Wall clock time and date at job start Tue Mar 31 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38100 * 119.96152 * 2 1 4 4 C 1.38949 * 119.92423 * 179.69822 * 3 2 1 5 5 N 1.39599 * 120.08503 * 180.31534 * 4 3 2 6 6 C 1.38815 * 119.99694 * 155.52755 * 5 4 3 7 7 C 1.39605 * 119.84802 * 327.81962 * 6 5 4 8 8 C 1.36311 * 120.15361 * 179.71768 * 7 6 5 9 9 C 1.40896 * 119.84237 * 0.55214 * 8 7 6 10 10 C 1.41106 * 120.15460 * 179.69840 * 9 8 7 11 11 H 1.07997 * 119.99779 * 27.72373 * 10 9 8 12 12 C 1.39850 * 120.00085 * 207.72285 * 10 9 8 13 13 N 1.30909 * 119.99888 * 12.30322 * 12 10 9 14 14 Si 1.86794 * 120.00115 * 192.30100 * 12 10 9 15 15 H 1.48503 * 109.47075 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47369 * 119.99884 * 14 12 10 17 17 H 1.48501 * 109.47501 * 240.00342 * 14 12 10 18 18 C 1.40906 * 119.69498 * 359.71827 * 9 8 7 19 19 C 1.36317 * 119.83792 * 0.02562 * 18 9 8 20 20 C 1.38997 * 119.83481 * 0.57985 * 4 3 2 21 21 C 1.38053 * 119.91957 * 359.44126 * 20 4 3 22 22 C 1.38282 * 119.96355 * 180.02562 * 2 1 3 23 23 C 1.50703 * 119.91788 * 359.97438 * 22 2 1 24 24 O 1.42902 * 109.47165 * 180.02562 * 23 22 2 25 25 H 1.09000 * 109.47321 * 269.97481 * 1 2 3 26 26 H 1.08996 * 109.47351 * 29.98145 * 1 2 3 27 27 H 1.09002 * 109.47204 * 149.98239 * 1 2 3 28 28 H 1.08005 * 120.03605 * 359.97438 * 3 2 1 29 29 H 0.96999 * 119.99900 * 335.53956 * 5 4 3 30 30 H 1.08001 * 119.91903 * 359.97143 * 7 6 5 31 31 H 1.08007 * 120.07549 * 180.28904 * 8 7 6 32 32 H 0.97005 * 120.00044 * 179.97438 * 13 12 10 33 33 H 1.07994 * 120.08161 * 179.97438 * 18 9 8 34 34 H 1.07996 * 119.91680 * 179.97438 * 19 18 9 35 35 H 1.08002 * 120.03543 * 179.72072 * 20 4 3 36 36 H 1.08004 * 119.96093 * 180.30056 * 21 20 4 37 37 H 1.08997 * 109.47355 * 300.02623 * 23 22 2 38 38 H 1.09012 * 109.46742 * 60.02407 * 23 22 2 39 39 H 0.96698 * 113.99800 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1964 0.0000 4 6 3.5862 1.1956 0.0063 5 7 4.2867 2.4030 0.0130 6 6 5.5791 2.4528 0.5171 7 6 5.9493 1.6077 1.5648 8 6 7.2184 1.6473 2.0608 9 6 8.1541 2.5520 1.5212 10 6 9.4677 2.6029 2.0338 11 1 9.9067 1.7242 2.4826 12 6 10.2013 3.7914 1.9606 13 7 9.6027 4.9116 1.6436 14 14 12.0352 3.7803 2.3152 15 1 12.4670 2.3986 2.6467 16 1 12.7739 4.2553 1.1177 17 1 12.3231 4.6779 3.4627 18 6 7.7719 3.4059 0.4675 19 6 6.5009 3.3520 -0.0222 20 6 4.2769 -0.0106 0.0005 21 6 3.5808 -1.2028 0.0000 22 6 2.1976 -1.1980 -0.0005 23 6 1.4414 -2.5016 -0.0005 24 8 2.3678 -3.5897 -0.0005 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6566 2.1318 -0.0004 29 1 3.8703 3.2072 -0.3344 30 1 5.2296 0.9181 1.9807 31 1 7.5047 0.9896 2.8683 32 1 10.1114 5.7360 1.5932 33 1 8.4839 4.1021 0.0496 34 1 6.2065 4.0062 -0.8294 35 1 5.3569 -0.0151 0.0008 36 1 4.1169 -2.1404 0.0004 37 1 0.8146 -2.5580 0.8894 38 1 0.8146 -2.5579 -0.8906 39 1 1.9501 -4.4618 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211581409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:06 Heat of formation + Delta-G solvation = -9.517922 kcal Electronic energy + Delta-G solvation = -20845.758765 eV Core-core repulsion = 17717.269085 eV Total energy + Delta-G solvation = -3128.489680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.69296 -38.01778 -36.66673 -35.15094 -33.22798 -32.14899 -30.53201 -29.51488 -28.58349 -26.97174 -25.34043 -24.30377 -21.94193 -21.14116 -20.74012 -19.66138 -17.57278 -17.32479 -16.46662 -16.20776 -15.48588 -15.08732 -15.08152 -14.46868 -13.99060 -13.74069 -13.45343 -13.24204 -12.87945 -12.71722 -12.46801 -12.32148 -12.13428 -12.03502 -11.67998 -11.43196 -11.15928 -10.96542 -10.88069 -10.62861 -10.52534 -10.37207 -9.96169 -9.71051 -9.38796 -9.06283 -8.40152 -7.75037 -7.60547 -6.73795 -6.49650 -4.26359 1.72695 1.80313 2.76741 3.01264 3.08235 3.13594 3.18352 3.94388 4.09728 4.14828 4.20947 4.64790 4.98211 5.13550 5.25621 5.28037 5.38629 5.46719 5.61808 5.65688 5.79580 5.80837 6.06276 6.14574 6.17954 6.29400 6.42202 6.68473 6.79158 6.83874 6.96028 7.02269 7.07116 7.16887 7.30753 7.51272 7.56362 7.58365 7.74267 8.01015 8.20158 8.33770 8.45031 8.62507 8.88937 8.96786 10.22012 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032710 B = 0.003324 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.806846 B = 8422.494142 C = 9077.156138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.046 4.046 3 C -0.198 4.198 4 C 0.218 3.782 5 N -0.673 5.673 6 C 0.027 3.973 7 C -0.115 4.115 8 C -0.202 4.202 9 C 0.097 3.903 10 C -0.459 4.459 11 H 0.077 0.923 12 C 0.072 3.928 13 N -0.803 5.803 14 Si 0.910 3.090 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.275 1.275 18 C -0.139 4.139 19 C -0.127 4.127 20 C -0.181 4.181 21 C -0.054 4.054 22 C -0.162 4.162 23 C 0.131 3.869 24 O -0.569 6.569 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.395 0.605 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.279 0.721 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.790 -8.249 -3.672 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.047 4.047 3 C -0.220 4.220 4 C 0.115 3.885 5 N -0.292 5.292 6 C -0.067 4.067 7 C -0.135 4.135 8 C -0.222 4.222 9 C 0.094 3.906 10 C -0.489 4.489 11 H 0.095 0.905 12 C -0.144 4.144 13 N -0.429 5.429 14 Si 0.735 3.265 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.201 1.201 18 C -0.159 4.159 19 C -0.148 4.148 20 C -0.203 4.203 21 C -0.073 4.073 22 C -0.164 4.164 23 C 0.054 3.946 24 O -0.374 6.374 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.229 0.771 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.151 -7.512 -3.630 15.574 hybrid contribution 0.240 0.154 0.099 0.302 sum -12.912 -7.357 -3.531 15.274 Atomic orbital electron populations 1.20785 0.91882 1.02336 1.02029 1.19184 0.94978 0.91885 0.98658 1.20406 0.92160 0.97434 1.12035 1.17872 0.90542 0.86762 0.93316 1.41689 1.13997 1.07345 1.66177 1.17191 0.84475 1.05009 0.99985 1.20215 0.96762 1.00521 0.96021 1.20656 0.93205 1.05404 1.02932 1.17637 0.92684 0.90322 0.89954 1.19535 0.98036 0.97060 1.34298 0.90475 1.25884 1.00558 0.94970 0.92991 1.69833 1.37319 0.99344 1.36437 0.86234 0.82203 0.79458 0.78648 1.18469 1.19816 1.20051 1.20983 0.94810 1.02477 0.97644 1.20270 0.94049 1.00354 1.00141 1.21070 1.00747 0.90935 1.07551 1.20695 0.93217 0.97548 0.95794 1.19168 0.94131 0.92570 1.10554 1.20740 0.90050 0.84806 0.99024 1.86496 1.36437 1.16736 1.97716 0.91332 0.91698 0.91912 0.86569 0.77065 0.88736 0.88646 0.91063 0.85911 0.89209 0.85190 0.85599 0.93297 0.93295 0.77699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.60 36.01 0.35 -0.76 16 2 C -0.05 -0.63 5.88 -104.66 -0.62 -1.25 16 3 C -0.20 -2.98 9.59 -39.37 -0.38 -3.36 16 4 C 0.22 3.84 6.05 -83.78 -0.51 3.33 16 5 N -0.67 -12.39 5.42 -8.30 -0.05 -12.43 16 6 C 0.03 0.60 5.92 -83.68 -0.50 0.10 16 7 C -0.11 -2.61 7.63 -39.77 -0.30 -2.91 16 8 C -0.20 -4.95 9.74 -39.27 -0.38 -5.33 16 9 C 0.10 2.55 5.56 -106.79 -0.59 1.96 16 10 C -0.46 -12.12 9.04 -37.89 -0.34 -12.46 16 11 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 12 C 0.07 1.81 5.23 -17.34 -0.09 1.71 16 13 N -0.80 -20.66 10.84 55.54 0.60 -20.06 16 14 Si 0.91 18.70 29.58 -169.99 -5.03 13.68 16 15 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 16 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 17 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 18 C -0.14 -3.56 8.61 -39.26 -0.34 -3.90 16 19 C -0.13 -2.93 9.89 -39.76 -0.39 -3.32 16 20 C -0.18 -3.28 7.84 -39.37 -0.31 -3.59 16 21 C -0.05 -0.88 9.37 -39.62 -0.37 -1.25 16 22 C -0.16 -2.33 5.88 -104.57 -0.62 -2.95 16 23 C 0.13 1.43 6.15 36.01 0.22 1.65 16 24 O -0.57 -6.29 12.13 -35.23 -0.43 -6.72 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.06 0.52 6.63 -51.93 -0.34 0.17 16 28 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.40 6.35 8.88 -40.82 -0.36 5.99 16 30 H 0.09 2.05 6.55 -52.49 -0.34 1.70 16 31 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 32 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 33 H 0.12 3.24 6.18 -52.49 -0.32 2.92 16 34 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.13 2.57 6.28 -52.49 -0.33 2.24 16 36 H 0.13 2.01 7.00 -52.48 -0.37 1.64 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.45 7.49 -51.92 -0.39 0.06 16 39 H 0.38 2.16 9.12 45.56 0.42 2.57 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -29.12 324.09 -9.31 -38.42 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -4.13 Total: 14.56 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: -5.17 Total: -32.33 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.56 Total: -32.50 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.43 Total: -6.72 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.12 -9.31 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211581409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.906 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds