Wall clock time and date at job start Tue Mar 31 2020 05:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38318 * 119.96094 * 2 1 4 4 C 1.38271 * 120.15540 * 180.02562 * 3 2 1 5 5 C 1.38118 * 120.07663 * 0.02562 * 4 3 2 6 6 C 1.38917 * 119.91904 * 359.97438 * 5 4 3 7 7 N 1.39680 * 120.07136 * 180.02562 * 6 5 4 8 8 C 1.39790 * 120.00131 * 355.14374 * 7 6 5 9 9 C 1.38778 * 120.10806 * 254.85839 * 8 7 6 10 10 C 1.38180 * 119.98913 * 180.29518 * 9 8 7 11 11 C 1.38351 * 120.21105 * 359.68226 * 10 9 8 12 12 C 1.38182 * 120.20973 * 0.02562 * 11 10 9 13 13 C 1.38723 * 120.00776 * 359.97438 * 12 11 10 14 14 O 1.35786 * 120.10145 * 180.02562 * 13 12 11 15 15 C 1.34803 * 116.99984 * 5.62647 * 14 13 12 16 16 H 1.07993 * 120.00236 * 354.92972 * 15 14 13 17 17 C 1.38622 * 119.99693 * 174.65942 * 15 14 13 18 18 N 1.31578 * 120.00295 * 0.27468 * 17 15 14 19 19 Si 1.86800 * 120.00093 * 180.27377 * 17 15 14 20 20 H 1.48502 * 109.47217 * 59.99782 * 19 17 15 21 21 H 1.48499 * 109.47372 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47057 * 299.99941 * 19 17 15 23 23 C 1.38072 * 119.96189 * 180.27354 * 2 1 3 24 24 C 1.50703 * 120.04249 * 0.02562 * 23 2 1 25 25 H 1.08994 * 109.46784 * 90.00450 * 1 2 3 26 26 H 1.09003 * 109.46980 * 210.00435 * 1 2 3 27 27 H 1.08994 * 109.47013 * 330.00126 * 1 2 3 28 28 H 1.07997 * 119.91971 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.96097 * 179.97438 * 4 3 2 30 30 H 1.07994 * 120.03259 * 179.97438 * 5 4 3 31 31 H 0.97002 * 119.99485 * 175.14781 * 7 6 5 32 32 H 1.07996 * 120.00025 * 0.02562 * 9 8 7 33 33 H 1.08005 * 119.89604 * 179.70058 * 10 9 8 34 34 H 1.07997 * 119.90072 * 180.02562 * 11 10 9 35 35 H 1.08002 * 119.99809 * 180.02562 * 12 11 10 36 36 H 0.96998 * 120.00720 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.46733 * 270.25501 * 24 23 2 38 38 H 1.09003 * 109.47007 * 30.24940 * 24 23 2 39 39 H 1.08997 * 109.47015 * 150.25220 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5805 1.2030 -0.0005 5 6 4.2768 0.0102 -0.0016 6 6 3.5862 -1.1952 -0.0016 7 7 4.2871 -2.4034 -0.0021 8 6 5.6812 -2.4027 -0.1052 9 6 6.2913 -2.7646 -1.2980 10 6 7.6696 -2.7689 -1.3952 11 6 8.4454 -2.4069 -0.3083 12 6 7.8467 -2.0393 0.8815 13 6 6.4636 -2.0318 0.9890 14 8 5.8733 -1.6703 2.1572 15 6 6.6813 -1.2182 3.1370 16 1 7.7528 -1.2334 3.0033 17 6 6.1365 -0.7287 4.3139 18 7 4.8310 -0.7102 4.4769 19 14 7.2558 -0.0951 5.6686 20 1 8.0678 1.0357 5.1515 21 1 6.4327 0.3702 6.8137 22 1 8.1569 -1.1870 6.1174 23 6 2.1966 -1.1962 -0.0057 24 6 1.4432 -2.5014 -0.0125 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6559 2.1325 -0.0004 29 1 4.1167 2.1405 -0.0010 30 1 5.3567 0.0147 -0.0024 31 1 3.8064 -3.2429 0.0689 32 1 5.6889 -3.0470 -2.1486 33 1 8.1430 -3.0555 -2.3228 34 1 9.5222 -2.4117 -0.3900 35 1 8.4555 -1.7569 1.7277 36 1 4.4497 -0.3673 5.3002 37 1 1.2572 -2.8188 1.0135 38 1 0.4929 -2.3696 -0.5300 39 1 2.0345 -3.2595 -0.5260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212599481.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:23 Heat of formation + Delta-G solvation = 7.403225 kcal Electronic energy + Delta-G solvation = -22026.945085 eV Core-core repulsion = 18899.189160 eV Total energy + Delta-G solvation = -3127.755924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.28492 -40.15971 -38.20954 -36.33612 -34.26264 -34.11653 -32.14935 -30.71485 -29.34129 -28.04285 -27.29700 -26.97674 -23.59376 -23.14509 -22.01853 -21.33581 -19.80291 -18.94272 -18.22797 -17.44956 -16.50917 -16.42842 -16.24587 -15.73895 -15.41141 -15.35135 -15.06042 -14.70498 -14.47172 -14.41680 -13.73108 -13.59840 -13.54835 -13.34095 -13.03369 -12.93005 -12.77946 -12.53827 -12.51144 -12.36822 -12.19467 -12.01485 -11.64127 -11.36560 -10.94887 -10.78885 -9.69453 -9.32357 -8.98174 -8.44328 -8.18550 -6.10742 0.45251 0.60232 0.72552 0.85783 1.31710 1.42124 1.46881 2.15626 2.61510 2.83604 3.03731 3.16071 3.50479 4.02077 4.07674 4.18178 4.26392 4.28218 4.38065 4.47827 4.58828 4.66763 4.70003 4.81648 4.85911 4.90668 4.93963 4.99029 5.05566 5.10345 5.13433 5.29731 5.40575 5.55739 5.58776 5.64533 5.74611 5.74752 5.85270 5.99548 6.06833 6.23040 6.67737 6.94571 7.00556 7.82449 8.76896 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012046 B = 0.007338 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.940641 B = 3814.650505 C = 5394.632101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.186 4.186 4 C -0.094 4.094 5 C -0.197 4.197 6 C 0.217 3.783 7 N -0.680 5.680 8 C 0.052 3.948 9 C -0.076 4.076 10 C -0.185 4.185 11 C -0.070 4.070 12 C -0.248 4.248 13 C 0.110 3.890 14 O -0.204 6.204 15 C -0.416 4.416 16 H 0.096 0.904 17 C -0.016 4.016 18 N -0.907 5.907 19 Si 1.010 2.990 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.258 1.258 23 C -0.178 4.178 24 C -0.098 4.098 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.404 0.596 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.118 0.882 36 H 0.269 0.731 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 -1.230 -10.723 11.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.057 4.057 3 C -0.206 4.206 4 C -0.112 4.112 5 C -0.219 4.219 6 C 0.115 3.885 7 N -0.307 5.307 8 C -0.042 4.042 9 C -0.096 4.096 10 C -0.204 4.204 11 C -0.088 4.088 12 C -0.268 4.268 13 C 0.057 3.943 14 O -0.109 6.109 15 C -0.492 4.492 16 H 0.114 0.886 17 C -0.215 4.215 18 N -0.545 5.545 19 Si 0.830 3.170 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.182 1.182 23 C -0.182 4.182 24 C -0.154 4.154 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.140 0.860 30 H 0.105 0.895 31 H 0.242 0.758 32 H 0.160 0.840 33 H 0.171 0.829 34 H 0.164 0.836 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.281 -1.159 -10.499 11.060 hybrid contribution 0.766 0.131 1.214 1.442 sum -2.514 -1.028 -9.284 9.674 Atomic orbital electron populations 1.20819 0.88797 1.03360 1.03288 1.19891 0.97385 0.91598 0.96831 1.20958 0.93366 0.98327 1.07912 1.20993 0.95223 0.96849 0.98165 1.20542 0.98513 0.92725 1.10120 1.17835 0.91206 0.86080 0.93401 1.41518 1.02736 1.05487 1.80924 1.17014 0.83009 1.11886 0.92299 1.21260 0.95660 0.98080 0.94581 1.21052 0.92607 1.06720 0.99975 1.21216 1.00725 0.95401 0.91460 1.21276 0.93527 1.11192 1.00788 1.20370 0.92639 0.94356 0.86982 1.84027 1.35940 1.72120 1.18767 1.21713 0.90731 1.42275 0.94498 0.88621 1.26425 0.98039 0.96716 1.00298 1.70215 1.12168 1.44756 1.27323 0.84777 0.77127 0.79041 0.76093 1.18523 1.19791 1.18187 1.19522 0.90735 0.97251 1.10735 1.20600 1.00289 0.92771 1.01765 0.89362 0.90902 0.90812 0.84491 0.85994 0.89493 0.75823 0.83963 0.82852 0.83622 0.86417 0.92221 0.92508 0.88998 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 9.18 71.24 0.65 -1.83 16 2 C -0.06 -1.88 5.88 -19.88 -0.12 -2.00 16 3 C -0.19 -6.48 9.70 22.30 0.22 -6.27 16 4 C -0.09 -3.76 10.04 22.25 0.22 -3.54 16 5 C -0.20 -8.99 8.94 22.40 0.20 -8.79 16 6 C 0.22 9.26 6.48 38.23 0.25 9.50 16 7 N -0.68 -27.79 5.05 -180.11 -0.91 -28.70 16 8 C 0.05 2.20 4.89 38.32 0.19 2.38 16 9 C -0.08 -2.57 9.97 22.39 0.22 -2.35 16 10 C -0.18 -5.55 10.04 22.28 0.22 -5.32 16 11 C -0.07 -2.34 10.04 22.28 0.22 -2.11 16 12 C -0.25 -10.74 9.16 22.37 0.21 -10.53 16 13 C 0.11 5.42 5.49 22.70 0.12 5.54 16 14 O -0.20 -12.05 9.19 -22.86 -0.21 -12.26 16 15 C -0.42 -24.30 9.49 67.91 0.64 -23.65 16 16 H 0.10 5.17 5.21 -2.91 -0.02 5.16 16 17 C -0.02 -0.92 5.49 84.82 0.47 -0.46 16 18 N -0.91 -56.21 13.67 21.61 0.30 -55.91 16 19 Si 1.01 43.70 29.55 68.60 2.03 45.73 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 C -0.18 -6.50 5.90 -19.73 -0.12 -6.61 16 24 C -0.10 -2.75 8.71 71.24 0.62 -2.13 16 25 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 1.59 6.72 -2.39 -0.02 1.58 16 27 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 28 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 29 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 30 H 0.09 4.38 6.30 -2.91 -0.02 4.36 16 31 H 0.40 14.67 6.89 -92.71 -0.64 14.03 16 32 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 33 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.12 5.22 5.64 -2.91 -0.02 5.21 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 2.01 6.72 -2.39 -0.02 2.00 16 39 H 0.06 1.66 6.63 -2.39 -0.02 1.64 16 Total: -1.00 -72.89 325.24 5.87 -67.02 By element: Atomic # 1 Polarization: 41.84 SS G_CDS: 0.44 Total: 42.28 kcal Atomic # 6 Polarization: -62.39 SS G_CDS: 4.23 Total: -58.16 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -0.61 Total: -84.61 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.21 Total: -12.26 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -72.89 5.87 -67.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212599481.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.426 kcal (2) G-P(sol) polarization free energy of solvation -72.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds