Wall clock time and date at job start Tue Mar 31 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38112 * 119.95633 * 2 1 4 4 C 1.38951 * 119.91984 * 180.02562 * 3 2 1 5 5 N 1.39585 * 120.08163 * 180.02562 * 4 3 2 6 6 C 1.38683 * 120.00355 * 185.77201 * 5 4 3 7 7 C 1.38809 * 120.29994 * 254.54064 * 6 5 4 8 8 C 1.38117 * 120.02474 * 180.25249 * 7 6 5 9 9 C 1.38931 * 120.62978 * 359.74353 * 8 7 6 10 10 C 1.36429 * 120.60815 * 359.97399 * 9 8 7 11 11 C 1.40736 * 119.95234 * 0.02562 * 10 9 8 12 12 C 1.41010 * 120.30975 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00094 * 205.94636 * 12 11 10 14 14 C 1.39910 * 120.00111 * 25.94702 * 12 11 10 15 15 N 1.30886 * 119.99797 * 13.63451 * 14 12 11 16 16 Si 1.86793 * 120.00274 * 193.63318 * 14 12 11 17 17 H 1.48502 * 109.47333 * 265.02457 * 16 14 12 18 18 H 1.48499 * 109.47261 * 25.02331 * 16 14 12 19 19 H 1.48504 * 109.47309 * 145.02433 * 16 14 12 20 20 C 1.38997 * 119.83665 * 0.27536 * 4 3 2 21 21 C 1.38063 * 119.92114 * 359.47168 * 20 4 3 22 22 C 1.38280 * 119.96361 * 180.02562 * 2 1 3 23 23 C 1.50694 * 119.92153 * 0.02562 * 22 2 1 24 24 O 1.42904 * 109.47499 * 179.97438 * 23 22 2 25 25 H 1.08999 * 109.47325 * 89.99892 * 1 2 3 26 26 H 1.09006 * 109.46380 * 209.99583 * 1 2 3 27 27 H 1.08998 * 109.47399 * 329.99439 * 1 2 3 28 28 H 1.07994 * 120.03855 * 0.02562 * 3 2 1 29 29 H 0.97005 * 119.99907 * 5.77418 * 5 4 3 30 30 H 1.08003 * 119.98831 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.68702 * 179.76188 * 8 7 6 32 32 H 1.08004 * 119.69527 * 179.97438 * 9 8 7 33 33 H 1.07999 * 120.02122 * 180.02562 * 10 9 8 34 34 H 0.96996 * 120.00444 * 179.97438 * 15 14 12 35 35 H 1.08008 * 120.03708 * 179.72630 * 20 4 3 36 36 H 1.08007 * 119.95717 * 180.22940 * 21 20 4 37 37 H 1.08997 * 109.47278 * 300.00613 * 23 22 2 38 38 H 1.08999 * 109.47026 * 60.00390 * 23 22 2 39 39 H 0.96697 * 113.99734 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1966 0.0000 4 6 3.5861 1.1957 -0.0005 5 7 4.2866 2.4031 0.0000 6 6 5.6681 2.4035 -0.1213 7 6 6.4680 2.6636 0.9829 8 6 7.8432 2.6677 0.8545 9 6 8.4403 2.4078 -0.3728 10 6 7.6790 2.1433 -1.4735 11 6 6.2754 2.1327 -1.3711 12 6 5.4812 1.8607 -2.5041 13 1 4.4729 2.2434 -2.5613 14 6 5.9994 1.0952 -3.5543 15 7 7.1028 0.4122 -3.3837 16 14 5.1167 1.0478 -5.1998 17 1 4.2221 -0.1366 -5.2477 18 1 4.3105 2.2839 -5.3649 19 1 6.1155 0.9583 -6.2951 20 6 4.2769 -0.0104 -0.0069 21 6 3.5809 -1.2027 -0.0016 22 6 2.1976 -1.1980 -0.0005 23 6 1.4415 -2.5015 -0.0017 24 8 2.3679 -3.5896 -0.0027 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6566 2.1318 0.0004 29 1 3.8070 3.2420 0.0853 30 1 6.0148 2.8674 1.9418 31 1 8.4603 2.8746 1.7163 32 1 9.5171 2.4153 -0.4561 33 1 8.1531 1.9421 -2.4228 34 1 7.4620 -0.1189 -4.1116 35 1 5.3570 -0.0149 -0.0118 36 1 4.1171 -2.1403 -0.0027 37 1 0.8144 -2.5586 0.8879 38 1 0.8152 -2.5574 -0.8920 39 1 1.9502 -4.4617 -0.0039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211585291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:08 Heat of formation + Delta-G solvation = -25.425631 kcal Electronic energy + Delta-G solvation = -21813.938636 eV Core-core repulsion = 18684.759146 eV Total energy + Delta-G solvation = -3129.179490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80456 -39.50236 -37.62310 -36.05839 -35.53217 -33.17930 -31.82053 -31.42431 -29.54145 -27.86831 -27.01608 -25.80228 -23.12558 -22.76102 -22.40477 -20.79351 -19.17592 -18.55035 -17.73804 -17.60111 -16.96095 -16.38526 -15.96456 -15.88623 -15.53676 -15.36812 -14.67038 -14.47636 -14.27312 -14.20528 -13.86533 -13.39439 -13.37687 -13.14009 -13.03074 -12.92143 -12.80946 -12.63733 -12.19531 -11.85806 -11.80819 -11.67423 -11.42643 -11.20752 -11.08742 -10.47521 -9.47830 -9.31844 -9.28193 -8.64681 -7.98914 -6.31752 0.67763 0.75822 0.95540 1.09214 1.32076 1.43283 1.48714 2.16812 2.73364 2.91599 3.09111 3.50589 3.71125 4.10860 4.16404 4.31252 4.43921 4.44859 4.58532 4.59228 4.67526 4.70124 4.82027 4.93599 4.95250 5.09435 5.13347 5.18452 5.30101 5.36347 5.44022 5.58267 5.68200 5.71096 5.87776 5.90665 6.05910 6.17644 6.22695 6.35911 6.57010 6.85568 6.91976 7.03213 7.06351 7.31835 8.31723 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.006648 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.151038 B = 4211.033256 C = 5155.282956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.043 4.043 3 C -0.211 4.211 4 C 0.227 3.773 5 N -0.667 5.667 6 C 0.005 3.995 7 C -0.097 4.097 8 C -0.235 4.235 9 C -0.111 4.111 10 C -0.181 4.181 11 C 0.085 3.915 12 C -0.459 4.459 13 H 0.067 0.933 14 C 0.036 3.964 15 N -0.821 5.821 16 Si 0.969 3.031 17 H -0.270 1.270 18 H -0.258 1.258 19 H -0.263 1.263 20 C -0.194 4.194 21 C -0.069 4.069 22 C -0.177 4.177 23 C 0.135 3.865 24 O -0.594 6.594 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.137 0.863 29 H 0.400 0.600 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.285 0.715 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.208 -3.019 4.100 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.043 4.043 3 C -0.234 4.234 4 C 0.123 3.877 5 N -0.290 5.290 6 C -0.089 4.089 7 C -0.117 4.117 8 C -0.254 4.254 9 C -0.129 4.129 10 C -0.201 4.201 11 C 0.081 3.919 12 C -0.488 4.488 13 H 0.085 0.915 14 C -0.179 4.179 15 N -0.448 5.448 16 Si 0.790 3.210 17 H -0.196 1.196 18 H -0.182 1.182 19 H -0.187 1.187 20 C -0.216 4.216 21 C -0.088 4.088 22 C -0.179 4.179 23 C 0.058 3.942 24 O -0.402 6.402 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.155 0.845 29 H 0.236 0.764 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -11.445 -2.710 3.961 12.411 hybrid contribution 0.024 -0.236 -0.849 0.882 sum -11.421 -2.946 3.111 12.199 Atomic orbital electron populations 1.20842 0.88408 1.04013 1.03159 1.19626 0.97284 0.90826 0.96611 1.20585 0.90880 0.99067 1.12843 1.18054 0.91464 0.86208 0.91950 1.41115 1.03584 1.04908 1.79395 1.17473 0.83045 1.15996 0.92413 1.21044 0.93922 1.00294 0.96461 1.20592 0.94096 1.13225 0.97514 1.20751 0.98765 0.99818 0.93597 1.21083 0.94149 1.06455 0.98451 1.18125 0.92591 0.89322 0.91861 1.19420 0.99949 1.28482 1.00982 0.91522 1.26635 0.95258 0.92757 1.03245 1.69880 1.19791 1.20973 1.34124 0.85383 0.78951 0.79513 0.77132 1.19572 1.18203 1.18733 1.20529 0.98488 0.92508 1.10110 1.20648 0.94793 0.96309 0.97013 1.19578 0.93117 0.95094 1.10114 1.20799 0.89517 0.83014 1.00885 1.86477 1.37716 1.18197 1.97825 0.90274 0.89888 0.90290 0.84489 0.76406 0.87076 0.86342 0.87259 0.87725 0.90399 0.89995 0.87259 0.90670 0.91571 0.75256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.60 71.24 0.68 -1.46 16 2 C -0.04 -1.31 5.88 -19.88 -0.12 -1.43 16 3 C -0.21 -7.31 9.55 22.41 0.21 -7.10 16 4 C 0.23 9.59 6.08 38.26 0.23 9.82 16 5 N -0.67 -28.21 4.72 -179.36 -0.85 -29.05 16 6 C 0.01 0.24 4.62 39.02 0.18 0.42 16 7 C -0.10 -4.33 9.96 22.38 0.22 -4.10 16 8 C -0.23 -10.20 10.03 22.41 0.22 -9.98 16 9 C -0.11 -5.18 9.96 22.01 0.22 -4.96 16 10 C -0.18 -9.61 8.62 22.46 0.19 -9.41 16 11 C 0.08 4.55 5.03 -21.17 -0.11 4.45 16 12 C -0.46 -24.84 8.00 23.35 0.19 -24.65 16 13 H 0.07 3.61 7.59 -2.91 -0.02 3.59 16 14 C 0.04 1.85 5.22 85.24 0.44 2.30 16 15 N -0.82 -43.96 10.81 21.82 0.24 -43.73 16 16 Si 0.97 40.20 29.58 68.60 2.03 42.23 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 20 C -0.19 -9.11 8.93 22.41 0.20 -8.91 16 21 C -0.07 -2.89 9.37 22.25 0.21 -2.68 16 22 C -0.18 -6.02 5.88 -19.84 -0.12 -6.13 16 23 C 0.13 3.32 6.15 71.23 0.44 3.75 16 24 O -0.59 -15.61 12.13 -148.98 -1.81 -17.41 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 1.31 6.63 -2.38 -0.02 1.29 16 27 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 28 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.40 14.53 8.84 -92.70 -0.82 13.71 16 30 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 32 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.10 5.82 6.10 -2.91 -0.02 5.80 16 34 H 0.29 13.96 8.30 -92.71 -0.77 13.20 16 35 H 0.08 4.48 6.72 -2.91 -0.02 4.46 16 36 H 0.11 4.68 7.00 -2.91 -0.02 4.66 16 37 H 0.08 1.43 7.48 -2.39 -0.02 1.41 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.40 5.69 9.12 -74.06 -0.68 5.01 16 Total: -1.00 -66.00 325.82 2.51 -63.49 By element: Atomic # 1 Polarization: 44.97 SS G_CDS: -0.41 Total: 44.57 kcal Atomic # 6 Polarization: -63.40 SS G_CDS: 3.31 Total: -60.09 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -0.61 Total: -72.78 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -1.81 Total: -17.41 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -66.00 2.51 -63.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211585291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.068 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds