 0.30 7.95 7.23 -40.82 -0.30 7.66 16 36 H 0.12 2.27 7.00 -52.49 -0.37 1.90 16 37 H 0.05 0.62 8.13 -51.93 -0.42 0.19 16 38 H 0.05 0.58 7.49 -51.93 -0.39 0.19 16 39 H 0.38 2.72 9.12 45.56 0.42 3.14 16 LS Contribution 324.84 15.07 4.90 4.90 Total: -1.00 -28.52 324.84 -9.14 -37.66 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.67 kcal Atomic # 6 Polarization: -30.52 SS G_CDS: -5.00 Total: -35.53 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.65 Total: -33.80 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.43 Total: -7.69 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.10 Total: 16.80 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.52 -9.14 -37.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210250101.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.678 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds