Wall clock time and date at job start Tue Mar 31 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38100 * 119.96152 * 2 1 4 4 C 1.38949 * 119.92423 * 179.69822 * 3 2 1 5 5 N 1.39599 * 120.08503 * 180.31534 * 4 3 2 6 6 C 1.38815 * 119.99694 * 155.52755 * 5 4 3 7 7 C 1.39605 * 119.84802 * 327.81962 * 6 5 4 8 8 C 1.36311 * 120.15361 * 179.71768 * 7 6 5 9 9 C 1.40896 * 119.84237 * 0.55214 * 8 7 6 10 10 C 1.41106 * 120.15460 * 179.69840 * 9 8 7 11 11 H 1.07997 * 119.99779 * 27.72373 * 10 9 8 12 12 C 1.39850 * 120.00085 * 207.72285 * 10 9 8 13 13 N 1.30909 * 119.99888 * 12.30322 * 12 10 9 14 14 Si 1.86794 * 120.00115 * 192.30100 * 12 10 9 15 15 H 1.48503 * 109.47075 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47369 * 119.99884 * 14 12 10 17 17 H 1.48501 * 109.47501 * 240.00342 * 14 12 10 18 18 C 1.40906 * 119.69498 * 359.71827 * 9 8 7 19 19 C 1.36317 * 119.83792 * 0.02562 * 18 9 8 20 20 C 1.38997 * 119.83481 * 0.57985 * 4 3 2 21 21 C 1.38053 * 119.91957 * 359.44126 * 20 4 3 22 22 C 1.38282 * 119.96355 * 180.02562 * 2 1 3 23 23 C 1.50703 * 119.91788 * 359.97438 * 22 2 1 24 24 O 1.42902 * 109.47165 * 180.02562 * 23 22 2 25 25 H 1.09000 * 109.47321 * 269.97481 * 1 2 3 26 26 H 1.08996 * 109.47351 * 29.98145 * 1 2 3 27 27 H 1.09002 * 109.47204 * 149.98239 * 1 2 3 28 28 H 1.08005 * 120.03605 * 359.97438 * 3 2 1 29 29 H 0.96999 * 119.99900 * 335.53956 * 5 4 3 30 30 H 1.08001 * 119.91903 * 359.97143 * 7 6 5 31 31 H 1.08007 * 120.07549 * 180.28904 * 8 7 6 32 32 H 0.97005 * 120.00044 * 179.97438 * 13 12 10 33 33 H 1.07994 * 120.08161 * 179.97438 * 18 9 8 34 34 H 1.07996 * 119.91680 * 179.97438 * 19 18 9 35 35 H 1.08002 * 120.03543 * 179.72072 * 20 4 3 36 36 H 1.08004 * 119.96093 * 180.30056 * 21 20 4 37 37 H 1.08997 * 109.47355 * 300.02623 * 23 22 2 38 38 H 1.09012 * 109.46742 * 60.02407 * 23 22 2 39 39 H 0.96698 * 113.99800 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1964 0.0000 4 6 3.5862 1.1956 0.0063 5 7 4.2867 2.4030 0.0130 6 6 5.5791 2.4528 0.5171 7 6 5.9493 1.6077 1.5648 8 6 7.2184 1.6473 2.0608 9 6 8.1541 2.5520 1.5212 10 6 9.4677 2.6029 2.0338 11 1 9.9067 1.7242 2.4826 12 6 10.2013 3.7914 1.9606 13 7 9.6027 4.9116 1.6436 14 14 12.0352 3.7803 2.3152 15 1 12.4670 2.3986 2.6467 16 1 12.7739 4.2553 1.1177 17 1 12.3231 4.6779 3.4627 18 6 7.7719 3.4059 0.4675 19 6 6.5009 3.3520 -0.0222 20 6 4.2769 -0.0106 0.0005 21 6 3.5808 -1.2028 0.0000 22 6 2.1976 -1.1980 -0.0005 23 6 1.4414 -2.5016 -0.0005 24 8 2.3678 -3.5897 -0.0005 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6566 2.1318 -0.0004 29 1 3.8703 3.2072 -0.3344 30 1 5.2296 0.9181 1.9807 31 1 7.5047 0.9896 2.8683 32 1 10.1114 5.7360 1.5932 33 1 8.4839 4.1021 0.0496 34 1 6.2065 4.0062 -0.8294 35 1 5.3569 -0.0151 0.0008 36 1 4.1169 -2.1404 0.0004 37 1 0.8146 -2.5580 0.8894 38 1 0.8146 -2.5579 -0.8906 39 1 1.9501 -4.4618 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211581409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:05 Heat of formation + Delta-G solvation = -26.673405 kcal Electronic energy + Delta-G solvation = -20846.502682 eV Core-core repulsion = 17717.269085 eV Total energy + Delta-G solvation = -3129.233598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01607 -39.59498 -37.76518 -36.57261 -34.95817 -33.33813 -31.99616 -31.31428 -30.19343 -28.03926 -26.73949 -25.80556 -23.28002 -22.81229 -22.38601 -21.05325 -19.26459 -18.53820 -17.86015 -17.64835 -17.05278 -16.48602 -15.93858 -15.73335 -15.67684 -15.25373 -14.69399 -14.53590 -14.27603 -14.10289 -13.95319 -13.70431 -13.52517 -13.30906 -13.07120 -12.97427 -12.75448 -12.62204 -12.31698 -11.99151 -11.76574 -11.75337 -11.50216 -11.28392 -11.09136 -10.65829 -9.62794 -9.49513 -9.32283 -8.59320 -8.10013 -6.20404 0.45058 0.54541 1.03207 1.10685 1.39237 1.51587 1.53940 2.23013 2.65355 2.72903 2.94573 3.46065 3.71903 4.01861 4.07744 4.21299 4.35031 4.37039 4.41688 4.50795 4.62401 4.66524 4.76291 4.91971 4.93360 5.03066 5.05231 5.15347 5.18346 5.30708 5.34291 5.49550 5.55424 5.65730 5.70815 5.80049 5.88039 6.07332 6.12892 6.30629 6.57924 6.74983 6.95683 6.96518 7.03032 7.11039 8.38856 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032710 B = 0.003324 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.806846 B = 8422.494142 C = 9077.156138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.045 4.045 3 C -0.192 4.192 4 C 0.193 3.807 5 N -0.673 5.673 6 C 0.052 3.948 7 C -0.119 4.119 8 C -0.214 4.214 9 C 0.064 3.936 10 C -0.498 4.498 11 H 0.072 0.928 12 C 0.032 3.968 13 N -0.835 5.835 14 Si 0.984 3.016 15 H -0.260 1.260 16 H -0.264 1.264 17 H -0.267 1.267 18 C -0.156 4.156 19 C -0.135 4.135 20 C -0.202 4.202 21 C -0.068 4.068 22 C -0.160 4.160 23 C 0.130 3.870 24 O -0.593 6.593 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.139 0.861 29 H 0.408 0.592 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.286 0.714 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.590 -9.064 -4.062 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.045 4.045 3 C -0.214 4.214 4 C 0.092 3.908 5 N -0.296 5.296 6 C -0.044 4.044 7 C -0.139 4.139 8 C -0.234 4.234 9 C 0.061 3.939 10 C -0.528 4.528 11 H 0.090 0.910 12 C -0.181 4.181 13 N -0.462 5.462 14 Si 0.805 3.195 15 H -0.184 1.184 16 H -0.189 1.189 17 H -0.192 1.192 18 C -0.176 4.176 19 C -0.156 4.156 20 C -0.224 4.224 21 C -0.087 4.087 22 C -0.162 4.162 23 C 0.053 3.947 24 O -0.401 6.401 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.156 0.844 29 H 0.244 0.756 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.140 0.860 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -16.019 -8.368 -4.035 18.518 hybrid contribution 0.800 0.231 0.152 0.846 sum -15.220 -8.138 -3.882 17.690 Atomic orbital electron populations 1.20879 0.88425 1.04101 1.03413 1.19682 0.97391 0.90865 0.96597 1.20740 0.91016 0.99234 1.10396 1.18038 0.91668 0.85885 0.95181 1.41530 1.12747 1.08511 1.66799 1.17232 0.85729 1.02966 0.98427 1.20305 0.96281 1.01011 0.96345 1.20804 0.93863 1.05402 1.03295 1.17928 0.93487 0.91530 0.90954 1.19737 0.98979 0.97829 1.36298 0.90953 1.26702 1.05005 0.94074 0.92362 1.69886 1.39125 0.99977 1.37242 0.85134 0.76175 0.79419 0.78802 1.18387 1.18908 1.19152 1.20938 0.95767 1.02739 0.98161 1.20475 0.93358 1.01100 1.00652 1.20954 0.99551 0.92339 1.09563 1.20762 0.94585 0.96692 0.96632 1.19707 0.93457 0.95025 1.07971 1.20843 0.89628 0.83022 1.01172 1.86443 1.37618 1.18259 1.97830 0.89924 0.90414 0.89828 0.84362 0.75604 0.87821 0.88401 0.90352 0.87396 0.86894 0.88075 0.85991 0.91103 0.90767 0.75024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.60 71.24 0.68 -0.93 16 2 C -0.04 -1.06 5.88 -19.89 -0.12 -1.18 16 3 C -0.19 -5.28 9.59 22.41 0.21 -5.07 16 4 C 0.19 6.64 6.05 38.26 0.23 6.87 16 5 N -0.67 -24.40 5.42 -180.18 -0.98 -25.38 16 6 C 0.05 2.30 5.92 38.70 0.23 2.53 16 7 C -0.12 -5.56 7.63 22.15 0.17 -5.40 16 8 C -0.21 -10.99 9.74 22.47 0.22 -10.77 16 9 C 0.06 3.53 5.56 -21.27 -0.12 3.41 16 10 C -0.50 -27.63 9.04 23.36 0.21 -27.42 16 11 H 0.07 3.90 7.87 -2.91 -0.02 3.88 16 12 C 0.03 1.63 5.23 85.22 0.45 2.07 16 13 N -0.84 -44.42 10.84 21.81 0.24 -44.18 16 14 Si 0.98 39.24 29.58 68.60 2.03 41.27 16 15 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 16 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 17 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 18 C -0.16 -8.34 8.61 22.48 0.19 -8.14 16 19 C -0.14 -6.33 9.89 22.15 0.22 -6.11 16 20 C -0.20 -7.42 7.84 22.41 0.18 -7.25 16 21 C -0.07 -2.19 9.37 22.25 0.21 -1.99 16 22 C -0.16 -4.17 5.88 -19.83 -0.12 -4.28 16 23 C 0.13 2.33 6.15 71.24 0.44 2.77 16 24 O -0.59 -11.53 12.13 -148.98 -1.81 -13.34 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 27 H 0.08 0.90 6.63 -2.39 -0.02 0.88 16 28 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.41 12.56 8.88 -92.71 -0.82 11.73 16 30 H 0.10 4.60 6.55 -2.91 -0.02 4.58 16 31 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 32 H 0.29 13.73 8.30 -92.70 -0.77 12.96 16 33 H 0.11 6.01 6.18 -2.91 -0.02 5.99 16 34 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 35 H 0.10 4.23 6.28 -2.91 -0.02 4.21 16 36 H 0.12 3.93 7.00 -2.91 -0.02 3.91 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.99 7.49 -2.38 -0.02 0.98 16 39 H 0.40 3.37 9.12 -74.06 -0.68 2.69 16 Total: -1.00 -65.92 324.09 2.36 -63.56 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -0.41 Total: 38.95 kcal Atomic # 6 Polarization: -64.16 SS G_CDS: 3.29 Total: -60.87 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -0.74 Total: -69.56 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -1.81 Total: -13.34 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -65.92 2.36 -63.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211581409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.885 kcal (2) G-P(sol) polarization free energy of solvation -65.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds