Wall clock time and date at job start Tue Mar 31 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38100 * 119.98990 * 2 1 4 4 C 1.38883 * 119.97961 * 179.97438 * 3 2 1 5 5 N 1.39954 * 120.01967 * 179.97438 * 4 3 2 6 6 C 1.39698 * 119.99781 * 154.76552 * 5 4 3 7 7 C 1.39360 * 119.95500 * 328.14520 * 6 5 4 8 8 C 1.38463 * 120.42041 * 179.76317 * 7 6 5 9 9 C 1.37698 * 120.32992 * 0.51597 * 8 7 6 10 10 C 1.40757 * 119.89718 * 359.73981 * 9 8 7 11 11 C 1.41404 * 120.20797 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99914 * 27.52432 * 11 10 9 13 13 C 1.39920 * 120.00175 * 207.51642 * 11 10 9 14 14 N 1.30834 * 120.00247 * 12.07005 * 13 11 10 15 15 Si 1.86802 * 120.00360 * 192.07134 * 13 11 10 16 16 H 1.48506 * 109.47008 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47113 * 120.00028 * 15 13 11 18 18 H 1.48496 * 109.47430 * 240.00206 * 15 13 11 19 19 C 1.38307 * 119.95107 * 148.41950 * 6 5 4 20 20 C 1.38891 * 119.95886 * 0.25591 * 4 3 2 21 21 C 1.38104 * 119.97667 * 359.46794 * 20 4 3 22 22 C 1.50698 * 119.98513 * 180.27622 * 21 20 4 23 23 C 1.38710 * 119.98939 * 179.97438 * 2 1 3 24 24 O 1.35995 * 119.98383 * 0.02562 * 23 2 1 25 25 H 1.09008 * 109.46508 * 90.00030 * 1 2 3 26 26 H 1.08997 * 109.46953 * 210.00098 * 1 2 3 27 27 H 1.08997 * 109.47363 * 330.00636 * 1 2 3 28 28 H 1.07998 * 120.00815 * 0.02562 * 3 2 1 29 29 H 0.96998 * 120.00093 * 334.48717 * 5 4 3 30 30 H 1.07999 * 119.78727 * 0.02687 * 7 6 5 31 31 H 1.08006 * 119.83696 * 180.25588 * 8 7 6 32 32 H 1.08004 * 120.05468 * 179.76524 * 9 8 7 33 33 H 0.96998 * 120.00605 * 179.97438 * 14 13 11 34 34 H 1.07995 * 120.16269 * 359.95485 * 19 6 5 35 35 H 1.07991 * 120.01070 * 179.72188 * 20 4 3 36 36 H 1.08997 * 109.47321 * 270.25335 * 22 21 20 37 37 H 1.08996 * 109.47405 * 30.25445 * 22 21 20 38 38 H 1.09005 * 109.46765 * 150.25436 * 22 21 20 39 39 H 0.96698 * 114.00004 * 89.99682 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1961 0.0000 4 6 3.5861 1.1959 0.0005 5 7 4.2865 2.4075 0.0000 6 6 5.5834 2.4649 0.5162 7 6 5.9509 1.6288 1.5689 8 6 7.2350 1.6742 2.0848 9 6 8.1606 2.5541 1.5698 10 6 7.8025 3.4084 0.5100 11 6 8.7479 4.3142 -0.0242 12 1 9.8025 4.0869 0.0275 13 6 8.3172 5.5047 -0.6199 14 7 7.0768 5.8959 -0.4779 15 14 9.5130 6.5357 -1.6181 16 1 10.8450 5.8792 -1.6267 17 1 9.0147 6.6617 -3.0113 18 1 9.6299 7.8855 -1.0103 19 6 6.4991 3.3553 -0.0143 20 6 4.2795 -0.0076 -0.0043 21 6 3.5875 -1.2027 0.0015 22 6 4.3396 -2.5086 0.0025 23 6 2.2003 -1.2014 0.0005 24 8 1.5198 -2.3788 0.0005 25 1 -0.3632 0.0000 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6573 2.1314 0.0004 29 1 3.8731 3.2066 -0.3625 30 1 5.2307 0.9382 1.9821 31 1 7.5109 1.0190 2.8979 32 1 9.1599 2.5883 1.9780 33 1 6.7782 6.7213 -0.8906 34 1 6.2144 4.0063 -0.8276 35 1 5.3594 -0.0087 -0.0084 36 1 4.5214 -2.8240 -1.0249 37 1 5.2920 -2.3789 0.5166 38 1 3.7495 -3.2673 0.5166 39 1 1.3233 -2.7195 -0.8828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211916623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:45 Heat of formation + Delta-G solvation = -10.048126 kcal Electronic energy + Delta-G solvation = -21220.920768 eV Core-core repulsion = 18092.408097 eV Total energy + Delta-G solvation = -3128.512671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.96983 -38.16257 -36.55753 -34.51526 -33.43438 -33.28768 -30.07320 -29.60470 -27.72244 -26.58844 -26.21623 -25.21010 -21.68045 -21.36717 -20.51504 -19.85696 -18.04534 -17.40906 -16.62355 -15.76472 -15.36654 -15.28629 -14.71826 -14.53777 -13.73596 -13.33419 -13.32420 -13.10634 -12.91999 -12.77031 -12.70785 -12.46398 -12.05211 -11.86766 -11.68751 -11.55171 -11.46910 -11.18416 -11.11062 -10.74513 -10.54235 -10.14805 -9.86835 -9.73610 -9.47285 -9.21581 -8.35276 -7.87006 -7.41317 -6.81837 -6.36003 -4.43631 1.59328 1.61364 2.74694 2.99647 3.05534 3.10671 3.17791 3.90873 3.92983 4.01000 4.51978 4.62869 4.96554 5.02026 5.41921 5.54491 5.59365 5.62392 5.63796 5.74694 5.81399 5.93460 5.97458 6.12321 6.23130 6.34891 6.47529 6.53592 6.68021 6.75667 6.82143 6.94752 7.02105 7.09629 7.25514 7.29857 7.68323 7.79662 7.88722 7.93217 8.03938 8.33269 8.41052 8.65500 8.86657 8.92182 10.18074 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.003902 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.145706 B = 7174.264617 C = 7741.810879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.072 4.072 3 C -0.183 4.183 4 C 0.213 3.787 5 N -0.683 5.683 6 C 0.170 3.830 7 C -0.265 4.265 8 C -0.077 4.077 9 C -0.237 4.237 10 C 0.127 3.873 11 C -0.462 4.462 12 H 0.078 0.922 13 C 0.074 3.926 14 N -0.801 5.801 15 Si 0.909 3.091 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.275 1.275 19 C -0.191 4.191 20 C -0.160 4.160 21 C -0.071 4.071 22 C -0.110 4.110 23 C 0.038 3.962 24 O -0.494 6.494 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.403 0.597 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.278 0.722 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 -9.115 -2.557 13.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.073 4.073 3 C -0.205 4.205 4 C 0.111 3.889 5 N -0.304 5.304 6 C 0.076 3.924 7 C -0.286 4.286 8 C -0.096 4.096 9 C -0.257 4.257 10 C 0.124 3.876 11 C -0.492 4.492 12 H 0.096 0.904 13 C -0.142 4.142 14 N -0.427 5.427 15 Si 0.734 3.266 16 H -0.184 1.184 17 H -0.198 1.198 18 H -0.200 1.200 19 C -0.214 4.214 20 C -0.181 4.181 21 C -0.072 4.072 22 C -0.167 4.167 23 C -0.008 4.008 24 O -0.302 6.302 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.238 0.762 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.141 0.859 35 H 0.154 0.846 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.132 -8.883 -1.935 12.886 hybrid contribution 0.275 1.000 -1.034 1.465 sum -8.856 -7.883 -2.970 12.223 Atomic orbital electron populations 1.20647 0.91219 1.02797 1.01841 1.19795 0.95886 0.92036 0.99603 1.20446 0.92168 0.97537 1.10338 1.17833 0.90505 0.86670 0.93889 1.42288 1.14560 1.08072 1.65466 1.17611 0.83108 0.98082 0.93601 1.20217 0.97485 1.08051 1.02857 1.20362 0.93342 0.97723 0.98146 1.21019 0.98978 1.03984 1.01680 1.17396 0.91835 0.89804 0.88557 1.19604 0.94684 1.01954 1.32921 0.90362 1.25884 0.95694 0.98025 0.94598 1.69807 1.16875 1.20884 1.35152 0.86243 0.81290 0.79419 0.79649 1.18434 1.19825 1.20002 1.21106 0.93845 1.03080 1.03334 1.20879 1.00791 0.89962 1.06506 1.19932 0.92701 0.95449 0.99109 1.20667 0.99864 0.94198 1.01965 1.17793 0.89020 0.84508 1.09487 1.84828 1.76382 1.36484 1.32504 0.91673 0.91110 0.91784 0.86124 0.76212 0.88858 0.89124 0.88920 0.91104 0.85878 0.84637 0.91599 0.91393 0.91177 0.77270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.79 36.01 0.35 -0.83 16 2 C -0.07 -1.02 5.89 -104.50 -0.62 -1.64 16 3 C -0.18 -2.81 9.59 -39.39 -0.38 -3.19 16 4 C 0.21 3.77 6.05 -83.67 -0.51 3.26 16 5 N -0.68 -13.21 5.47 -8.41 -0.05 -13.25 16 6 C 0.17 3.86 5.90 -83.83 -0.49 3.36 16 7 C -0.26 -5.89 7.76 -39.08 -0.30 -6.19 16 8 C -0.08 -1.71 10.01 -39.70 -0.40 -2.11 16 9 C -0.24 -5.73 9.79 -38.83 -0.38 -6.11 16 10 C 0.13 3.33 5.56 -106.85 -0.59 2.73 16 11 C -0.46 -12.05 9.06 -37.75 -0.34 -12.39 16 12 H 0.08 1.97 7.87 -52.48 -0.41 1.56 16 13 C 0.07 1.84 5.24 -17.35 -0.09 1.75 16 14 N -0.80 -20.26 10.83 55.55 0.60 -19.66 16 15 Si 0.91 18.46 29.58 -169.99 -5.03 13.43 16 16 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 19 C -0.19 -4.82 8.57 -38.67 -0.33 -5.15 16 20 C -0.16 -2.79 7.52 -39.39 -0.30 -3.09 16 21 C -0.07 -1.08 5.89 -104.50 -0.62 -1.69 16 22 C -0.11 -1.39 9.79 36.00 0.35 -1.03 16 23 C 0.04 0.54 6.65 -39.23 -0.26 0.28 16 24 O -0.49 -5.99 11.58 -19.72 -0.23 -6.22 16 25 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.07 0.76 7.52 -51.93 -0.39 0.37 16 27 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.40 7.17 8.89 -40.82 -0.36 6.81 16 30 H 0.09 1.99 6.56 -52.49 -0.34 1.65 16 31 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 33 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 34 H 0.12 3.20 6.17 -52.49 -0.32 2.88 16 35 H 0.14 2.57 6.32 -52.49 -0.33 2.24 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 38 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 39 H 0.37 2.89 9.06 45.56 0.41 3.30 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -28.16 326.68 -8.91 -37.08 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -4.23 Total: 15.74 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -4.90 Total: -32.04 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.56 Total: -32.91 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.23 Total: -6.22 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.16 -8.91 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211916623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.027 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds