Wall clock time and date at job start Tue Mar 31 2020 05:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 117.00267 * 2 1 4 4 C 1.38828 * 120.01216 * 0.02562 * 3 2 1 5 5 C 1.38193 * 120.10344 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.93631 * 180.02562 * 5 4 3 7 7 C 1.38148 * 120.12986 * 359.72013 * 5 4 3 8 8 C 1.38981 * 120.02910 * 0.55492 * 7 5 4 9 9 N 1.39589 * 120.05372 * 179.71941 * 8 7 5 10 10 C 1.38817 * 120.00411 * 148.90764 * 9 8 7 11 11 C 1.39602 * 119.84332 * 326.87121 * 10 9 8 12 12 C 1.36315 * 120.15800 * 180.23076 * 11 10 9 13 13 C 1.40905 * 119.83654 * 359.51530 * 12 11 10 14 14 C 1.41104 * 120.15177 * 180.23552 * 13 12 11 15 15 H 1.07992 * 120.00247 * 207.30990 * 14 13 12 16 16 C 1.39849 * 120.00086 * 27.30617 * 14 13 12 17 17 N 1.30917 * 119.99696 * 15.53771 * 16 14 13 18 18 Si 1.86797 * 120.00209 * 195.53110 * 16 14 13 19 19 H 1.48503 * 109.46872 * 60.00152 * 18 16 14 20 20 H 1.48504 * 109.47452 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47329 * 300.00240 * 18 16 14 22 22 C 1.40897 * 119.69581 * 0.47883 * 13 12 11 23 23 C 1.36318 * 119.83724 * 359.75365 * 22 13 12 24 24 C 1.38546 * 120.01436 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.47042 * 59.99811 * 1 2 3 26 26 H 1.08996 * 109.47182 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46973 * 300.00338 * 1 2 3 28 28 H 1.07997 * 119.95506 * 359.95610 * 4 3 2 29 29 H 1.09001 * 109.47501 * 89.99933 * 6 5 4 30 30 H 1.09004 * 109.47158 * 210.00129 * 6 5 4 31 31 H 1.08996 * 109.47128 * 329.99599 * 6 5 4 32 32 H 1.07996 * 119.98489 * 180.27696 * 7 5 4 33 33 H 0.96998 * 119.99716 * 328.91639 * 9 8 7 34 34 H 1.07998 * 119.92532 * 359.94901 * 11 10 9 35 35 H 1.07997 * 120.08213 * 179.74847 * 12 11 10 36 36 H 0.97004 * 119.99381 * 180.02562 * 17 16 14 37 37 H 1.08003 * 120.08367 * 179.73036 * 22 13 12 38 38 H 1.07998 * 119.92012 * 179.97438 * 23 22 13 39 39 H 1.08003 * 120.07176 * 0.03905 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9157 3.6076 0.0011 6 6 1.0916 4.8693 0.0022 7 6 3.2950 3.6852 0.0069 8 6 4.0570 2.5229 0.0006 9 7 5.4507 2.6007 0.0006 10 6 6.2014 1.6084 0.6160 11 6 5.7057 0.9661 1.7521 12 6 6.4395 -0.0060 2.3642 13 6 7.6966 -0.3691 1.8416 14 6 8.4596 -1.3780 2.4671 15 1 9.5362 -1.3709 2.3835 16 6 7.8215 -2.3870 3.1954 17 7 6.5347 -2.5822 3.0544 18 14 8.8053 -3.4564 4.3693 19 1 9.4303 -2.6024 5.4111 20 1 7.9028 -4.4439 5.0139 21 1 9.8652 -4.1733 3.6156 22 6 8.1906 0.2832 0.6947 23 6 7.4481 1.2569 0.0955 24 6 3.4296 1.2836 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.2118 2.3183 0.0002 29 1 0.8933 5.1729 1.0302 30 1 1.6378 5.6605 -0.5113 31 1 0.1476 4.6871 -0.5114 32 1 3.7813 4.6494 0.0118 33 1 5.8947 3.3483 -0.4294 34 1 4.7405 1.2432 2.1496 35 1 6.0566 -0.4992 3.2454 36 1 6.0921 -3.2819 3.5599 37 1 9.1554 0.0129 0.2914 38 1 7.8257 1.7581 -0.7835 39 1 4.0191 0.3787 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211726554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:35 Heat of formation + Delta-G solvation = 4.488113 kcal Electronic energy + Delta-G solvation = -21162.248662 eV Core-core repulsion = 18034.366329 eV Total energy + Delta-G solvation = -3127.882333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.97330 -38.38100 -37.16414 -35.07858 -33.19979 -31.60588 -29.70556 -29.54796 -27.90310 -27.70221 -26.20107 -24.61910 -21.89670 -21.40342 -20.90980 -19.80859 -17.54296 -17.30577 -16.65180 -15.73988 -15.56055 -15.44355 -15.23160 -14.94695 -13.95827 -13.73036 -13.50431 -13.20976 -12.89153 -12.75952 -12.29978 -12.23368 -12.03588 -11.90433 -11.71004 -11.60337 -11.38333 -11.10628 -10.98611 -10.83476 -10.59100 -10.47180 -9.88907 -9.73438 -9.35349 -9.04757 -7.94755 -7.78342 -7.56722 -6.74963 -6.53279 -4.23635 1.74294 1.83324 2.81029 3.04314 3.08921 3.11249 3.21915 3.48160 3.95737 4.12543 4.21626 4.66552 4.94432 5.18939 5.23590 5.27014 5.37139 5.54992 5.58597 5.62859 5.68499 5.83170 5.84870 5.95418 6.17091 6.25229 6.29280 6.64004 6.74134 6.83489 6.88471 6.91376 7.06777 7.11701 7.25228 7.47581 7.58774 7.75351 7.78755 8.03712 8.18004 8.35638 8.49371 8.64432 8.90488 8.99329 10.23551 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.004246 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.785947 B = 6593.175936 C = 7579.402904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.315 6.315 3 C 0.161 3.839 4 C -0.263 4.263 5 C -0.021 4.021 6 C -0.110 4.110 7 C -0.224 4.224 8 C 0.248 3.752 9 N -0.674 5.674 10 C 0.025 3.975 11 C -0.117 4.117 12 C -0.140 4.140 13 C 0.100 3.900 14 C -0.462 4.462 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.796 5.796 18 Si 0.908 3.092 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.206 4.206 23 C -0.117 4.117 24 C -0.204 4.204 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.118 0.882 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.396 0.604 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.281 0.719 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.280 8.263 -4.168 13.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.229 6.229 3 C 0.115 3.885 4 C -0.284 4.284 5 C -0.022 4.022 6 C -0.167 4.167 7 C -0.246 4.246 8 C 0.145 3.855 9 N -0.295 5.295 10 C -0.069 4.069 11 C -0.138 4.138 12 C -0.160 4.160 13 C 0.097 3.903 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.143 4.143 17 N -0.421 5.421 18 Si 0.733 3.267 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.226 4.226 23 C -0.138 4.138 24 C -0.226 4.226 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.231 0.769 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.338 7.770 -4.011 13.540 hybrid contribution 0.282 -0.234 0.346 0.504 sum -10.056 7.536 -3.665 13.090 Atomic orbital electron populations 1.22972 0.79111 1.03394 1.00971 1.86114 1.20763 1.27328 1.88645 1.18682 0.91712 0.83687 0.94418 1.20744 0.99065 0.91755 1.16813 1.19279 0.93107 0.94126 0.95644 1.20756 0.99022 0.94861 1.02083 1.20485 0.93008 0.96866 1.14248 1.17403 0.83920 0.92234 0.91938 1.41581 1.01540 1.26010 1.60395 1.17171 0.94133 0.98336 0.97227 1.20349 0.99232 0.99227 0.94943 1.20932 0.96529 0.97558 1.01009 1.17610 0.91994 0.90961 0.89731 1.19454 0.94768 1.07400 1.27603 0.90546 1.25883 0.94999 0.97513 0.95878 1.69846 1.10311 1.27979 1.34008 0.86374 0.80226 0.79426 0.80708 1.18897 1.20374 1.19081 1.20593 1.00928 1.02268 0.98830 1.20078 0.95311 0.99377 0.99018 1.20175 0.91402 0.98257 1.12798 0.93024 0.88670 0.92929 0.86387 0.91292 0.91689 0.91913 0.86524 0.76914 0.89003 0.86340 0.90840 0.88701 0.89234 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.30 10.49 -19.42 -0.20 -5.50 16 3 C 0.16 2.81 6.68 -39.25 -0.26 2.54 16 4 C -0.26 -3.88 8.69 -39.38 -0.34 -4.23 16 5 C -0.02 -0.29 5.87 -104.67 -0.61 -0.91 16 6 C -0.11 -1.12 10.01 36.00 0.36 -0.76 16 7 C -0.22 -3.44 9.61 -39.34 -0.38 -3.82 16 8 C 0.25 4.48 5.85 -83.80 -0.49 3.99 16 9 N -0.67 -12.38 5.40 -8.32 -0.04 -12.43 16 10 C 0.03 0.55 5.83 -83.68 -0.49 0.06 16 11 C -0.12 -2.79 7.96 -39.77 -0.32 -3.11 16 12 C -0.14 -3.67 8.61 -39.27 -0.34 -4.01 16 13 C 0.10 2.65 5.55 -106.79 -0.59 2.05 16 14 C -0.46 -12.25 9.03 -37.89 -0.34 -12.59 16 15 H 0.08 1.94 7.89 -52.49 -0.41 1.52 16 16 C 0.07 1.88 5.16 -17.34 -0.09 1.79 16 17 N -0.80 -20.83 11.00 55.54 0.61 -20.22 16 18 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 C -0.21 -5.00 9.74 -39.27 -0.38 -5.38 16 23 C -0.12 -2.59 9.89 -39.76 -0.39 -2.98 16 24 C -0.20 -3.97 8.00 -39.22 -0.31 -4.29 16 25 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 28 H 0.12 1.43 6.29 -52.49 -0.33 1.10 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.40 6.16 8.91 -40.82 -0.36 5.80 16 34 H 0.09 2.14 6.87 -52.49 -0.36 1.78 16 35 H 0.12 3.22 6.28 -52.49 -0.33 2.89 16 36 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 37 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.14 3.03 6.80 -52.48 -0.36 2.68 16 LS Contribution 327.36 15.07 4.93 4.93 Total: -1.00 -28.69 327.36 -8.76 -37.46 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.04 Total: 12.29 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -3.99 Total: -30.29 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.57 Total: -32.65 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.20 Total: -5.50 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.69 -8.76 -37.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211726554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.946 kcal (2) G-P(sol) polarization free energy of solvation -28.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds