Wall clock time and date at job start Tue Mar 31 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38322 * 119.95949 * 2 1 4 4 C 1.38267 * 120.15459 * 180.02562 * 3 2 1 5 5 C 1.38114 * 120.08158 * 359.71684 * 4 3 2 6 6 C 1.50691 * 120.04452 * 180.29775 * 5 4 3 7 7 C 1.38918 * 119.91634 * 0.53324 * 5 4 3 8 8 N 1.39674 * 120.07919 * 179.74503 * 7 5 4 9 9 C 1.39790 * 120.00462 * 174.85737 * 8 7 5 10 10 C 1.38766 * 120.10839 * 254.83601 * 9 8 7 11 11 C 1.38184 * 119.99494 * 180.02562 * 10 9 8 12 12 C 1.38358 * 120.20232 * 0.02562 * 11 10 9 13 13 C 1.38173 * 120.21286 * 359.67794 * 12 11 10 14 14 C 1.38724 * 120.00868 * 0.59602 * 13 12 11 15 15 O 1.35782 * 120.10428 * 179.69859 * 14 13 12 16 16 C 1.34798 * 117.00213 * 5.62800 * 15 14 13 17 17 H 1.08000 * 120.00069 * 354.93056 * 16 15 14 18 18 C 1.38621 * 120.00235 * 174.65712 * 16 15 14 19 19 N 1.31586 * 120.00168 * 0.27482 * 18 16 15 20 20 Si 1.86799 * 120.00286 * 180.27623 * 18 16 15 21 21 H 1.48501 * 109.47224 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47438 * 119.99613 * 20 18 16 23 23 H 1.48496 * 109.47234 * 240.00070 * 20 18 16 24 24 C 1.38065 * 119.96371 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47462 * 270.02374 * 1 2 3 26 26 H 1.08996 * 109.47133 * 30.02599 * 1 2 3 27 27 H 1.09001 * 109.47030 * 150.03079 * 1 2 3 28 28 H 1.08010 * 119.92039 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.95671 * 180.02562 * 4 3 2 30 30 H 1.08997 * 109.47624 * 270.23514 * 6 5 4 31 31 H 1.09004 * 109.47172 * 30.23485 * 6 5 4 32 32 H 1.09001 * 109.47359 * 150.22852 * 6 5 4 33 33 H 0.97009 * 119.99626 * 354.85799 * 8 7 5 34 34 H 1.08001 * 120.00755 * 0.04931 * 10 9 8 35 35 H 1.07999 * 119.90106 * 180.02562 * 11 10 9 36 36 H 1.08001 * 119.88901 * 179.97438 * 12 11 10 37 37 H 1.08008 * 119.99766 * 180.32055 * 13 12 11 38 38 H 0.96997 * 120.00199 * 180.02562 * 19 18 16 39 39 H 1.07991 * 120.04216 * 0.02628 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1984 0.0000 4 6 3.5804 1.2031 -0.0005 5 6 4.2767 0.0104 0.0048 6 6 5.7836 0.0165 0.0110 7 6 3.5863 -1.1951 -0.0004 8 7 4.2871 -2.4033 -0.0004 9 6 3.5945 -3.6131 0.1028 10 6 3.6068 -4.3227 1.2953 11 6 2.9218 -5.5187 1.3945 12 6 2.2227 -6.0127 0.3075 13 6 2.1997 -5.3101 -0.8820 14 6 2.8890 -4.1114 -0.9932 15 8 2.8727 -3.4224 -2.1631 16 6 2.0747 -3.8957 -3.1410 17 1 1.5488 -4.8290 -3.0045 18 6 1.9247 -3.1816 -4.3196 19 7 2.5655 -2.0444 -4.4861 20 14 0.8128 -3.8336 -5.6717 21 1 0.2115 -5.1210 -5.2403 22 1 -0.2663 -2.8500 -5.9426 23 1 1.6088 -4.0478 -6.9069 24 6 2.1965 -1.1961 0.0005 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8903 -0.5134 28 1 1.6557 2.1327 0.0004 29 1 4.1165 2.1407 -0.0001 30 1 6.1513 0.0200 -1.0151 31 1 6.1412 0.9069 0.5281 32 1 6.1485 -0.8730 0.5247 33 1 5.2545 -2.4028 -0.0720 34 1 4.1514 -3.9402 2.1458 35 1 2.9321 -6.0695 2.3235 36 1 1.6894 -6.9482 0.3906 37 1 1.6486 -5.6964 -1.7268 38 1 2.4602 -1.5446 -5.3106 39 1 1.6567 -2.1314 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212599340.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:31 Heat of formation + Delta-G solvation = 22.242150 kcal Electronic energy + Delta-G solvation = -22135.223313 eV Core-core repulsion = 19008.110853 eV Total energy + Delta-G solvation = -3127.112460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.69947 -38.54670 -36.49940 -34.88122 -32.96487 -32.26956 -29.87054 -28.98663 -28.70470 -27.44393 -25.35502 -24.28455 -22.44141 -21.54716 -20.60390 -20.06894 -17.98112 -17.30598 -16.39236 -15.82938 -14.90812 -14.71513 -14.62514 -14.22576 -13.82793 -13.75543 -13.51756 -13.24087 -12.96164 -12.84326 -12.68745 -12.24814 -12.17678 -11.72454 -11.46530 -11.42793 -11.31251 -11.03297 -10.92518 -10.80653 -10.65562 -10.47392 -10.31742 -9.66130 -9.34950 -8.86380 -8.15886 -7.88982 -7.29179 -6.67960 -6.44859 -4.04094 1.99931 2.06651 2.29583 2.34947 3.10402 3.12214 3.17212 3.93680 4.11737 4.47573 4.50977 5.05786 5.19841 5.36778 5.40384 5.61420 5.62116 5.67103 5.74782 5.82219 5.97799 6.00438 6.03559 6.07020 6.15862 6.22030 6.33796 6.39350 6.41285 6.63633 6.71349 6.74534 7.01927 7.03379 7.07195 7.16647 7.30673 7.32364 7.33201 7.53448 7.70520 7.95456 8.22894 8.42854 8.98979 9.68380 10.70814 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011359 B = 0.007767 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.394410 B = 3604.282202 C = 4823.787421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.050 4.050 3 C -0.182 4.182 4 C -0.079 4.079 5 C -0.173 4.173 6 C -0.099 4.099 7 C 0.239 3.761 8 N -0.679 5.679 9 C 0.057 3.943 10 C -0.076 4.076 11 C -0.211 4.211 12 C -0.071 4.071 13 C -0.234 4.234 14 C 0.148 3.852 15 O -0.155 6.155 16 C -0.396 4.396 17 H 0.091 0.909 18 C 0.044 3.956 19 N -0.849 5.849 20 Si 0.936 3.064 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.158 4.158 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.397 0.603 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.269 0.731 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 1.378 8.690 8.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.051 4.051 3 C -0.202 4.202 4 C -0.097 4.097 5 C -0.177 4.177 6 C -0.156 4.156 7 C 0.137 3.863 8 N -0.304 5.304 9 C -0.037 4.037 10 C -0.096 4.096 11 C -0.231 4.231 12 C -0.090 4.090 13 C -0.254 4.254 14 C 0.091 3.909 15 O -0.057 6.057 16 C -0.472 4.472 17 H 0.108 0.892 18 C -0.162 4.162 19 N -0.483 5.483 20 Si 0.761 3.239 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.180 4.180 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.234 0.766 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.146 0.854 38 H 0.079 0.921 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.615 1.642 8.413 8.594 hybrid contribution -0.265 -0.495 -0.923 1.080 sum 0.350 1.147 7.490 7.586 Atomic orbital electron populations 1.20735 0.92057 1.02554 1.01342 1.19536 0.95316 0.92723 0.97477 1.20578 0.93946 0.96723 1.08938 1.20539 0.93880 0.96175 0.99147 1.19200 0.95260 0.91833 1.11422 1.20517 0.92097 1.01379 1.01633 1.17564 0.91189 0.85020 0.92530 1.41522 1.07335 1.00912 1.80631 1.16614 1.05450 0.89670 0.91993 1.20859 0.98608 0.95047 0.95046 1.20466 1.05245 0.98486 0.98872 1.20802 0.97205 0.98204 0.92780 1.21117 1.07357 0.97461 0.99422 1.19756 0.93665 0.90631 0.86871 1.84051 1.56911 1.47484 1.17272 1.21365 1.24931 1.07129 0.93777 0.89172 1.25253 0.97672 0.95375 0.97878 1.70081 1.39115 1.12892 1.26172 0.85718 0.79286 0.78849 0.80015 1.19114 1.20109 1.20182 1.20470 0.92181 0.97891 1.07491 0.91882 0.92051 0.91585 0.87334 0.87032 0.91888 0.92221 0.92682 0.76586 0.86907 0.87393 0.87387 0.85363 0.92116 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 36.00 0.36 -1.42 16 2 C -0.05 -0.96 5.88 -104.66 -0.62 -1.57 16 3 C -0.18 -3.21 9.70 -39.54 -0.38 -3.60 16 4 C -0.08 -1.36 9.70 -39.62 -0.38 -1.74 16 5 C -0.17 -3.17 5.90 -104.42 -0.62 -3.78 16 6 C -0.10 -1.47 9.53 36.00 0.34 -1.12 16 7 C 0.24 4.94 6.50 -83.76 -0.54 4.39 16 8 N -0.68 -13.48 5.05 -8.28 -0.04 -13.52 16 9 C 0.06 1.18 4.87 -83.55 -0.41 0.77 16 10 C -0.08 -1.35 9.96 -39.41 -0.39 -1.75 16 11 C -0.21 -3.56 10.04 -39.56 -0.40 -3.96 16 12 C -0.07 -1.28 10.04 -39.56 -0.40 -1.67 16 13 C -0.23 -4.96 9.16 -39.43 -0.36 -5.32 16 14 C 0.15 3.47 5.51 -38.92 -0.21 3.25 16 15 O -0.16 -4.29 9.24 0.04 0.00 -4.29 16 16 C -0.40 -10.85 9.49 30.87 0.29 -10.56 16 17 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 18 C 0.04 1.19 5.49 -17.52 -0.10 1.10 16 19 N -0.85 -24.71 13.67 55.48 0.76 -23.95 16 20 Si 0.94 20.47 29.55 -169.99 -5.02 15.44 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 C -0.16 -3.40 8.63 -39.37 -0.34 -3.74 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 27 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 28 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.05 0.75 6.63 -51.93 -0.34 0.40 16 33 H 0.40 7.07 6.90 -40.82 -0.28 6.79 16 34 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.13 2.73 5.64 -52.48 -0.30 2.44 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.12 2.72 6.31 -52.49 -0.33 2.39 16 LS Contribution 329.05 15.07 4.96 4.96 Total: -1.00 -30.52 329.05 -8.38 -38.90 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -4.88 Total: 13.18 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -4.15 Total: -30.73 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.72 Total: -37.47 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: 0.00 Total: -4.29 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.52 -8.38 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212599340.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.144 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds