Wall clock time and date at job start Tue Mar 31 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38105 * 120.04283 * 2 1 4 4 C 1.38284 * 120.08068 * 179.97438 * 3 2 1 5 5 C 1.38323 * 120.15976 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.96129 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.47198 * 89.99486 * 6 5 4 8 8 C 1.38067 * 120.08079 * 359.97438 * 5 4 3 9 9 C 1.38958 * 120.03972 * 179.72149 * 2 1 3 10 10 N 1.39597 * 120.07506 * 359.97438 * 9 2 1 11 11 C 1.38816 * 119.99544 * 171.88109 * 10 9 2 12 12 C 1.39608 * 119.84316 * 321.51770 * 11 10 9 13 13 C 1.36319 * 120.15436 * 179.72044 * 12 11 10 14 14 C 1.40901 * 119.83636 * 0.55530 * 13 12 11 15 15 C 1.41108 * 120.14927 * 179.70119 * 14 13 12 16 16 H 1.08003 * 119.99561 * 157.80020 * 15 14 13 17 17 C 1.39847 * 120.00188 * 337.80199 * 15 14 13 18 18 N 1.30917 * 119.99890 * 332.01941 * 17 15 14 19 19 Si 1.86799 * 120.00237 * 152.01740 * 17 15 14 20 20 H 1.48503 * 109.47045 * 94.98618 * 19 17 15 21 21 H 1.48494 * 109.47198 * 214.98603 * 19 17 15 22 22 H 1.48499 * 109.47037 * 334.98892 * 19 17 15 23 23 C 1.40903 * 119.69877 * 359.71455 * 14 13 12 24 24 C 1.36311 * 119.83688 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.47317 * 90.00007 * 1 2 3 26 26 H 1.08996 * 109.47139 * 210.00467 * 1 2 3 27 27 H 1.09002 * 109.47137 * 329.99875 * 1 2 3 28 28 H 1.08001 * 119.95950 * 359.97438 * 3 2 1 29 29 H 1.07995 * 119.92129 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47311 * 209.99838 * 6 5 4 31 31 H 1.09003 * 109.46661 * 329.99547 * 6 5 4 32 32 H 0.96699 * 114.00262 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.03726 * 179.97438 * 8 5 4 34 34 H 0.96999 * 120.00430 * 351.88246 * 10 9 2 35 35 H 1.07994 * 119.92547 * 359.97438 * 12 11 10 36 36 H 1.07994 * 120.08068 * 180.29301 * 13 12 11 37 37 H 0.96991 * 119.99849 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.07975 * 179.97438 * 23 14 13 39 39 H 1.07993 * 119.91905 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1955 0.0000 4 6 3.5812 1.1964 0.0005 5 6 4.2770 0.0009 0.0005 6 6 5.7840 0.0071 0.0005 7 8 6.2603 0.0092 1.3478 8 6 3.5925 -1.1981 0.0005 9 6 2.2026 -1.2029 0.0058 10 7 1.5070 -2.4132 0.0123 11 6 2.1931 -3.6088 -0.1517 12 6 3.2597 -3.6802 -1.0497 13 6 3.9415 -4.8496 -1.2115 14 6 3.5598 -5.9908 -0.4785 15 6 4.2569 -7.2062 -0.6455 16 1 4.2262 -7.9572 0.1300 17 6 4.9876 -7.4383 -1.8152 18 7 4.6299 -6.8627 -2.9353 19 14 6.4738 -8.5693 -1.7792 20 1 6.0643 -9.9378 -2.1854 21 1 7.5050 -8.0617 -2.7193 22 1 7.0333 -8.6078 -0.4042 23 6 2.4788 -5.9129 0.4218 24 6 1.8094 -4.7357 0.5776 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6584 2.1308 -0.0004 29 1 4.1193 2.1328 0.0010 30 1 6.1510 -0.8814 -0.5133 31 1 6.1436 0.8986 -0.5134 32 1 7.2243 0.0128 1.4242 33 1 4.1364 -2.1312 0.0001 34 1 0.5444 -2.4188 0.1313 35 1 3.5480 -2.8060 -1.6144 36 1 4.7694 -4.9022 -1.9029 37 1 5.1364 -7.0240 -3.7466 38 1 2.1808 -6.7839 0.9865 39 1 0.9803 -4.6746 1.2670 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210679398.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:08 Heat of formation + Delta-G solvation = -5.034302 kcal Electronic energy + Delta-G solvation = -21293.109898 eV Core-core repulsion = 18164.814643 eV Total energy + Delta-G solvation = -3128.295256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.75415 -37.80894 -36.64182 -34.99587 -33.37722 -32.52758 -29.94314 -29.50809 -28.38915 -27.91888 -24.94043 -24.04940 -22.05353 -21.49751 -20.43251 -19.76398 -17.46086 -17.30699 -16.72148 -16.36690 -15.38709 -15.12039 -14.79064 -14.05896 -14.02871 -13.82664 -13.46193 -13.27011 -13.17711 -12.68252 -12.26879 -12.17476 -12.04382 -11.94605 -11.70210 -11.33302 -11.20915 -11.16168 -10.89822 -10.72999 -10.50855 -9.96786 -9.95160 -9.88089 -9.45050 -9.08053 -8.32592 -7.80621 -7.62714 -6.97647 -6.51230 -4.29130 1.65587 1.92570 2.72568 2.97046 3.03179 3.05897 3.17717 3.86869 4.04105 4.11528 4.48391 4.71566 5.08054 5.16451 5.30746 5.36709 5.48194 5.55910 5.63471 5.75888 5.77067 5.92298 6.09543 6.12850 6.21015 6.28629 6.38123 6.73004 6.80424 6.86505 6.90011 6.98324 7.05115 7.15088 7.27166 7.48417 7.50646 7.71649 7.72205 7.95105 8.11097 8.29501 8.43699 8.55837 8.79922 8.92257 10.03386 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.004618 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.009239 B = 6061.668647 C = 7097.245215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.171 4.171 3 C -0.082 4.082 4 C -0.168 4.168 5 C -0.058 4.058 6 C 0.118 3.882 7 O -0.566 6.566 8 C -0.167 4.167 9 C 0.219 3.781 10 N -0.664 5.664 11 C 0.005 3.995 12 C -0.112 4.112 13 C -0.159 4.159 14 C 0.105 3.895 15 C -0.462 4.462 16 H 0.080 0.920 17 C 0.083 3.917 18 N -0.777 5.777 19 Si 0.899 3.101 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.214 4.214 24 C -0.104 4.104 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.375 0.625 33 H 0.141 0.859 34 H 0.394 0.606 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.283 0.717 38 H 0.095 0.905 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.379 11.273 2.218 11.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.175 4.175 3 C -0.100 4.100 4 C -0.189 4.189 5 C -0.059 4.059 6 C 0.041 3.959 7 O -0.371 6.371 8 C -0.189 4.189 9 C 0.114 3.886 10 N -0.283 5.283 11 C -0.089 4.089 12 C -0.132 4.132 13 C -0.179 4.179 14 C 0.102 3.898 15 C -0.491 4.491 16 H 0.098 0.902 17 C -0.137 4.137 18 N -0.400 5.400 19 Si 0.723 3.277 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.234 4.234 24 C -0.125 4.125 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.222 0.778 33 H 0.158 0.842 34 H 0.230 0.770 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.896 11.123 2.053 11.346 hybrid contribution 0.848 -0.536 -0.272 1.039 sum -0.047 10.587 1.781 10.736 Atomic orbital electron populations 1.20541 0.91821 1.01796 1.01607 1.19329 0.95435 0.91878 1.10906 1.20590 0.93797 0.96344 0.99304 1.20611 0.93932 0.96788 1.07539 1.19289 0.93638 0.93077 0.99856 1.20992 0.91294 1.00075 0.83569 1.86590 1.26200 1.97709 1.26608 1.21095 0.92619 0.98745 1.06456 1.17680 0.91386 0.85567 0.93987 1.41727 1.08162 1.02016 1.76427 1.17074 1.02065 0.85560 1.04218 1.20412 0.97722 0.97691 0.97397 1.20763 1.01873 0.91463 1.03781 1.17582 0.89315 0.92812 0.90052 1.19492 1.25805 1.01811 1.01950 0.90164 1.25923 0.97544 0.95733 0.94527 1.69930 1.34478 1.36042 0.99571 0.86448 0.81297 0.80261 0.79713 1.19493 1.19903 1.18174 1.20507 0.99664 0.96402 1.06808 1.20103 1.00364 0.93502 0.98485 0.91880 0.92501 0.91941 0.86680 0.87081 0.92671 0.93186 0.77833 0.84164 0.77014 0.88554 0.87050 0.90646 0.88672 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.65 36.00 0.35 -0.89 16 2 C -0.17 -2.65 5.90 -104.40 -0.62 -3.26 16 3 C -0.08 -1.18 9.70 -39.61 -0.38 -1.56 16 4 C -0.17 -2.52 9.70 -39.53 -0.38 -2.90 16 5 C -0.06 -0.96 5.51 -104.65 -0.58 -1.53 16 6 C 0.12 1.65 7.17 36.01 0.26 1.90 16 7 O -0.57 -8.02 13.64 -35.23 -0.48 -8.50 16 8 C -0.17 -3.15 7.56 -39.37 -0.30 -3.45 16 9 C 0.22 3.97 6.40 -83.78 -0.54 3.44 16 10 N -0.66 -12.38 5.35 -8.30 -0.04 -12.43 16 11 C 0.00 0.10 5.99 -83.68 -0.50 -0.40 16 12 C -0.11 -2.59 7.24 -39.76 -0.29 -2.88 16 13 C -0.16 -4.02 8.70 -39.27 -0.34 -4.36 16 14 C 0.11 2.73 5.58 -106.79 -0.60 2.14 16 15 C -0.46 -11.95 8.97 -37.89 -0.34 -12.29 16 16 H 0.08 2.00 7.98 -52.48 -0.42 1.58 16 17 C 0.08 2.03 4.90 -17.34 -0.08 1.94 16 18 N -0.78 -19.52 11.47 55.54 0.64 -18.88 16 19 Si 0.90 18.01 29.64 -169.99 -5.04 12.97 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 C -0.21 -5.14 9.74 -39.27 -0.38 -5.52 16 24 C -0.10 -2.30 9.90 -39.77 -0.39 -2.70 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 27 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 29 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.38 3.28 9.12 45.56 0.42 3.69 16 33 H 0.14 2.91 5.18 -52.49 -0.27 2.64 16 34 H 0.39 6.41 6.78 -40.82 -0.28 6.14 16 35 H 0.10 2.13 6.32 -52.49 -0.33 1.79 16 36 H 0.11 2.89 6.37 -52.49 -0.33 2.55 16 37 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 38 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -28.94 325.10 -9.20 -38.14 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -4.06 Total: 16.12 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: -5.11 Total: -32.33 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.59 Total: -31.31 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.48 Total: -8.50 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.04 Total: 12.97 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.94 -9.20 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210679398.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.104 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds