Wall clock time and date at job start Tue Mar 31 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47393 * 2 1 4 4 C 1.38320 * 119.96140 * 270.02150 * 3 2 1 5 5 C 1.38272 * 120.15436 * 179.97438 * 4 3 2 6 6 C 1.38108 * 120.07704 * 359.74653 * 5 4 3 7 7 C 1.38919 * 119.92240 * 0.50902 * 6 5 4 8 8 N 1.39677 * 120.07726 * 179.76831 * 7 6 5 9 9 C 1.39791 * 119.99900 * 354.98284 * 8 7 6 10 10 C 1.38770 * 120.10659 * 254.88982 * 9 8 7 11 11 C 1.38184 * 119.98933 * 180.25678 * 10 9 8 12 12 C 1.38353 * 120.20843 * 359.74050 * 11 10 9 13 13 C 1.38176 * 120.21199 * 0.02562 * 12 11 10 14 14 C 1.38720 * 120.00516 * 359.97438 * 13 12 11 15 15 O 1.35786 * 120.10021 * 180.02562 * 14 13 12 16 16 C 1.34800 * 116.99930 * 5.65320 * 15 14 13 17 17 H 1.08000 * 120.00706 * 354.95061 * 16 15 14 18 18 C 1.38633 * 120.00014 * 174.94907 * 16 15 14 19 19 N 1.31580 * 119.99833 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99734 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47245 * 90.00186 * 20 18 16 22 22 H 1.48500 * 109.46911 * 209.99969 * 20 18 16 23 23 H 1.48500 * 109.47166 * 329.99954 * 20 18 16 24 24 C 1.38064 * 119.96060 * 89.99728 * 3 2 1 25 25 H 1.08997 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47447 * 300.00455 * 1 2 3 27 27 H 1.09007 * 109.47038 * 60.00347 * 1 2 3 28 28 H 1.08999 * 109.47447 * 239.99544 * 2 1 3 29 29 H 1.09001 * 109.47300 * 120.00018 * 2 1 3 30 30 H 1.08001 * 119.92018 * 359.95218 * 4 3 2 31 31 H 1.07997 * 119.95734 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.03971 * 180.25451 * 6 5 4 33 33 H 0.97002 * 119.99878 * 174.98126 * 8 7 6 34 34 H 1.07998 * 120.00335 * 359.97370 * 10 9 8 35 35 H 1.08003 * 119.89308 * 179.77117 * 11 10 9 36 36 H 1.08000 * 119.89185 * 180.02562 * 12 11 10 37 37 H 1.08000 * 119.99738 * 179.97438 * 13 12 11 38 38 H 0.97003 * 119.99167 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.04440 * 0.04069 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0722 -1.1984 5 6 2.7227 3.3760 -1.2030 6 6 2.9497 4.0342 -0.0102 7 6 2.7250 3.3812 1.1952 8 7 2.9581 4.0422 2.4034 9 6 3.5168 5.3236 2.4026 10 6 4.8446 5.5043 2.7632 11 6 5.3929 6.7727 2.7667 12 6 4.6235 7.8646 2.4064 13 6 3.3019 7.6939 2.0412 14 6 2.7425 6.4245 2.0346 15 8 1.4440 6.2544 1.6755 16 6 0.7864 7.3412 1.2244 17 1 1.2676 8.3080 1.2381 18 6 -0.5077 7.2180 0.7428 19 7 -1.1497 8.2790 0.3029 20 14 -1.3404 5.5460 0.7196 21 1 -2.0620 5.3346 2.0001 22 1 -2.3055 5.4892 -0.4076 23 1 -0.3157 4.4850 0.5479 24 6 2.2622 2.0709 1.1961 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0820 1.5612 -2.1326 31 1 2.9007 3.8818 -2.1405 32 1 3.3054 5.0539 -0.0146 33 1 2.7324 3.6120 3.2430 34 1 5.4480 4.6542 3.0454 35 1 6.4254 6.9120 3.0512 36 1 5.0574 8.8537 2.4105 37 1 2.7043 8.5487 1.7609 38 1 -2.0554 8.1927 -0.0338 39 1 2.0827 1.5617 2.1315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212600304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:48 Heat of formation + Delta-G solvation = 21.857835 kcal Electronic energy + Delta-G solvation = -21891.912842 eV Core-core repulsion = 18764.783717 eV Total energy + Delta-G solvation = -3127.129125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.81201 -38.70062 -36.74045 -35.24926 -33.26294 -32.40656 -30.31892 -29.37585 -28.75435 -27.38999 -25.26757 -23.74681 -22.10030 -21.89148 -21.27117 -19.92962 -17.90986 -17.46266 -16.86895 -16.11522 -15.46820 -14.93593 -14.74123 -14.36040 -14.14242 -13.80096 -13.64670 -13.47786 -13.20568 -12.97300 -12.83321 -12.48704 -12.23327 -12.03767 -11.61971 -11.40476 -11.20865 -11.14301 -10.96901 -10.83977 -10.74524 -10.39997 -10.19502 -9.80639 -9.45022 -8.90913 -8.32498 -8.24273 -7.47271 -6.92275 -6.45811 -4.11730 1.87271 1.88429 2.11679 2.18349 3.23237 3.25874 3.47235 3.91811 4.24222 4.32074 4.38555 4.74831 4.99338 5.06686 5.10925 5.41717 5.47684 5.51605 5.63440 5.65656 5.68065 5.81431 5.85864 5.91212 5.96129 6.05725 6.14351 6.26312 6.28858 6.42337 6.46619 6.56192 6.84931 6.93467 6.99352 7.02907 7.10648 7.20760 7.32848 7.50422 7.67089 7.92510 8.06176 8.25193 8.89810 9.51545 10.61083 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012159 B = 0.007872 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.204333 B = 3555.974687 C = 5254.664271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.048 4.048 4 C -0.182 4.182 5 C -0.075 4.075 6 C -0.170 4.170 7 C 0.231 3.769 8 N -0.682 5.682 9 C 0.058 3.942 10 C -0.077 4.077 11 C -0.202 4.202 12 C -0.073 4.073 13 C -0.220 4.220 14 C 0.155 3.845 15 O -0.198 6.198 16 C -0.390 4.390 17 H 0.106 0.894 18 C 0.069 3.931 19 N -0.876 5.876 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.248 1.248 24 C -0.197 4.197 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.399 0.601 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.280 0.720 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.764 -11.420 1.098 13.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.049 4.049 4 C -0.202 4.202 5 C -0.094 4.094 6 C -0.192 4.192 7 C 0.129 3.871 8 N -0.307 5.307 9 C -0.036 4.036 10 C -0.097 4.097 11 C -0.222 4.222 12 C -0.091 4.091 13 C -0.240 4.240 14 C 0.100 3.900 15 O -0.101 6.101 16 C -0.466 4.466 17 H 0.123 0.877 18 C -0.135 4.135 19 N -0.513 5.513 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.171 1.171 24 C -0.220 4.220 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.234 0.766 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.153 0.847 38 H 0.090 0.910 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.445 -11.371 0.965 13.626 hybrid contribution -0.671 -0.345 0.276 0.803 sum 6.774 -11.716 1.240 13.591 Atomic orbital electron populations 1.21747 0.95037 1.01116 1.02544 1.20483 0.95971 0.93127 1.02160 1.19457 0.97339 0.95326 0.92732 1.20645 1.06933 0.95777 0.96834 1.20838 0.97030 0.94238 0.97304 1.20707 1.07121 1.00358 0.91047 1.17817 0.92441 0.90531 0.86356 1.41511 1.68912 1.15073 1.05205 1.16611 0.91544 0.82781 1.12644 1.20866 0.92547 0.97108 0.99157 1.20547 0.99656 0.92441 1.09519 1.20870 0.93516 0.98054 0.96659 1.21237 0.96366 0.97395 1.08958 1.19488 0.84454 0.92480 0.93564 1.83647 1.18075 1.37085 1.71304 1.20771 0.97572 0.86945 1.41267 0.87657 1.24422 0.95508 0.98724 0.94862 1.69657 1.12972 1.28980 1.39724 0.86288 0.79779 0.84025 0.77825 1.20177 1.20885 1.17147 1.20304 1.09928 0.94022 0.97722 0.92802 0.92533 0.92504 0.91385 0.91502 0.87125 0.86602 0.86098 0.76577 0.86683 0.87134 0.87025 0.84696 0.91026 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.89 37.15 0.37 -1.37 16 2 C -0.08 -0.96 6.06 -27.88 -0.17 -1.13 16 3 C -0.05 -0.74 5.13 -104.65 -0.54 -1.28 16 4 C -0.18 -2.91 9.70 -39.54 -0.38 -3.30 16 5 C -0.08 -1.33 10.04 -39.62 -0.40 -1.72 16 6 C -0.17 -3.36 8.94 -39.38 -0.35 -3.72 16 7 C 0.23 4.33 6.51 -83.76 -0.54 3.78 16 8 N -0.68 -12.30 5.18 -8.28 -0.04 -12.34 16 9 C 0.06 1.12 4.89 -83.55 -0.41 0.71 16 10 C -0.08 -1.28 9.96 -39.40 -0.39 -1.67 16 11 C -0.20 -3.23 10.04 -39.56 -0.40 -3.62 16 12 C -0.07 -1.25 10.04 -39.56 -0.40 -1.65 16 13 C -0.22 -4.57 9.16 -39.43 -0.36 -4.93 16 14 C 0.16 3.46 5.49 -38.92 -0.21 3.25 16 15 O -0.20 -5.06 8.03 0.02 0.00 -5.06 16 16 C -0.39 -10.81 9.94 30.88 0.31 -10.50 16 17 H 0.11 2.97 5.44 -52.49 -0.29 2.69 16 18 C 0.07 1.93 5.49 -17.51 -0.10 1.83 16 19 N -0.88 -25.26 13.96 55.48 0.77 -24.48 16 20 Si 0.90 22.16 28.62 -169.99 -4.86 17.29 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.25 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.20 -3.28 9.55 -39.38 -0.38 -3.66 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.12 2.58 6.30 -52.49 -0.33 2.25 16 33 H 0.40 6.21 8.84 -40.82 -0.36 5.85 16 34 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.14 2.96 5.64 -52.49 -0.30 2.66 16 38 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -29.69 331.41 -8.54 -38.23 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.05 Total: 10.35 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -4.35 Total: -28.98 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.73 Total: -36.83 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: 0.00 Total: -5.06 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.86 Total: 17.29 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.69 -8.54 -38.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.091 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds