Wall clock time and date at job start Tue Mar 31 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38055 * 119.98896 * 2 1 4 4 C 1.38950 * 119.97714 * 179.97438 * 3 2 1 5 5 N 1.39770 * 120.02407 * 179.97438 * 4 3 2 6 6 C 1.38623 * 120.00249 * 185.74179 * 5 4 3 7 7 C 1.38832 * 120.30524 * 256.18660 * 6 5 4 8 8 C 1.38101 * 120.02583 * 180.29320 * 7 6 5 9 9 C 1.38944 * 120.62900 * 359.44735 * 8 7 6 10 10 C 1.36412 * 120.61281 * 0.55340 * 9 8 7 11 11 C 1.40745 * 119.95687 * 359.72608 * 10 9 8 12 12 C 1.41004 * 120.31319 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00068 * 204.22309 * 12 11 10 14 14 C 1.39890 * 120.00191 * 24.22182 * 12 11 10 15 15 N 1.30901 * 119.99960 * 18.95053 * 14 12 11 16 16 Si 1.86798 * 120.00357 * 198.95477 * 14 12 11 17 17 H 1.48503 * 109.47201 * 59.99992 * 16 14 12 18 18 H 1.48496 * 109.47355 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46995 * 300.00118 * 16 14 12 20 20 C 1.38947 * 119.94979 * 0.25940 * 4 3 2 21 21 C 1.38055 * 119.97664 * 359.48871 * 20 4 3 22 22 C 1.50702 * 119.98954 * 180.23625 * 21 20 4 23 23 C 1.38746 * 120.02302 * 0.50363 * 21 20 4 24 24 O 1.35974 * 119.97569 * 179.76416 * 23 21 20 25 25 H 1.09003 * 109.46721 * 89.99945 * 1 2 3 26 26 H 1.08999 * 109.46770 * 209.99927 * 1 2 3 27 27 H 1.08998 * 109.47274 * 330.00371 * 1 2 3 28 28 H 1.08003 * 120.01190 * 0.02562 * 3 2 1 29 29 H 0.97005 * 119.99745 * 5.74887 * 5 4 3 30 30 H 1.08002 * 119.98857 * 0.02562 * 7 6 5 31 31 H 1.07998 * 119.68270 * 179.71945 * 8 7 6 32 32 H 1.08003 * 119.69352 * 180.28209 * 9 8 7 33 33 H 1.07998 * 120.02519 * 179.75057 * 10 9 8 34 34 H 0.96993 * 120.00122 * 179.97438 * 15 14 12 35 35 H 1.08005 * 120.00994 * 179.74263 * 20 4 3 36 36 H 1.09006 * 109.46807 * 270.27239 * 22 21 20 37 37 H 1.08995 * 109.47187 * 30.27061 * 22 21 20 38 38 H 1.09000 * 109.47080 * 150.27946 * 22 21 20 39 39 H 0.96695 * 114.00573 * 269.98390 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1957 0.0000 4 6 3.5866 1.1954 0.0005 5 7 4.2862 2.4055 0.0000 6 6 5.6673 2.4076 -0.1196 7 6 6.4664 2.6370 0.9923 8 6 7.8415 2.6438 0.8654 9 6 8.4399 2.4113 -0.3668 10 6 7.6796 2.1830 -1.4762 11 6 6.2757 2.1761 -1.3769 12 6 5.4826 1.9405 -2.5186 13 1 4.4668 2.3054 -2.5553 14 6 6.0115 1.2340 -3.6040 15 7 7.0707 0.4820 -3.4420 16 14 5.2065 1.3636 -5.2846 17 1 5.2249 2.7788 -5.7345 18 1 5.9531 0.5259 -6.2572 19 1 3.8017 0.8899 -5.1984 20 6 4.2800 -0.0086 -0.0044 21 6 3.5880 -1.2032 0.0009 22 6 4.3398 -2.5093 0.0009 23 6 2.2005 -1.2017 0.0005 24 8 1.5199 -2.3789 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6571 2.1311 0.0004 29 1 3.8053 3.2438 0.0834 30 1 6.0123 2.8144 1.9560 31 1 8.4577 2.8273 1.7332 32 1 9.5169 2.4156 -0.4479 33 1 8.1547 2.0073 -2.4300 34 1 7.4372 -0.0081 -4.1945 35 1 5.3601 -0.0100 -0.0082 36 1 4.5214 -2.8240 -1.0268 37 1 5.2922 -2.3803 0.5151 38 1 3.7496 -3.2683 0.5143 39 1 1.3230 -2.7197 -0.8824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211917498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:47 Heat of formation + Delta-G solvation = -7.722073 kcal Electronic energy + Delta-G solvation = -22045.376192 eV Core-core repulsion = 18916.964385 eV Total energy + Delta-G solvation = -3128.411806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.55624 -38.06425 -36.26095 -34.00397 -33.70068 -33.01747 -29.86148 -29.60175 -27.70977 -26.12024 -26.11014 -25.02222 -21.39269 -21.08077 -20.55415 -19.60859 -17.65517 -17.34524 -16.50949 -15.88812 -15.26678 -14.91943 -14.67052 -14.11755 -13.83207 -13.38831 -12.99600 -12.82263 -12.73341 -12.57763 -12.46732 -12.31641 -11.69094 -11.57943 -11.50303 -11.35582 -11.24554 -11.18193 -11.06083 -10.85981 -10.53220 -9.97928 -9.79810 -9.67823 -9.23662 -8.93092 -7.97038 -7.52382 -7.50464 -6.90862 -6.43773 -4.43306 2.01743 2.12406 2.68330 2.87073 3.00468 3.03654 3.17775 3.85784 4.30914 4.46342 4.55519 4.91204 5.29894 5.36248 5.55103 5.71002 5.85023 5.88433 5.95844 6.10632 6.13632 6.15598 6.24668 6.32523 6.34017 6.48231 6.61090 6.71219 6.92381 6.97168 7.08595 7.12863 7.21398 7.24889 7.35221 7.48909 7.67958 7.86171 8.01362 8.15617 8.19933 8.35975 8.53335 8.68493 8.77452 9.02000 10.05659 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.007118 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.384221 B = 3932.587673 C = 4840.381928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.069 4.069 3 C -0.205 4.205 4 C 0.242 3.758 5 N -0.665 5.665 6 C -0.005 4.005 7 C -0.085 4.085 8 C -0.242 4.242 9 C -0.102 4.102 10 C -0.159 4.159 11 C 0.115 3.885 12 C -0.438 4.438 13 H 0.078 0.922 14 C 0.079 3.921 15 N -0.783 5.783 16 Si 0.903 3.097 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.151 4.151 21 C -0.064 4.064 22 C -0.107 4.107 23 C 0.019 3.981 24 O -0.496 6.496 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.389 0.611 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.282 0.718 35 H 0.130 0.870 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 -1.862 1.952 7.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.070 4.070 3 C -0.228 4.228 4 C 0.137 3.863 5 N -0.285 5.285 6 C -0.098 4.098 7 C -0.104 4.104 8 C -0.262 4.262 9 C -0.121 4.121 10 C -0.178 4.178 11 C 0.111 3.889 12 C -0.467 4.467 13 H 0.096 0.904 14 C -0.140 4.140 15 N -0.407 5.407 16 Si 0.727 3.273 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.173 4.173 21 C -0.066 4.066 22 C -0.164 4.164 23 C -0.027 4.027 24 O -0.304 6.304 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.223 0.777 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.148 0.852 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.281 -1.989 2.425 7.020 hybrid contribution -0.392 0.302 -1.395 1.480 sum -6.673 -1.686 1.030 6.959 Atomic orbital electron populations 1.20606 0.91753 1.02275 1.01575 1.19667 0.95401 0.92165 0.99798 1.20198 0.92034 0.97089 1.13448 1.17907 0.90177 0.87045 0.91127 1.41209 1.04442 1.04079 1.78774 1.17257 0.81529 1.18468 0.92595 1.20752 0.93615 1.00172 0.95903 1.20196 0.93713 1.15506 0.96827 1.20463 0.97599 1.00334 0.93654 1.20996 0.93667 1.05277 0.97894 1.17797 0.92090 0.88236 0.90825 1.19363 0.99792 1.29473 0.98071 0.90396 1.25913 0.94351 0.92922 1.00853 1.69845 1.19285 1.18584 1.33007 0.86430 0.80318 0.79480 0.81025 1.18796 1.20242 1.18884 1.20518 1.00361 0.89709 1.06746 1.19861 0.92597 0.95399 0.98704 1.20623 0.99483 0.94340 1.01917 1.17694 0.88966 0.84299 1.11769 1.84806 1.76479 1.36818 1.32283 0.91961 0.91420 0.92161 0.86816 0.77688 0.89299 0.89406 0.89465 0.86415 0.90685 0.85239 0.91666 0.91799 0.91635 0.77806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.79 36.01 0.35 -1.06 16 2 C -0.07 -1.18 5.89 -104.50 -0.62 -1.80 16 3 C -0.20 -3.67 9.55 -39.38 -0.38 -4.05 16 4 C 0.24 4.91 6.18 -83.71 -0.52 4.39 16 5 N -0.66 -13.46 4.68 -8.02 -0.04 -13.50 16 6 C 0.00 -0.11 4.54 -83.30 -0.38 -0.49 16 7 C -0.08 -1.84 9.96 -39.41 -0.39 -2.23 16 8 C -0.24 -5.24 10.03 -39.37 -0.40 -5.63 16 9 C -0.10 -2.30 9.96 -39.98 -0.40 -2.69 16 10 C -0.16 -3.91 8.64 -39.29 -0.34 -4.25 16 11 C 0.11 2.85 5.17 -106.63 -0.55 2.30 16 12 C -0.44 -10.99 8.30 -37.92 -0.31 -11.30 16 13 H 0.08 1.96 7.59 -52.49 -0.40 1.56 16 14 C 0.08 1.90 5.11 -17.33 -0.09 1.81 16 15 N -0.78 -19.25 11.01 55.55 0.61 -18.64 16 16 Si 0.90 18.36 29.60 -169.99 -5.03 13.33 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 C -0.15 -3.23 8.85 -39.39 -0.35 -3.58 16 21 C -0.06 -1.23 5.89 -104.50 -0.62 -1.85 16 22 C -0.11 -1.78 9.79 36.01 0.35 -1.43 16 23 C 0.02 0.33 6.65 -39.21 -0.26 0.07 16 24 O -0.50 -7.59 11.58 -19.66 -0.23 -7.82 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.88 7.52 -51.93 -0.39 0.49 16 27 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 28 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.39 6.92 8.84 -40.82 -0.36 6.56 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.12 3.00 6.18 -52.49 -0.32 2.67 16 34 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 35 H 0.13 3.11 6.79 -52.48 -0.36 2.75 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 38 H 0.06 0.99 7.52 -51.93 -0.39 0.60 16 39 H 0.37 4.18 9.06 45.56 0.41 4.60 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -27.04 328.99 -8.93 -35.98 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -4.32 Total: 17.47 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: -4.89 Total: -31.77 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.57 Total: -32.14 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.23 Total: -7.82 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.04 -8.93 -35.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211917498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.256 kcal (2) G-P(sol) polarization free energy of solvation -27.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds