Wall clock time and date at job start Tue Mar 31 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38112 * 119.95633 * 2 1 4 4 C 1.38951 * 119.91984 * 180.02562 * 3 2 1 5 5 N 1.39585 * 120.08163 * 180.02562 * 4 3 2 6 6 C 1.38683 * 120.00355 * 185.77201 * 5 4 3 7 7 C 1.38809 * 120.29994 * 254.54064 * 6 5 4 8 8 C 1.38117 * 120.02474 * 180.25249 * 7 6 5 9 9 C 1.38931 * 120.62978 * 359.74353 * 8 7 6 10 10 C 1.36429 * 120.60815 * 359.97399 * 9 8 7 11 11 C 1.40736 * 119.95234 * 0.02562 * 10 9 8 12 12 C 1.41010 * 120.30975 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00094 * 205.94636 * 12 11 10 14 14 C 1.39910 * 120.00111 * 25.94702 * 12 11 10 15 15 N 1.30886 * 119.99797 * 13.63451 * 14 12 11 16 16 Si 1.86793 * 120.00274 * 193.63318 * 14 12 11 17 17 H 1.48502 * 109.47333 * 265.02457 * 16 14 12 18 18 H 1.48499 * 109.47261 * 25.02331 * 16 14 12 19 19 H 1.48504 * 109.47309 * 145.02433 * 16 14 12 20 20 C 1.38997 * 119.83665 * 0.27536 * 4 3 2 21 21 C 1.38063 * 119.92114 * 359.47168 * 20 4 3 22 22 C 1.38280 * 119.96361 * 180.02562 * 2 1 3 23 23 C 1.50694 * 119.92153 * 0.02562 * 22 2 1 24 24 O 1.42904 * 109.47499 * 179.97438 * 23 22 2 25 25 H 1.08999 * 109.47325 * 89.99892 * 1 2 3 26 26 H 1.09006 * 109.46380 * 209.99583 * 1 2 3 27 27 H 1.08998 * 109.47399 * 329.99439 * 1 2 3 28 28 H 1.07994 * 120.03855 * 0.02562 * 3 2 1 29 29 H 0.97005 * 119.99907 * 5.77418 * 5 4 3 30 30 H 1.08003 * 119.98831 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.68702 * 179.76188 * 8 7 6 32 32 H 1.08004 * 119.69527 * 179.97438 * 9 8 7 33 33 H 1.07999 * 120.02122 * 180.02562 * 10 9 8 34 34 H 0.96996 * 120.00444 * 179.97438 * 15 14 12 35 35 H 1.08008 * 120.03708 * 179.72630 * 20 4 3 36 36 H 1.08007 * 119.95717 * 180.22940 * 21 20 4 37 37 H 1.08997 * 109.47278 * 300.00613 * 23 22 2 38 38 H 1.08999 * 109.47026 * 60.00390 * 23 22 2 39 39 H 0.96697 * 113.99734 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1966 0.0000 4 6 3.5861 1.1957 -0.0005 5 7 4.2866 2.4031 0.0000 6 6 5.6681 2.4035 -0.1213 7 6 6.4680 2.6636 0.9829 8 6 7.8432 2.6677 0.8545 9 6 8.4403 2.4078 -0.3728 10 6 7.6790 2.1433 -1.4735 11 6 6.2754 2.1327 -1.3711 12 6 5.4812 1.8607 -2.5041 13 1 4.4729 2.2434 -2.5613 14 6 5.9994 1.0952 -3.5543 15 7 7.1028 0.4122 -3.3837 16 14 5.1167 1.0478 -5.1998 17 1 4.2221 -0.1366 -5.2477 18 1 4.3105 2.2839 -5.3649 19 1 6.1155 0.9583 -6.2951 20 6 4.2769 -0.0104 -0.0069 21 6 3.5809 -1.2027 -0.0016 22 6 2.1976 -1.1980 -0.0005 23 6 1.4415 -2.5015 -0.0017 24 8 2.3679 -3.5896 -0.0027 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6566 2.1318 0.0004 29 1 3.8070 3.2420 0.0853 30 1 6.0148 2.8674 1.9418 31 1 8.4603 2.8746 1.7163 32 1 9.5171 2.4153 -0.4561 33 1 8.1531 1.9421 -2.4228 34 1 7.4620 -0.1189 -4.1116 35 1 5.3570 -0.0149 -0.0118 36 1 4.1171 -2.1403 -0.0027 37 1 0.8144 -2.5586 0.8879 38 1 0.8152 -2.5574 -0.8920 39 1 1.9502 -4.4617 -0.0039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211585291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:09 Heat of formation + Delta-G solvation = -8.651959 kcal Electronic energy + Delta-G solvation = -21813.211275 eV Core-core repulsion = 18684.759146 eV Total energy + Delta-G solvation = -3128.452129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.28402 -37.86039 -36.39551 -34.53331 -33.68277 -31.78823 -30.28396 -29.57644 -27.91711 -26.58381 -25.26751 -24.37262 -21.59075 -20.95768 -20.80398 -19.22543 -17.35840 -17.25508 -16.23348 -15.96816 -15.24336 -14.92755 -14.81876 -14.27501 -13.88462 -13.75507 -13.24737 -13.14164 -12.75096 -12.54099 -12.40838 -12.06835 -11.86965 -11.71295 -11.60444 -11.18102 -11.08536 -10.88797 -10.58605 -10.45217 -10.30817 -10.15135 -9.87857 -9.64161 -9.22599 -8.98014 -8.00840 -7.47641 -7.44427 -6.81363 -6.39637 -4.38909 2.16327 2.28670 2.72890 2.92230 3.06401 3.10622 3.21634 3.92430 4.46211 4.47359 4.59512 4.63330 5.26955 5.41957 5.51631 5.59170 5.61639 5.65367 5.77852 5.87448 6.04800 6.17160 6.20103 6.37915 6.42787 6.55211 6.64569 6.79469 7.02900 7.10148 7.15542 7.25927 7.30228 7.33984 7.41886 7.65918 7.77686 7.84141 7.91707 8.05812 8.21964 8.40753 8.58727 8.74310 8.83968 9.06350 10.14615 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.006648 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.151038 B = 4211.033256 C = 5155.282956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.047 4.047 3 C -0.212 4.212 4 C 0.246 3.754 5 N -0.666 5.666 6 C -0.001 4.001 7 C -0.088 4.088 8 C -0.240 4.240 9 C -0.105 4.105 10 C -0.155 4.155 11 C 0.113 3.887 12 C -0.436 4.436 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.789 5.789 16 Si 0.905 3.095 17 H -0.269 1.269 18 H -0.261 1.261 19 H -0.275 1.275 20 C -0.164 4.164 21 C -0.051 4.051 22 C -0.174 4.174 23 C 0.134 3.866 24 O -0.568 6.568 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.388 0.612 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.281 0.719 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.339 -2.888 3.509 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.048 4.048 3 C -0.235 4.235 4 C 0.141 3.859 5 N -0.286 5.286 6 C -0.095 4.095 7 C -0.108 4.108 8 C -0.260 4.260 9 C -0.123 4.123 10 C -0.175 4.175 11 C 0.108 3.892 12 C -0.465 4.465 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.414 5.414 16 Si 0.730 3.270 17 H -0.194 1.194 18 H -0.185 1.185 19 H -0.200 1.200 20 C -0.186 4.186 21 C -0.070 4.070 22 C -0.176 4.176 23 C 0.057 3.943 24 O -0.372 6.372 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.222 0.778 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.140 0.860 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -8.559 -2.566 3.355 9.545 hybrid contribution -0.837 -0.223 -0.819 1.192 sum -9.397 -2.788 2.536 10.124 Atomic orbital electron populations 1.20749 0.92337 1.01935 1.01722 1.19065 0.94563 0.91973 0.99185 1.20205 0.92090 0.97097 1.14136 1.17919 0.90223 0.87021 0.90733 1.41214 1.04459 1.04201 1.78719 1.17310 0.81567 1.17803 0.92800 1.20727 0.93610 1.00589 0.95848 1.20206 0.93706 1.15032 0.97025 1.20481 0.97620 1.00467 0.93775 1.21091 0.93703 1.04480 0.98204 1.17808 0.92158 0.88459 0.90729 1.19395 1.00225 1.27134 0.99712 0.90502 1.25904 0.94537 0.93416 1.00338 1.69817 1.18399 1.20130 1.33087 0.86326 0.79956 0.79827 0.80911 1.19390 1.18527 1.20045 1.20777 1.00471 0.90602 1.06790 1.20623 0.93085 0.97504 0.95809 1.19042 0.94105 0.92280 1.12154 1.20708 0.90012 0.84998 0.98590 1.86528 1.36425 1.16577 1.97701 0.91634 0.92197 0.91980 0.87070 0.77785 0.89324 0.89423 0.89461 0.85983 0.90841 0.85637 0.86152 0.93673 0.93657 0.78082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.60 36.01 0.35 -1.03 16 2 C -0.05 -0.79 5.88 -104.65 -0.62 -1.40 16 3 C -0.21 -3.85 9.55 -39.36 -0.38 -4.23 16 4 C 0.25 5.12 6.08 -83.78 -0.51 4.61 16 5 N -0.67 -13.84 4.72 -8.04 -0.04 -13.88 16 6 C 0.00 -0.02 4.62 -83.28 -0.38 -0.41 16 7 C -0.09 -1.95 9.96 -39.41 -0.39 -2.34 16 8 C -0.24 -5.29 10.03 -39.37 -0.40 -5.68 16 9 C -0.10 -2.42 9.96 -39.98 -0.40 -2.81 16 10 C -0.15 -3.92 8.62 -39.29 -0.34 -4.26 16 11 C 0.11 2.88 5.03 -106.63 -0.54 2.34 16 12 C -0.44 -11.26 8.00 -37.91 -0.30 -11.57 16 13 H 0.08 2.00 7.59 -52.49 -0.40 1.60 16 14 C 0.08 1.90 5.22 -17.33 -0.09 1.81 16 15 N -0.79 -20.11 10.81 55.55 0.60 -19.51 16 16 Si 0.91 19.13 29.58 -169.99 -5.03 14.10 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 C -0.16 -3.67 8.93 -39.36 -0.35 -4.02 16 21 C -0.05 -1.05 9.37 -39.61 -0.37 -1.42 16 22 C -0.17 -3.09 5.88 -104.58 -0.62 -3.71 16 23 C 0.13 1.87 6.15 36.00 0.22 2.09 16 24 O -0.57 -8.00 12.13 -35.23 -0.43 -8.42 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.64 6.63 -51.93 -0.34 0.30 16 27 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 28 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.39 7.07 8.84 -40.82 -0.36 6.71 16 30 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.12 3.19 6.10 -52.49 -0.32 2.87 16 34 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 35 H 0.13 3.15 6.72 -52.48 -0.35 2.80 16 36 H 0.12 2.44 7.00 -52.48 -0.37 2.07 16 37 H 0.05 0.54 7.48 -51.93 -0.39 0.15 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.37 3.14 9.12 45.56 0.42 3.55 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -28.75 325.82 -9.30 -38.05 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -4.21 Total: 16.78 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: -5.11 Total: -32.03 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.56 Total: -33.39 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.43 Total: -8.42 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.75 -9.30 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211585291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.400 kcal (2) G-P(sol) polarization free energy of solvation -28.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds