Wall clock time and date at job start Tue Mar 31 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36003 * 116.99887 * 2 1 4 4 C 1.38506 * 120.07807 * 0.02756 * 3 2 1 5 5 C 1.38280 * 120.01616 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.90741 * 179.97438 * 5 4 3 7 7 C 1.38268 * 120.18467 * 0.02562 * 5 4 3 8 8 C 1.38206 * 120.16563 * 359.70156 * 7 5 4 9 9 C 1.38760 * 119.97425 * 0.55182 * 8 7 5 10 10 N 1.39972 * 120.08978 * 179.75101 * 9 8 7 11 11 C 1.39695 * 119.99617 * 251.14408 * 10 9 8 12 12 C 1.39362 * 119.95453 * 6.08189 * 11 10 9 13 13 C 1.38470 * 120.41921 * 179.97438 * 12 11 10 14 14 C 1.37689 * 120.32871 * 0.04164 * 13 12 11 15 15 C 1.40756 * 119.90256 * 359.96235 * 14 13 12 16 16 C 1.41411 * 120.21094 * 180.29358 * 15 14 13 17 17 H 1.07989 * 119.99912 * 331.83677 * 16 15 14 18 18 C 1.39929 * 119.99889 * 151.83174 * 16 15 14 19 19 N 1.30833 * 120.00073 * 347.52330 * 18 16 15 20 20 Si 1.86799 * 119.99747 * 167.52318 * 18 16 15 21 21 H 1.48500 * 109.46953 * 60.00230 * 20 18 16 22 22 H 1.48501 * 109.47037 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46945 * 300.00150 * 20 18 16 24 24 C 1.38309 * 119.95184 * 186.06906 * 11 10 9 25 25 H 1.09009 * 109.46746 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47142 * 299.99209 * 1 2 3 27 27 H 1.08997 * 109.47639 * 60.00192 * 1 2 3 28 28 H 1.08004 * 119.99383 * 359.94908 * 4 3 2 29 29 H 1.08994 * 109.47085 * 89.99909 * 6 5 4 30 30 H 1.08996 * 109.47003 * 210.00135 * 6 5 4 31 31 H 1.09000 * 109.47005 * 329.99509 * 6 5 4 32 32 H 1.08004 * 119.91676 * 180.02562 * 7 5 4 33 33 H 1.07993 * 120.01364 * 180.29999 * 8 7 5 34 34 H 0.96993 * 120.00297 * 71.13516 * 10 9 8 35 35 H 1.07998 * 119.78978 * 359.97438 * 12 11 10 36 36 H 1.07996 * 119.83261 * 180.02562 * 13 12 11 37 37 H 1.08005 * 120.05248 * 179.97438 * 14 13 12 38 38 H 0.97001 * 120.00087 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.16428 * 0.03656 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2936 2.3744 0.0006 5 6 1.9227 3.6058 0.0011 6 6 1.1012 4.8693 0.0012 7 6 3.3033 3.6812 0.0005 8 6 4.0619 2.5259 0.0057 9 6 3.4377 1.2867 -0.0002 10 7 4.2036 0.1151 -0.0003 11 6 4.2631 -0.6803 -1.1471 12 6 3.6651 -0.2444 -2.3281 13 6 3.7187 -1.0249 -3.4706 14 6 4.3632 -2.2414 -3.4520 15 6 4.9718 -2.6951 -2.2667 16 6 5.6408 -3.9407 -2.2419 17 1 5.3349 -4.7313 -2.9109 18 6 6.6993 -4.1487 -1.3507 19 7 7.2308 -3.1343 -0.7181 20 14 7.3535 -5.8748 -1.0642 21 1 7.8490 -6.4355 -2.3469 22 1 8.4663 -5.8257 -0.0821 23 1 6.2649 -6.7352 -0.5354 24 6 4.9156 -1.8992 -1.1090 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 0.2150 2.3192 0.0002 29 1 0.9028 5.1736 1.0288 30 1 1.6494 5.6591 -0.5123 31 1 0.1572 4.6889 -0.5131 32 1 3.7902 4.6453 0.0014 33 1 5.1400 2.5877 0.0101 34 1 4.6932 -0.1444 0.7958 35 1 3.1567 0.7081 -2.3523 36 1 3.2524 -0.6777 -4.3808 37 1 4.4019 -2.8467 -4.3457 38 1 7.9644 -3.2785 -0.1000 39 1 5.3791 -2.2383 -0.1944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211116547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:32 Heat of formation + Delta-G solvation = 8.326148 kcal Electronic energy + Delta-G solvation = -21529.672969 eV Core-core repulsion = 18401.957066 eV Total energy + Delta-G solvation = -3127.715903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.12405 -37.71384 -37.24581 -34.99610 -33.26663 -31.37169 -29.92479 -29.35538 -28.10794 -27.37386 -25.25027 -25.02710 -22.06171 -21.38930 -20.87868 -19.91883 -17.64921 -17.08085 -16.33658 -16.03641 -15.69749 -15.30029 -14.64294 -14.45268 -14.14270 -13.80109 -13.71579 -13.62354 -12.79457 -12.70142 -12.48585 -12.19889 -11.99318 -11.88395 -11.64203 -11.38453 -11.09803 -11.01904 -10.90416 -10.72677 -10.57845 -10.38929 -9.64167 -9.42060 -9.30548 -8.91306 -8.50061 -7.79090 -7.19938 -6.63476 -6.16224 -4.25757 1.46912 1.65184 2.94549 3.13226 3.16925 3.26799 3.38512 3.56348 3.89553 4.03923 4.29151 4.81081 4.85738 4.99605 5.15790 5.23522 5.28122 5.43157 5.52394 5.61159 5.68189 5.74288 5.82983 5.88585 6.05694 6.33876 6.40367 6.58355 6.67538 6.72143 6.89993 6.98724 7.17947 7.21268 7.43923 7.47854 7.63405 7.93363 8.03362 8.15588 8.24389 8.55820 8.74363 8.89868 9.07146 9.16063 10.36389 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.004191 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.615274 B = 6679.396883 C = 6885.811709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.292 6.292 3 C 0.125 3.875 4 C -0.207 4.207 5 C -0.067 4.067 6 C -0.110 4.110 7 C -0.151 4.151 8 C -0.094 4.094 9 C 0.143 3.857 10 N -0.704 5.704 11 C 0.215 3.785 12 C -0.274 4.274 13 C -0.072 4.072 14 C -0.251 4.251 15 C 0.137 3.863 16 C -0.467 4.467 17 H 0.074 0.926 18 C 0.076 3.924 19 N -0.802 5.802 20 Si 0.907 3.093 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.266 1.266 24 C -0.215 4.215 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.124 0.876 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.399 0.601 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.276 0.724 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.568 11.097 4.574 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.204 6.204 3 C 0.077 3.923 4 C -0.227 4.227 5 C -0.067 4.067 6 C -0.167 4.167 7 C -0.170 4.170 8 C -0.114 4.114 9 C 0.048 3.952 10 N -0.334 5.334 11 C 0.119 3.881 12 C -0.297 4.297 13 C -0.091 4.091 14 C -0.271 4.271 15 C 0.134 3.866 16 C -0.497 4.497 17 H 0.092 0.908 18 C -0.140 4.140 19 N -0.428 5.428 20 Si 0.732 3.268 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.190 1.190 24 C -0.238 4.238 25 H 0.115 0.885 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.147 0.853 34 H 0.235 0.765 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.378 11.023 4.654 15.202 hybrid contribution 0.306 -0.680 0.389 0.841 sum -9.072 10.343 5.043 14.653 Atomic orbital electron populations 1.23010 0.79547 1.03700 1.00524 1.86314 1.20159 1.25990 1.87965 1.19543 0.92097 0.84470 0.96231 1.20951 0.99510 0.91643 1.10561 1.19590 0.93895 0.94248 0.99003 1.20744 0.99193 0.94747 1.01984 1.20743 0.92944 0.97925 1.05344 1.21284 1.00211 0.90938 0.98945 1.16885 0.86745 0.87618 1.03961 1.41727 1.54181 1.23138 1.14365 1.17600 0.95284 0.90390 0.84802 1.19863 1.14436 1.01787 0.93594 1.20266 0.98324 0.94834 0.95639 1.20901 1.10705 0.97933 0.97567 1.17303 0.87946 0.91898 0.89497 1.19488 1.13567 0.98909 1.17755 0.90756 1.25835 0.95899 0.98175 0.94082 1.69829 1.19764 1.31411 1.21846 0.86408 0.78639 0.82944 0.78857 1.19184 1.20526 1.19045 1.20767 1.08545 0.94540 0.99957 0.88471 0.93307 0.93045 0.85800 0.91413 0.91573 0.91881 0.86161 0.85279 0.76523 0.89963 0.89728 0.89368 0.91280 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.29 -5.23 10.01 -19.75 -0.20 -5.43 16 3 C 0.12 2.14 5.88 -39.08 -0.23 1.91 16 4 C -0.21 -2.91 8.69 -39.47 -0.34 -3.25 16 5 C -0.07 -0.85 5.88 -104.59 -0.62 -1.47 16 6 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 7 C -0.15 -2.01 9.69 -39.58 -0.38 -2.39 16 8 C -0.09 -1.47 9.97 -39.40 -0.39 -1.86 16 9 C 0.14 2.61 4.72 -83.54 -0.39 2.21 16 10 N -0.70 -14.51 5.20 -8.33 -0.04 -14.56 16 11 C 0.22 5.24 6.33 -83.83 -0.53 4.71 16 12 C -0.27 -6.61 9.11 -39.08 -0.36 -6.97 16 13 C -0.07 -1.73 10.01 -39.70 -0.40 -2.13 16 14 C -0.25 -6.51 9.79 -38.83 -0.38 -6.89 16 15 C 0.14 3.80 5.55 -106.85 -0.59 3.20 16 16 C -0.47 -12.85 9.06 -37.74 -0.34 -13.19 16 17 H 0.07 1.97 7.88 -52.49 -0.41 1.55 16 18 C 0.08 1.97 5.22 -17.34 -0.09 1.88 16 19 N -0.80 -21.28 10.88 55.55 0.60 -20.68 16 20 Si 0.91 19.32 29.58 -169.99 -5.03 14.29 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 C -0.21 -5.75 8.50 -38.67 -0.33 -6.08 16 25 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 26 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 27 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 28 H 0.12 1.44 6.30 -52.48 -0.33 1.11 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.40 7.72 8.83 -40.82 -0.36 7.35 16 35 H 0.08 1.91 6.61 -52.49 -0.35 1.56 16 36 H 0.08 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 38 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 39 H 0.12 3.26 6.23 -52.49 -0.33 2.94 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -30.40 329.36 -8.81 -39.21 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.08 Total: 11.82 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -4.02 Total: -29.62 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.56 Total: -35.23 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.20 Total: -5.43 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.40 -8.81 -39.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211116547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.532 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds