Wall clock time and date at job start Tue Mar 31 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38122 * 120.03585 * 2 1 4 4 C 1.38266 * 120.07603 * 180.27002 * 3 2 1 5 5 C 1.38323 * 120.15164 * 359.49512 * 4 3 2 6 6 C 1.50697 * 119.96164 * 180.27636 * 5 4 3 7 7 O 1.42904 * 109.47078 * 270.22688 * 6 5 4 8 8 C 1.38071 * 120.07154 * 0.50573 * 5 4 3 9 9 C 1.38907 * 120.04217 * 180.02562 * 2 1 3 10 10 N 1.39713 * 120.07353 * 0.02562 * 9 2 1 11 11 C 1.39718 * 120.00145 * 172.56722 * 10 9 2 12 12 C 1.39352 * 119.94973 * 318.24046 * 11 10 9 13 13 C 1.38478 * 120.42155 * 179.76471 * 12 11 10 14 14 C 1.37700 * 120.32438 * 0.50922 * 13 12 11 15 15 C 1.40756 * 119.89697 * 359.75047 * 14 13 12 16 16 C 1.41402 * 120.20875 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00447 * 33.59234 * 16 15 14 18 18 C 1.39931 * 119.99959 * 213.60127 * 16 15 14 19 19 N 1.30836 * 119.99796 * 358.37998 * 18 16 15 20 20 Si 1.86799 * 120.00106 * 178.37941 * 18 16 15 21 21 H 1.48497 * 109.46869 * 89.99760 * 20 18 16 22 22 H 1.48500 * 109.47369 * 209.99706 * 20 18 16 23 23 H 1.48501 * 109.46895 * 330.00028 * 20 18 16 24 24 C 1.38294 * 119.95333 * 138.51561 * 11 10 9 25 25 H 1.08999 * 109.46728 * 90.00326 * 1 2 3 26 26 H 1.08996 * 109.46799 * 209.99716 * 1 2 3 27 27 H 1.08993 * 109.47470 * 330.00376 * 1 2 3 28 28 H 1.08000 * 119.96303 * 359.97438 * 3 2 1 29 29 H 1.08005 * 119.92726 * 179.71943 * 4 3 2 30 30 H 1.08992 * 109.47316 * 30.23048 * 6 5 4 31 31 H 1.08996 * 109.46858 * 150.23463 * 6 5 4 32 32 H 0.96692 * 114.00033 * 180.02562 * 7 6 5 33 33 H 1.08004 * 120.03823 * 179.77107 * 8 5 4 34 34 H 0.97001 * 119.99973 * 352.57218 * 10 9 2 35 35 H 1.07997 * 119.79106 * 0.02562 * 12 11 10 36 36 H 1.07998 * 119.84005 * 180.26340 * 13 12 11 37 37 H 1.08002 * 120.05238 * 179.76616 * 14 13 12 38 38 H 0.96996 * 119.99408 * 180.02562 * 19 18 16 39 39 H 1.07995 * 120.16463 * 359.96039 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5810 1.1967 -0.0056 5 6 4.2767 0.0012 -0.0008 6 6 5.7836 0.0072 -0.0006 7 8 6.2601 0.0091 -1.3479 8 6 3.5919 -1.1978 -0.0008 9 6 2.2024 -1.2025 -0.0005 10 7 1.5063 -2.4138 -0.0016 11 6 2.1986 -3.6172 -0.1587 12 6 3.2292 -3.7103 -1.0919 13 6 3.9250 -4.8968 -1.2523 14 6 3.5987 -6.0015 -0.4978 15 6 2.5564 -5.9243 0.4450 16 6 2.2154 -7.0548 1.2228 17 1 2.9820 -7.7516 1.5280 18 6 0.8845 -7.2709 1.5971 19 7 -0.0395 -6.4104 1.2542 20 14 0.4270 -8.7881 2.5861 21 1 0.5247 -8.4819 4.0359 22 1 -0.9639 -9.1920 2.2582 23 1 1.3565 -9.8966 2.2505 24 6 1.8562 -4.7160 0.6082 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5137 28 1 1.6584 2.1310 -0.0004 29 1 4.1192 2.1331 -0.0102 30 1 6.1433 0.8986 0.5132 31 1 6.1505 -0.8813 0.5132 32 1 7.2240 0.0126 -1.4242 33 1 4.1356 -2.1310 -0.0007 34 1 0.5424 -2.4194 0.1066 35 1 3.4898 -2.8504 -1.6911 36 1 4.7249 -4.9572 -1.9754 37 1 4.1417 -6.9258 -0.6292 38 1 -0.9619 -6.5601 1.5140 39 1 1.0551 -4.6462 1.3291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210681439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:11 Heat of formation + Delta-G solvation = -7.381915 kcal Electronic energy + Delta-G solvation = -21353.461656 eV Core-core repulsion = 18225.064600 eV Total energy + Delta-G solvation = -3128.397056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.74190 -37.75760 -36.66030 -34.82916 -33.44984 -32.56884 -29.81211 -29.53512 -28.20515 -27.35260 -25.30962 -24.14299 -22.28898 -21.30929 -20.26050 -19.87073 -17.45937 -17.35584 -16.67858 -15.90946 -15.41524 -15.07747 -14.62671 -14.44769 -13.97709 -13.85065 -13.42665 -13.28652 -13.17707 -12.72164 -12.46817 -12.17097 -12.04365 -11.81043 -11.60941 -11.17326 -11.13634 -10.96129 -10.86864 -10.63658 -10.48711 -10.03751 -9.99049 -9.75932 -9.54990 -9.24341 -8.35243 -7.83133 -7.33474 -6.74987 -6.38892 -4.45538 1.62673 1.89583 2.75527 2.96752 3.06735 3.09216 3.18603 3.93917 3.99353 4.09177 4.63001 4.68198 5.05828 5.13427 5.29871 5.33794 5.47322 5.52158 5.59844 5.74820 5.79952 5.93634 6.07876 6.16226 6.28293 6.36627 6.47032 6.70042 6.71412 6.84836 6.94544 7.02970 7.04751 7.23563 7.29585 7.35916 7.66916 7.73788 7.79664 7.91460 8.07586 8.33767 8.39431 8.66667 8.88276 8.91601 10.24698 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.004511 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.195804 B = 6205.108331 C = 7165.506122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.163 4.163 3 C -0.084 4.084 4 C -0.163 4.163 5 C -0.061 4.061 6 C 0.119 3.881 7 O -0.565 6.565 8 C -0.162 4.162 9 C 0.218 3.782 10 N -0.677 5.677 11 C 0.154 3.846 12 C -0.250 4.250 13 C -0.086 4.086 14 C -0.225 4.225 15 C 0.120 3.880 16 C -0.464 4.464 17 H 0.077 0.923 18 C 0.071 3.929 19 N -0.813 5.813 20 Si 0.915 3.085 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.173 4.173 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.375 0.625 33 H 0.141 0.859 34 H 0.402 0.598 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.277 0.723 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 11.280 -0.314 11.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.167 4.167 3 C -0.102 4.102 4 C -0.184 4.184 5 C -0.062 4.062 6 C 0.042 3.958 7 O -0.371 6.371 8 C -0.184 4.184 9 C 0.114 3.886 10 N -0.298 5.298 11 C 0.061 3.939 12 C -0.271 4.271 13 C -0.105 4.105 14 C -0.245 4.245 15 C 0.117 3.883 16 C -0.494 4.494 17 H 0.095 0.905 18 C -0.144 4.144 19 N -0.440 5.440 20 Si 0.739 3.261 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.195 4.195 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.221 0.779 33 H 0.159 0.841 34 H 0.239 0.761 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.146 11.173 -0.427 11.616 hybrid contribution -0.141 -0.695 0.540 0.891 sum 3.005 10.478 0.113 10.901 Atomic orbital electron populations 1.20579 0.91643 1.02090 1.01781 1.19373 0.95604 0.91814 1.09953 1.20613 0.93802 0.96399 0.99429 1.20638 0.93948 0.96836 1.06944 1.19291 0.93651 0.93057 1.00221 1.20969 0.91257 0.99998 0.83561 1.86601 1.26158 1.97704 1.26594 1.21083 0.92554 0.98810 1.05951 1.17679 0.91409 0.85502 0.94014 1.42317 1.08737 1.01998 1.76792 1.17640 0.95075 0.84981 0.96211 1.20407 1.03911 0.98445 1.04380 1.20405 0.98344 0.93072 0.98640 1.21131 1.04586 0.97319 1.01434 1.17453 0.89581 0.91662 0.89642 1.19528 0.93405 1.07359 1.29157 0.90531 1.25859 0.96410 0.97775 0.94313 1.69752 1.02321 1.34177 1.37746 0.86208 0.78296 0.81528 0.80021 1.19516 1.20310 1.18700 1.21432 1.05201 0.91369 1.01518 0.91759 0.92168 0.91816 0.86546 0.86996 0.93175 0.92782 0.77869 0.84111 0.76087 0.88471 0.88974 0.88780 0.91198 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 9.63 36.01 0.35 -1.01 16 2 C -0.16 -2.58 5.90 -104.42 -0.62 -3.20 16 3 C -0.08 -1.20 9.70 -39.61 -0.38 -1.59 16 4 C -0.16 -2.40 9.70 -39.54 -0.38 -2.78 16 5 C -0.06 -0.99 5.51 -104.65 -0.58 -1.56 16 6 C 0.12 1.57 7.17 36.00 0.26 1.83 16 7 O -0.57 -7.55 13.64 -35.23 -0.48 -8.03 16 8 C -0.16 -3.01 7.68 -39.38 -0.30 -3.31 16 9 C 0.22 4.02 6.40 -83.76 -0.54 3.49 16 10 N -0.68 -13.45 5.38 -8.45 -0.05 -13.50 16 11 C 0.15 3.54 5.86 -83.83 -0.49 3.05 16 12 C -0.25 -5.61 7.37 -39.08 -0.29 -5.90 16 13 C -0.09 -1.91 10.02 -39.69 -0.40 -2.31 16 14 C -0.22 -5.43 9.79 -38.83 -0.38 -5.81 16 15 C 0.12 3.14 5.55 -106.85 -0.59 2.54 16 16 C -0.46 -12.15 9.05 -37.74 -0.34 -12.49 16 17 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 18 C 0.07 1.78 5.40 -17.34 -0.09 1.68 16 19 N -0.81 -20.73 10.62 55.55 0.59 -20.14 16 20 Si 0.91 18.73 29.56 -169.99 -5.02 13.71 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.17 -4.40 8.58 -38.67 -0.33 -4.74 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.80 6.46 -51.93 -0.34 0.46 16 27 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 28 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 30 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.37 2.95 9.12 45.56 0.42 3.36 16 33 H 0.14 2.83 5.35 -52.48 -0.28 2.55 16 34 H 0.40 7.40 6.79 -40.82 -0.28 7.13 16 35 H 0.10 2.12 6.63 -52.49 -0.35 1.77 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 39 H 0.13 3.45 6.14 -52.49 -0.32 3.13 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -29.06 325.08 -9.24 -38.30 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -4.07 Total: 16.88 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: -5.11 Total: -32.11 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.54 Total: -33.64 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.48 Total: -8.03 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.06 -9.24 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210681439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.917 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds