Wall clock time and date at job start Tue Mar 31 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38312 * 119.92282 * 2 1 4 4 C 1.38077 * 120.07901 * 180.02562 * 3 2 1 5 5 C 1.38951 * 119.92163 * 359.97438 * 4 3 2 6 6 N 1.39713 * 120.07728 * 179.97438 * 5 4 3 7 7 C 1.39716 * 120.00058 * 154.10463 * 6 5 4 8 8 C 1.39357 * 119.95384 * 328.09424 * 7 6 5 9 9 C 1.38467 * 120.42390 * 179.97438 * 8 7 6 10 10 C 1.37693 * 120.32724 * 0.04029 * 9 8 7 11 11 C 1.40747 * 119.89651 * 359.97438 * 10 9 8 12 12 C 1.41411 * 120.21314 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99401 * 334.46884 * 12 11 10 14 14 C 1.39922 * 120.00694 * 154.45842 * 12 11 10 15 15 N 1.30831 * 119.99909 * 344.66163 * 14 12 11 16 16 Si 1.86798 * 120.00185 * 164.65651 * 14 12 11 17 17 H 1.48503 * 109.46965 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47062 * 120.00588 * 16 14 12 19 19 H 1.48500 * 109.47164 * 240.00252 * 16 14 12 20 20 C 1.38293 * 119.95725 * 148.12149 * 7 6 5 21 21 C 1.38912 * 119.84840 * 0.25426 * 5 4 3 22 22 C 1.38125 * 119.91783 * 359.49399 * 21 5 4 23 23 C 1.50707 * 119.95831 * 180.25467 * 22 21 5 24 24 O 1.42904 * 109.46986 * 0.24954 * 23 22 21 25 25 H 1.09003 * 109.46994 * 90.01057 * 1 2 3 26 26 H 1.09007 * 109.47145 * 210.00171 * 1 2 3 27 27 H 1.08996 * 109.47746 * 330.00343 * 1 2 3 28 28 H 1.08004 * 119.96134 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.04160 * 179.97438 * 4 3 2 30 30 H 0.97002 * 119.99811 * 334.10559 * 6 5 4 31 31 H 1.08001 * 119.78592 * 0.02562 * 8 7 6 32 32 H 1.07999 * 119.83384 * 180.02562 * 9 8 7 33 33 H 1.08002 * 120.05200 * 180.02562 * 10 9 8 34 34 H 0.96999 * 119.99938 * 179.97438 * 15 14 12 35 35 H 1.08006 * 120.15847 * 0.27047 * 20 7 6 36 36 H 1.07995 * 120.03943 * 179.74685 * 21 5 4 37 37 H 1.08989 * 109.47118 * 120.25289 * 23 22 21 38 38 H 1.09004 * 109.46936 * 240.25536 * 23 22 21 39 39 H 0.96698 * 113.99919 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2025 -0.0005 5 6 4.2741 0.0001 -0.0005 6 7 5.6712 0.0001 -0.0016 7 6 6.3702 -1.0881 0.5268 8 6 5.8313 -1.8121 1.5886 9 6 6.5154 -2.8926 2.1194 10 6 7.7372 -3.2632 1.6038 11 6 8.2944 -2.5415 0.5316 12 6 9.5489 -2.9159 -0.0026 13 1 10.2619 -3.4444 0.6128 14 6 9.8666 -2.6020 -1.3287 15 7 8.9228 -2.2409 -2.1596 16 14 11.6384 -2.6985 -1.9126 17 1 12.5074 -3.1291 -0.7880 18 1 11.7413 -3.6808 -3.0215 19 1 12.0748 -1.3627 -2.3927 20 6 7.5962 -1.4450 -0.0043 21 6 3.5780 -1.2020 -0.0053 22 6 2.1967 -1.1983 0.0005 23 6 1.4406 -2.5020 0.0011 24 8 2.3671 -3.5899 0.0009 25 1 -0.3633 -0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5137 28 1 1.6550 2.1330 -0.0004 29 1 4.1158 2.1389 -0.0010 30 1 6.1559 0.7557 -0.3692 31 1 4.8734 -1.5290 1.9995 32 1 6.0887 -3.4472 2.9420 33 1 8.2668 -4.1070 2.0210 34 1 9.1431 -2.0229 -3.0787 35 1 8.0172 -0.8818 -0.8240 36 1 4.1161 -2.1383 -0.0095 37 1 0.8143 -2.5583 0.8912 38 1 0.8135 -2.5587 -0.8887 39 1 1.9496 -4.4621 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210251605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:03 Heat of formation + Delta-G solvation = -28.907539 kcal Electronic energy + Delta-G solvation = -21375.305935 eV Core-core repulsion = 18245.975458 eV Total energy + Delta-G solvation = -3129.330477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99468 -39.46168 -37.70364 -36.61220 -35.25727 -32.89259 -32.14698 -31.42002 -29.75999 -27.64339 -27.04294 -26.19149 -23.32868 -22.79572 -22.01376 -21.33874 -19.29795 -18.33772 -17.99219 -17.46960 -16.65848 -16.52529 -16.04070 -15.89078 -15.60524 -15.24733 -14.84727 -14.62594 -14.43292 -14.18689 -14.17696 -13.64160 -13.36004 -12.98800 -12.96481 -12.81172 -12.75239 -12.56041 -12.17715 -12.06841 -11.80647 -11.60266 -11.58711 -11.30438 -11.13097 -10.85036 -9.59737 -9.37113 -9.30984 -8.62630 -7.94018 -6.37635 0.44015 0.54602 1.01712 1.22528 1.37624 1.51727 1.53603 2.20981 2.58021 2.74393 2.93252 3.41780 3.75414 3.94575 4.12357 4.24096 4.32814 4.42126 4.48925 4.56852 4.65803 4.68213 4.78216 4.92479 4.96146 5.02162 5.08304 5.14602 5.20107 5.27397 5.39357 5.45386 5.56227 5.62661 5.80993 5.89981 5.98143 6.10734 6.11870 6.25099 6.50002 6.83058 6.90577 6.96312 6.99211 7.08481 8.35028 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023242 B = 0.004230 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.410370 B = 6617.098077 C = 6971.927483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.133 4.133 3 C -0.084 4.084 4 C -0.185 4.185 5 C 0.171 3.829 6 N -0.688 5.688 7 C 0.182 3.818 8 C -0.260 4.260 9 C -0.072 4.072 10 C -0.260 4.260 11 C 0.100 3.900 12 C -0.499 4.499 13 H 0.077 0.923 14 C 0.034 3.966 15 N -0.828 5.828 16 Si 0.984 3.016 17 H -0.257 1.257 18 H -0.267 1.267 19 H -0.265 1.265 20 C -0.223 4.223 21 C -0.164 4.164 22 C -0.077 4.077 23 C 0.118 3.882 24 O -0.593 6.593 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.155 0.845 29 H 0.134 0.866 30 H 0.405 0.595 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.285 0.715 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.376 4.557 1.254 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.135 4.135 3 C -0.102 4.102 4 C -0.207 4.207 5 C 0.072 3.928 6 N -0.311 5.311 7 C 0.086 3.914 8 C -0.282 4.282 9 C -0.091 4.091 10 C -0.280 4.280 11 C 0.097 3.903 12 C -0.528 4.528 13 H 0.095 0.905 14 C -0.180 4.180 15 N -0.454 5.454 16 Si 0.805 3.195 17 H -0.180 1.180 18 H -0.191 1.191 19 H -0.189 1.189 20 C -0.246 4.246 21 C -0.186 4.186 22 C -0.078 4.078 23 C 0.042 3.958 24 O -0.402 6.402 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.172 0.828 29 H 0.152 0.848 30 H 0.240 0.760 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -15.016 4.995 1.064 15.861 hybrid contribution 1.004 -0.415 -0.566 1.225 sum -14.012 4.580 0.499 14.750 Atomic orbital electron populations 1.20756 0.88557 1.03735 1.02968 1.19809 0.97661 0.91358 1.04681 1.21051 0.92546 0.98516 0.98070 1.20979 0.95413 0.95795 1.08477 1.18134 0.82944 0.94722 0.97028 1.42080 1.02955 1.20421 1.65611 1.17662 0.92293 0.89026 0.92452 1.20315 1.02497 1.03518 1.01844 1.20651 0.94249 0.95826 0.98335 1.21136 0.98465 1.03628 1.04782 1.17757 0.92607 0.89400 0.90562 1.19852 1.00908 1.34683 0.97402 0.90479 1.26776 1.03371 0.91647 0.96197 1.69923 1.35756 1.34019 1.05682 0.85136 0.76712 0.78986 0.78701 1.18020 1.19144 1.18919 1.20951 0.97851 1.01148 1.04604 1.20782 0.94928 0.96767 1.06131 1.19751 0.92559 0.95487 0.99985 1.21037 0.89828 0.83360 1.01619 1.86592 1.37500 1.18242 1.97824 0.90461 0.90912 0.90147 0.82752 0.84777 0.75961 0.88277 0.86245 0.88265 0.90421 0.87693 0.87730 0.90144 0.90397 0.75289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 9.59 71.23 0.68 -0.92 16 2 C -0.13 -3.31 5.88 -19.84 -0.12 -3.43 16 3 C -0.08 -2.07 9.69 22.25 0.22 -1.85 16 4 C -0.18 -5.60 9.94 22.40 0.22 -5.38 16 5 C 0.17 6.56 6.03 38.22 0.23 6.79 16 6 N -0.69 -29.20 5.46 -180.65 -0.99 -30.19 16 7 C 0.18 9.05 5.89 38.17 0.22 9.28 16 8 C -0.26 -12.55 7.79 22.59 0.18 -12.38 16 9 C -0.07 -3.43 10.01 22.20 0.22 -3.21 16 10 C -0.26 -13.56 9.79 22.75 0.22 -13.34 16 11 C 0.10 5.67 5.57 -21.31 -0.12 5.55 16 12 C -0.50 -27.94 9.06 23.46 0.21 -27.73 16 13 H 0.08 4.15 7.89 -2.91 -0.02 4.13 16 14 C 0.03 1.79 5.18 85.25 0.44 2.23 16 15 N -0.83 -45.14 10.89 21.82 0.24 -44.90 16 16 Si 0.98 39.39 29.59 68.60 2.03 41.42 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 20 C -0.22 -12.35 8.58 22.86 0.20 -12.15 16 21 C -0.16 -6.53 7.21 22.40 0.16 -6.37 16 22 C -0.08 -2.38 5.88 -19.88 -0.12 -2.50 16 23 C 0.12 2.85 6.15 71.24 0.44 3.29 16 24 O -0.59 -17.35 12.14 -148.98 -1.81 -19.16 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 0.96 6.63 -2.38 -0.02 0.95 16 27 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 28 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 29 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.40 15.56 8.89 -92.71 -0.82 14.73 16 31 H 0.10 4.58 6.60 -2.91 -0.02 4.56 16 32 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 33 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 34 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 35 H 0.11 6.04 6.16 -2.91 -0.02 6.02 16 36 H 0.10 4.98 5.33 -2.91 -0.02 4.97 16 37 H 0.08 1.51 7.49 -2.39 -0.02 1.49 16 38 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.40 7.05 9.12 -74.06 -0.68 6.37 16 Total: -1.00 -69.83 324.63 2.36 -67.47 By element: Atomic # 1 Polarization: 47.88 SS G_CDS: -0.41 Total: 47.47 kcal Atomic # 6 Polarization: -65.41 SS G_CDS: 3.30 Total: -62.11 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -0.75 Total: -75.09 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -1.81 Total: -19.16 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -69.83 2.36 -67.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210251605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.558 kcal (2) G-P(sol) polarization free energy of solvation -69.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds