Wall clock time and date at job start Tue Mar 31 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47393 * 2 1 4 4 C 1.38320 * 119.96140 * 270.02150 * 3 2 1 5 5 C 1.38272 * 120.15436 * 179.97438 * 4 3 2 6 6 C 1.38108 * 120.07704 * 359.74653 * 5 4 3 7 7 C 1.38919 * 119.92240 * 0.50902 * 6 5 4 8 8 N 1.39677 * 120.07726 * 179.76831 * 7 6 5 9 9 C 1.39791 * 119.99900 * 354.98284 * 8 7 6 10 10 C 1.38770 * 120.10659 * 254.88982 * 9 8 7 11 11 C 1.38184 * 119.98933 * 180.25678 * 10 9 8 12 12 C 1.38353 * 120.20843 * 359.74050 * 11 10 9 13 13 C 1.38176 * 120.21199 * 0.02562 * 12 11 10 14 14 C 1.38720 * 120.00516 * 359.97438 * 13 12 11 15 15 O 1.35786 * 120.10021 * 180.02562 * 14 13 12 16 16 C 1.34800 * 116.99930 * 5.65320 * 15 14 13 17 17 H 1.08000 * 120.00706 * 354.95061 * 16 15 14 18 18 C 1.38633 * 120.00014 * 174.94907 * 16 15 14 19 19 N 1.31580 * 119.99833 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99734 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47245 * 90.00186 * 20 18 16 22 22 H 1.48500 * 109.46911 * 209.99969 * 20 18 16 23 23 H 1.48500 * 109.47166 * 329.99954 * 20 18 16 24 24 C 1.38064 * 119.96060 * 89.99728 * 3 2 1 25 25 H 1.08997 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47447 * 300.00455 * 1 2 3 27 27 H 1.09007 * 109.47038 * 60.00347 * 1 2 3 28 28 H 1.08999 * 109.47447 * 239.99544 * 2 1 3 29 29 H 1.09001 * 109.47300 * 120.00018 * 2 1 3 30 30 H 1.08001 * 119.92018 * 359.95218 * 4 3 2 31 31 H 1.07997 * 119.95734 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.03971 * 180.25451 * 6 5 4 33 33 H 0.97002 * 119.99878 * 174.98126 * 8 7 6 34 34 H 1.07998 * 120.00335 * 359.97370 * 10 9 8 35 35 H 1.08003 * 119.89308 * 179.77117 * 11 10 9 36 36 H 1.08000 * 119.89185 * 180.02562 * 12 11 10 37 37 H 1.08000 * 119.99738 * 179.97438 * 13 12 11 38 38 H 0.97003 * 119.99167 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.04440 * 0.04069 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0722 -1.1984 5 6 2.7227 3.3760 -1.2030 6 6 2.9497 4.0342 -0.0102 7 6 2.7250 3.3812 1.1952 8 7 2.9581 4.0422 2.4034 9 6 3.5168 5.3236 2.4026 10 6 4.8446 5.5043 2.7632 11 6 5.3929 6.7727 2.7667 12 6 4.6235 7.8646 2.4064 13 6 3.3019 7.6939 2.0412 14 6 2.7425 6.4245 2.0346 15 8 1.4440 6.2544 1.6755 16 6 0.7864 7.3412 1.2244 17 1 1.2676 8.3080 1.2381 18 6 -0.5077 7.2180 0.7428 19 7 -1.1497 8.2790 0.3029 20 14 -1.3404 5.5460 0.7196 21 1 -2.0620 5.3346 2.0001 22 1 -2.3055 5.4892 -0.4076 23 1 -0.3157 4.4850 0.5479 24 6 2.2622 2.0709 1.1961 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0820 1.5612 -2.1326 31 1 2.9007 3.8818 -2.1405 32 1 3.3054 5.0539 -0.0146 33 1 2.7324 3.6120 3.2430 34 1 5.4480 4.6542 3.0454 35 1 6.4254 6.9120 3.0512 36 1 5.0574 8.8537 2.4105 37 1 2.7043 8.5487 1.7609 38 1 -2.0554 8.1927 -0.0338 39 1 2.0827 1.5617 2.1315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212600304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:48 Heat of formation + Delta-G solvation = 6.306122 kcal Electronic energy + Delta-G solvation = -21892.587215 eV Core-core repulsion = 18764.783717 eV Total energy + Delta-G solvation = -3127.803498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33518 -40.11304 -38.37964 -36.57778 -34.49271 -34.38916 -31.71264 -30.87636 -30.00867 -28.84326 -27.19879 -24.86786 -23.49693 -23.32827 -22.76893 -21.25161 -19.80677 -19.12737 -18.23051 -17.60905 -16.83407 -16.64236 -16.17043 -15.79691 -15.63119 -15.43502 -15.03258 -14.87334 -14.50419 -14.39968 -14.16964 -14.11931 -14.00531 -13.32064 -13.04096 -12.74986 -12.66708 -12.60698 -12.44521 -12.33582 -12.07715 -11.77324 -11.60079 -11.46411 -11.06150 -10.94777 -9.75601 -9.58568 -9.10090 -8.53957 -8.31446 -6.23052 0.39712 0.55870 0.64938 0.78561 1.24019 1.27475 1.48282 2.23280 2.53662 2.74480 2.96797 3.02932 3.14941 3.90814 4.03638 4.13293 4.23048 4.29026 4.36009 4.45635 4.52998 4.57472 4.62257 4.70807 4.73029 4.78618 4.92072 5.04919 5.08348 5.18365 5.21805 5.36989 5.39832 5.46852 5.53664 5.68217 5.68634 5.72679 5.81649 5.86014 6.01497 6.18723 6.60364 6.82284 6.91298 7.60180 8.57581 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012159 B = 0.007872 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.204333 B = 3555.974687 C = 5254.664271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.047 4.047 4 C -0.184 4.184 5 C -0.089 4.089 6 C -0.202 4.202 7 C 0.213 3.787 8 N -0.683 5.683 9 C 0.064 3.936 10 C -0.075 4.075 11 C -0.173 4.173 12 C -0.073 4.073 13 C -0.238 4.238 14 C 0.119 3.881 15 O -0.225 6.225 16 C -0.391 4.391 17 H 0.083 0.917 18 C 0.018 3.982 19 N -0.921 5.921 20 Si 0.957 3.043 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.262 1.262 24 C -0.202 4.202 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.409 0.591 34 H 0.149 0.851 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.110 0.890 38 H 0.283 0.717 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.794 -14.433 1.892 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.048 4.048 4 C -0.204 4.204 5 C -0.107 4.107 6 C -0.224 4.224 7 C 0.111 3.889 8 N -0.310 5.310 9 C -0.030 4.030 10 C -0.094 4.094 11 C -0.192 4.192 12 C -0.091 4.091 13 C -0.258 4.258 14 C 0.067 3.933 15 O -0.132 6.132 16 C -0.468 4.468 17 H 0.100 0.900 18 C -0.180 4.180 19 N -0.562 5.562 20 Si 0.781 3.219 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.186 1.186 24 C -0.224 4.224 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.155 0.845 31 H 0.144 0.856 32 H 0.110 0.890 33 H 0.247 0.753 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.161 0.839 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.518 -14.398 1.783 17.351 hybrid contribution -0.935 0.556 0.105 1.093 sum 8.583 -13.842 1.888 16.396 Atomic orbital electron populations 1.21756 0.94849 1.02492 1.01387 1.20561 0.95931 0.90848 1.04048 1.19959 0.95726 0.97062 0.92044 1.21004 1.05875 0.95096 0.98427 1.21082 0.97239 0.95289 0.97109 1.20654 1.09551 0.99528 0.92678 1.18019 0.93262 0.91542 0.86075 1.41510 1.69245 1.14547 1.05666 1.16921 0.92285 0.82603 1.11215 1.21301 0.91433 0.98812 0.97853 1.21121 1.01271 0.91279 1.05547 1.21230 0.91905 1.00419 0.95593 1.21296 0.98106 0.96305 1.10125 1.20067 0.84060 0.94248 0.94910 1.83602 1.19850 1.35828 1.73900 1.20695 0.97897 0.87049 1.41125 0.90003 1.25075 0.96166 1.01598 0.95192 1.69731 1.13641 1.30487 1.42308 0.85380 0.78441 0.79946 0.78169 1.19605 1.19730 1.18615 1.20639 1.09174 0.93271 0.99330 0.90204 0.93913 0.93480 0.89401 0.89779 0.84463 0.85624 0.89007 0.75306 0.83310 0.82569 0.83902 0.87233 0.90755 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.89 71.98 0.71 -2.33 16 2 C -0.08 -1.56 6.06 29.85 0.18 -1.38 16 3 C -0.05 -1.35 5.13 -19.89 -0.10 -1.46 16 4 C -0.18 -5.58 9.70 22.30 0.22 -5.36 16 5 C -0.09 -3.12 10.04 22.25 0.22 -2.90 16 6 C -0.20 -8.16 8.94 22.40 0.20 -7.96 16 7 C 0.21 7.90 6.51 38.23 0.25 8.15 16 8 N -0.68 -24.20 5.18 -180.11 -0.93 -25.13 16 9 C 0.06 2.42 4.89 38.31 0.19 2.61 16 10 C -0.07 -2.25 9.96 22.38 0.22 -2.03 16 11 C -0.17 -4.83 10.04 22.28 0.22 -4.60 16 12 C -0.07 -2.40 10.04 22.28 0.22 -2.18 16 13 C -0.24 -10.26 9.16 22.37 0.20 -10.05 16 14 C 0.12 5.48 5.49 22.70 0.12 5.60 16 15 O -0.23 -12.17 8.03 -22.84 -0.18 -12.35 16 16 C -0.39 -23.12 9.94 67.91 0.68 -22.44 16 17 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 18 C 0.02 1.08 5.49 84.82 0.47 1.55 16 19 N -0.92 -55.83 13.96 21.61 0.30 -55.53 16 20 Si 0.96 47.73 28.62 68.60 1.96 49.69 16 21 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.26 -13.47 7.11 99.48 0.71 -12.77 16 24 C -0.20 -6.36 9.55 22.40 0.21 -6.15 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 29 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 30 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 32 H 0.09 4.15 6.30 -2.91 -0.02 4.13 16 33 H 0.41 12.28 8.84 -92.71 -0.82 11.46 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 36 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 37 H 0.11 5.21 5.64 -2.91 -0.02 5.20 16 38 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -68.98 331.41 5.61 -63.36 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.24 Total: 30.89 kcal Atomic # 6 Polarization: -55.16 SS G_CDS: 4.22 Total: -50.93 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -0.63 Total: -80.66 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.18 Total: -12.35 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.96 Total: 49.69 kcal Total: -68.98 5.61 -63.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.669 kcal (2) G-P(sol) polarization free energy of solvation -68.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds