Wall clock time and date at job start Tue Mar 31 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47497 * 2 1 4 4 C 1.38122 * 120.04105 * 265.00051 * 3 2 1 5 5 C 1.38265 * 120.07892 * 180.02562 * 4 3 2 6 6 C 1.38313 * 120.15699 * 0.02562 * 5 4 3 7 7 C 1.38080 * 120.07575 * 359.97438 * 6 5 4 8 8 C 1.38920 * 120.03951 * 85.01989 * 3 2 1 9 9 N 1.39670 * 120.07508 * 359.95578 * 8 3 2 10 10 C 1.39794 * 119.99713 * 74.29593 * 9 8 3 11 11 C 1.38774 * 120.10852 * 5.41762 * 10 9 8 12 12 C 1.38182 * 119.99270 * 180.02562 * 11 10 9 13 13 C 1.38347 * 120.20672 * 359.97438 * 12 11 10 14 14 C 1.38180 * 120.21429 * 0.02562 * 13 12 11 15 15 C 1.38723 * 120.00326 * 359.72213 * 14 13 12 16 16 O 1.35793 * 120.10039 * 180.27795 * 15 14 13 17 17 C 1.34797 * 116.99915 * 5.08693 * 16 15 14 18 18 H 1.07997 * 120.00414 * 354.94088 * 17 16 15 19 19 C 1.38630 * 119.99657 * 174.93207 * 17 16 15 20 20 N 1.31573 * 119.99971 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99782 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47263 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46802 * 120.00575 * 21 19 17 24 24 H 1.48504 * 109.47109 * 240.00423 * 21 19 17 25 25 H 1.08996 * 109.47142 * 300.00493 * 1 2 3 26 26 H 1.09006 * 109.47101 * 59.99981 * 1 2 3 27 27 H 1.09000 * 109.47499 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47174 * 239.99958 * 2 1 3 29 29 H 1.08998 * 109.47395 * 120.00049 * 2 1 3 30 30 H 1.08003 * 119.95700 * 359.74335 * 4 3 2 31 31 H 1.07996 * 119.92269 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.96833 * 179.97438 * 6 5 4 33 33 H 1.08002 * 120.03371 * 180.02562 * 7 6 5 34 34 H 0.97001 * 120.00497 * 254.28793 * 9 8 3 35 35 H 1.08000 * 120.00211 * 0.02757 * 11 10 9 36 36 H 1.08004 * 119.89490 * 179.97438 * 12 11 10 37 37 H 1.08000 * 119.89270 * 179.97438 * 13 12 11 38 38 H 1.07999 * 119.99728 * 180.02562 * 14 13 12 39 39 H 0.96999 * 119.99944 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0379 -1.1911 5 6 2.8227 3.3413 -1.1920 6 6 2.9574 4.0315 -0.0010 7 6 2.6306 3.4208 1.1935 8 6 2.1658 2.1112 1.1981 9 7 1.8338 1.4905 2.4044 10 6 2.6805 0.5195 2.9470 11 6 3.9041 0.2506 2.3499 12 6 4.7390 -0.7101 2.8880 13 6 4.3596 -1.4059 4.0219 14 6 3.1432 -1.1451 4.6234 15 6 2.3005 -0.1788 4.0937 16 8 1.1071 0.0831 4.6864 17 6 0.8464 -0.5544 5.8452 18 1 1.5346 -1.2980 6.2191 19 6 -0.3050 -0.2553 6.5569 20 7 -1.1435 0.6505 6.1012 21 14 -0.6659 -1.1381 8.1631 22 1 0.4253 -2.1025 8.4540 23 1 -0.7555 -0.1456 9.2641 24 1 -1.9543 -1.8677 8.0483 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.2619 1.5002 -2.1225 31 1 3.0786 3.8215 -2.1248 32 1 3.3186 5.0493 -0.0052 33 1 2.7356 3.9605 2.1231 34 1 1.0158 1.7331 2.8658 35 1 4.2037 0.7921 1.4649 36 1 5.6907 -0.9184 2.4218 37 1 5.0159 -2.1560 4.4379 38 1 2.8507 -1.6901 5.5087 39 1 -1.9489 0.8600 6.5994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212601808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:51 Heat of formation + Delta-G solvation = 23.240633 kcal Electronic energy + Delta-G solvation = -21849.500776 eV Core-core repulsion = 18722.431613 eV Total energy + Delta-G solvation = -3127.069163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.93588 -38.69598 -36.39292 -34.75000 -33.65447 -32.21894 -30.14922 -29.18700 -29.00132 -27.18057 -25.30862 -23.61560 -22.56059 -21.34795 -21.10867 -20.22366 -17.88330 -17.39094 -16.85171 -15.68265 -15.56943 -15.35299 -14.55595 -14.29446 -13.88017 -13.67464 -13.62664 -13.40571 -13.30057 -13.19638 -12.64875 -12.42465 -12.07063 -11.69126 -11.65186 -11.47022 -11.30353 -10.98413 -10.86335 -10.72074 -10.62160 -10.52092 -10.37979 -9.64061 -9.37124 -8.79453 -8.64701 -8.35572 -7.58328 -6.49794 -6.40822 -3.96249 1.48596 1.55107 2.31901 2.46589 3.14026 3.16062 3.20983 3.88188 3.97500 4.09878 4.66720 4.98495 5.03010 5.11652 5.19596 5.25210 5.37473 5.55647 5.67575 5.70013 5.75172 5.76240 5.88126 5.95733 6.12649 6.14794 6.22310 6.29966 6.37387 6.54718 6.58096 6.64346 6.66997 6.79341 6.87218 6.96225 7.08640 7.23242 7.34705 7.49287 7.74730 8.01575 8.20901 8.43551 9.06180 9.76167 10.77546 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.005090 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.424173 B = 5500.165987 C = 6070.890318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.115 4.115 5 C -0.131 4.131 6 C -0.119 4.119 7 C -0.127 4.127 8 C 0.173 3.827 9 N -0.701 5.701 10 C 0.151 3.849 11 C -0.151 4.151 12 C -0.167 4.167 13 C -0.120 4.120 14 C -0.205 4.205 15 C 0.103 3.897 16 O -0.186 6.186 17 C -0.383 4.383 18 H 0.090 0.910 19 C 0.037 3.963 20 N -0.868 5.868 21 Si 0.938 3.062 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.416 0.584 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.362 2.049 -11.228 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.133 4.133 5 C -0.149 4.149 6 C -0.138 4.138 7 C -0.147 4.147 8 C 0.079 3.921 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.187 4.187 13 C -0.140 4.140 14 C -0.225 4.225 15 C 0.049 3.951 16 O -0.091 6.091 17 C -0.459 4.459 18 H 0.107 0.893 19 C -0.166 4.166 20 N -0.504 5.504 21 Si 0.763 3.237 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.255 0.745 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.145 0.855 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.017 2.307 -11.308 13.015 hybrid contribution -0.401 -0.319 1.041 1.160 sum 5.617 1.989 -10.267 11.870 Atomic orbital electron populations 1.21652 0.94710 1.01597 1.01831 1.20520 0.96271 0.92416 1.03019 1.20328 0.98821 0.97069 0.92405 1.20907 1.00241 0.95087 0.97087 1.21044 1.01173 0.94849 0.97833 1.20961 1.00889 0.99683 0.92257 1.21537 0.99168 0.95573 0.98459 1.17383 0.97579 0.91385 0.85788 1.41614 1.26198 1.43163 1.22312 1.16972 0.91367 0.92655 0.93741 1.20215 0.93496 1.02123 1.01614 1.20374 0.99651 1.00049 0.98626 1.20588 0.96352 1.00408 0.96649 1.20938 0.95919 1.02147 1.03510 1.18904 0.88084 0.94972 0.93189 1.83871 1.27806 1.61798 1.35631 1.21283 1.07518 1.20091 0.97026 0.89265 1.25202 0.95282 0.96940 0.99143 1.70030 1.11334 1.30519 1.38508 0.85691 0.78726 0.78849 0.80425 1.19194 1.20309 1.20307 0.92076 0.93336 0.92649 0.91905 0.89779 0.86329 0.86467 0.86310 0.85892 0.74542 0.87195 0.87786 0.87793 0.85534 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.89 37.15 0.37 -1.71 16 2 C -0.08 -1.28 5.71 -27.89 -0.16 -1.44 16 3 C -0.08 -1.26 4.56 -104.41 -0.48 -1.74 16 4 C -0.11 -1.46 9.67 -39.61 -0.38 -1.85 16 5 C -0.13 -1.54 10.04 -39.54 -0.40 -1.93 16 6 C -0.12 -1.49 10.04 -39.61 -0.40 -1.88 16 7 C -0.13 -1.90 9.97 -39.37 -0.39 -2.29 16 8 C 0.17 2.85 4.60 -83.77 -0.39 2.47 16 9 N -0.70 -13.49 4.89 -8.28 -0.04 -13.53 16 10 C 0.15 3.13 5.21 -83.55 -0.44 2.70 16 11 C -0.15 -2.84 8.40 -39.40 -0.33 -3.18 16 12 C -0.17 -3.01 10.04 -39.56 -0.40 -3.40 16 13 C -0.12 -2.26 10.04 -39.56 -0.40 -2.66 16 14 C -0.20 -4.47 9.16 -39.42 -0.36 -4.84 16 15 C 0.10 2.43 6.67 -38.92 -0.26 2.17 16 16 O -0.19 -5.07 9.01 0.01 0.00 -5.07 16 17 C -0.38 -10.50 9.49 30.88 0.29 -10.20 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 20 N -0.87 -24.92 13.67 55.48 0.76 -24.16 16 21 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 29 H 0.08 1.49 5.60 -51.93 -0.29 1.20 16 30 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.42 8.71 8.20 -40.82 -0.33 8.37 16 35 H 0.11 1.94 6.71 -52.49 -0.35 1.59 16 36 H 0.10 1.59 8.06 -52.48 -0.42 1.16 16 37 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -29.06 327.93 -8.48 -37.53 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -4.90 Total: 13.65 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: -4.21 Total: -28.87 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.72 Total: -37.69 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: 0.00 Total: -5.07 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.06 -8.48 -37.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.774 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds