Wall clock time and date at job start Tue Mar 31 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47497 * 2 1 4 4 C 1.38122 * 120.04105 * 265.00051 * 3 2 1 5 5 C 1.38265 * 120.07892 * 180.02562 * 4 3 2 6 6 C 1.38313 * 120.15699 * 0.02562 * 5 4 3 7 7 C 1.38080 * 120.07575 * 359.97438 * 6 5 4 8 8 C 1.38920 * 120.03951 * 85.01989 * 3 2 1 9 9 N 1.39670 * 120.07508 * 359.95578 * 8 3 2 10 10 C 1.39794 * 119.99713 * 74.29593 * 9 8 3 11 11 C 1.38774 * 120.10852 * 5.41762 * 10 9 8 12 12 C 1.38182 * 119.99270 * 180.02562 * 11 10 9 13 13 C 1.38347 * 120.20672 * 359.97438 * 12 11 10 14 14 C 1.38180 * 120.21429 * 0.02562 * 13 12 11 15 15 C 1.38723 * 120.00326 * 359.72213 * 14 13 12 16 16 O 1.35793 * 120.10039 * 180.27795 * 15 14 13 17 17 C 1.34797 * 116.99915 * 5.08693 * 16 15 14 18 18 H 1.07997 * 120.00414 * 354.94088 * 17 16 15 19 19 C 1.38630 * 119.99657 * 174.93207 * 17 16 15 20 20 N 1.31573 * 119.99971 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99782 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47263 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46802 * 120.00575 * 21 19 17 24 24 H 1.48504 * 109.47109 * 240.00423 * 21 19 17 25 25 H 1.08996 * 109.47142 * 300.00493 * 1 2 3 26 26 H 1.09006 * 109.47101 * 59.99981 * 1 2 3 27 27 H 1.09000 * 109.47499 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47174 * 239.99958 * 2 1 3 29 29 H 1.08998 * 109.47395 * 120.00049 * 2 1 3 30 30 H 1.08003 * 119.95700 * 359.74335 * 4 3 2 31 31 H 1.07996 * 119.92269 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.96833 * 179.97438 * 6 5 4 33 33 H 1.08002 * 120.03371 * 180.02562 * 7 6 5 34 34 H 0.97001 * 120.00497 * 254.28793 * 9 8 3 35 35 H 1.08000 * 120.00211 * 0.02757 * 11 10 9 36 36 H 1.08004 * 119.89490 * 179.97438 * 12 11 10 37 37 H 1.08000 * 119.89270 * 179.97438 * 13 12 11 38 38 H 1.07999 * 119.99728 * 180.02562 * 14 13 12 39 39 H 0.96999 * 119.99944 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0379 -1.1911 5 6 2.8227 3.3413 -1.1920 6 6 2.9574 4.0315 -0.0010 7 6 2.6306 3.4208 1.1935 8 6 2.1658 2.1112 1.1981 9 7 1.8338 1.4905 2.4044 10 6 2.6805 0.5195 2.9470 11 6 3.9041 0.2506 2.3499 12 6 4.7390 -0.7101 2.8880 13 6 4.3596 -1.4059 4.0219 14 6 3.1432 -1.1451 4.6234 15 6 2.3005 -0.1788 4.0937 16 8 1.1071 0.0831 4.6864 17 6 0.8464 -0.5544 5.8452 18 1 1.5346 -1.2980 6.2191 19 6 -0.3050 -0.2553 6.5569 20 7 -1.1435 0.6505 6.1012 21 14 -0.6659 -1.1381 8.1631 22 1 0.4253 -2.1025 8.4540 23 1 -0.7555 -0.1456 9.2641 24 1 -1.9543 -1.8677 8.0483 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.2619 1.5002 -2.1225 31 1 3.0786 3.8215 -2.1248 32 1 3.3186 5.0493 -0.0052 33 1 2.7356 3.9605 2.1231 34 1 1.0158 1.7331 2.8658 35 1 4.2037 0.7921 1.4649 36 1 5.6907 -0.9184 2.4218 37 1 5.0159 -2.1560 4.4379 38 1 2.8507 -1.6901 5.5087 39 1 -1.9489 0.8600 6.5994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212601808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:50 Heat of formation + Delta-G solvation = 8.144100 kcal Electronic energy + Delta-G solvation = -21850.155410 eV Core-core repulsion = 18722.431613 eV Total energy + Delta-G solvation = -3127.723797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30891 -40.17276 -38.08076 -36.10145 -34.84167 -34.20462 -31.41219 -30.67741 -30.33661 -28.58891 -27.27470 -24.78232 -23.91024 -22.89254 -22.50333 -21.43233 -19.73398 -19.09418 -18.10981 -17.33546 -16.71857 -16.57731 -16.25276 -15.80827 -15.42343 -15.39228 -14.97923 -14.79923 -14.59986 -14.41750 -14.14674 -13.84955 -13.50005 -13.34251 -13.05044 -12.74328 -12.61147 -12.51718 -12.34205 -12.19131 -12.07040 -11.94747 -11.74710 -11.23088 -11.03405 -10.75679 -9.72470 -9.50323 -9.23161 -8.42170 -8.09732 -6.03934 0.37770 0.48782 0.70275 0.88362 1.35323 1.42734 1.52300 2.18656 2.60266 2.84701 2.91740 3.25294 3.51724 3.88772 3.97389 4.18022 4.22342 4.32997 4.35093 4.47750 4.48606 4.60104 4.62925 4.67582 4.69307 4.81388 4.97615 5.09813 5.10993 5.14265 5.19686 5.22899 5.33763 5.48952 5.54998 5.62300 5.69822 5.77326 5.87604 5.99898 6.06450 6.21179 6.66164 6.89306 7.04591 7.87346 8.81223 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.005090 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.424173 B = 5500.165987 C = 6070.890318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C -0.095 4.095 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.143 4.143 8 C 0.140 3.860 9 N -0.703 5.703 10 C 0.153 3.847 11 C -0.151 4.151 12 C -0.144 4.144 13 C -0.127 4.127 14 C -0.211 4.211 15 C 0.054 3.946 16 O -0.229 6.229 17 C -0.401 4.401 18 H 0.095 0.905 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.012 2.988 22 H -0.254 1.254 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.113 0.887 34 H 0.399 0.601 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.826 1.877 -13.616 16.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 C -0.097 4.097 4 C -0.130 4.130 5 C -0.137 4.137 6 C -0.133 4.133 7 C -0.163 4.163 8 C 0.047 3.953 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.174 4.174 12 C -0.163 4.163 13 C -0.146 4.146 14 C -0.231 4.231 15 C 0.003 3.997 16 O -0.136 6.136 17 C -0.478 4.478 18 H 0.113 0.887 19 C -0.219 4.219 20 N -0.560 5.560 21 Si 0.833 3.167 22 H -0.177 1.177 23 H -0.197 1.197 24 H -0.196 1.196 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.131 0.869 34 H 0.235 0.765 35 H 0.144 0.856 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.540 2.135 -13.747 16.324 hybrid contribution -0.946 -0.200 1.515 1.798 sum 7.594 1.935 -12.231 14.526 Atomic orbital electron populations 1.21610 0.95034 1.01585 1.01153 1.20461 0.96001 0.92810 1.02576 1.20364 0.99622 0.96952 0.92766 1.21246 0.99003 0.95683 0.97019 1.21491 0.98984 0.94257 0.98924 1.21297 0.99655 1.00874 0.91454 1.21594 1.00151 0.95070 0.99489 1.17659 1.00043 0.92387 0.85172 1.41658 1.25331 1.42951 1.23258 1.17252 0.92166 0.92293 0.92889 1.20459 0.92620 1.02425 1.01934 1.20899 1.00432 0.97694 0.97266 1.20922 0.95489 1.01318 0.96918 1.21104 0.97037 1.01551 1.03387 1.19421 0.88239 0.97160 0.94925 1.83841 1.30078 1.63399 1.36308 1.21723 1.08038 1.20429 0.97612 0.88720 1.26393 0.94829 0.97829 1.02883 1.70177 1.12243 1.32990 1.40551 0.84608 0.78873 0.77806 0.75449 1.17745 1.19655 1.19603 0.95454 0.91164 0.92374 0.89281 0.93052 0.83490 0.82692 0.83523 0.86879 0.76509 0.85613 0.83645 0.84396 0.86526 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.89 71.98 0.71 -3.38 16 2 C -0.08 -2.40 5.71 29.85 0.17 -2.23 16 3 C -0.10 -2.74 4.56 -19.73 -0.09 -2.83 16 4 C -0.11 -2.43 9.67 22.25 0.22 -2.21 16 5 C -0.12 -2.27 10.04 22.29 0.22 -2.04 16 6 C -0.11 -2.52 10.04 22.25 0.22 -2.29 16 7 C -0.14 -4.21 9.97 22.40 0.22 -3.99 16 8 C 0.14 4.68 4.60 38.23 0.18 4.86 16 9 N -0.70 -28.82 4.89 -180.12 -0.88 -29.71 16 10 C 0.15 6.62 5.21 38.31 0.20 6.82 16 11 C -0.15 -5.53 8.40 22.38 0.19 -5.35 16 12 C -0.14 -4.76 10.04 22.28 0.22 -4.54 16 13 C -0.13 -4.56 10.04 22.28 0.22 -4.34 16 14 C -0.21 -9.45 9.16 22.37 0.21 -9.24 16 15 C 0.05 2.71 6.67 22.70 0.15 2.86 16 16 O -0.23 -13.48 9.01 -22.87 -0.21 -13.69 16 17 C -0.40 -23.41 9.49 67.91 0.64 -22.77 16 18 H 0.10 5.17 5.20 -2.91 -0.02 5.15 16 19 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 20 N -0.92 -56.23 13.67 21.61 0.30 -55.94 16 21 Si 1.01 43.65 29.55 68.60 2.03 45.67 16 22 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 2.11 8.05 -2.39 -0.02 2.09 16 29 H 0.05 1.85 5.60 -2.39 -0.01 1.84 16 30 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.11 3.44 8.06 -2.91 -0.02 3.41 16 34 H 0.40 18.55 8.20 -92.71 -0.76 17.79 16 35 H 0.13 4.20 6.71 -2.91 -0.02 4.18 16 36 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 38 H 0.12 5.33 5.63 -2.91 -0.02 5.32 16 39 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -68.81 327.93 5.70 -63.11 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: 0.31 Total: 42.04 kcal Atomic # 6 Polarization: -55.65 SS G_CDS: 4.16 Total: -51.49 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -0.59 Total: -85.65 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.21 Total: -13.69 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.81 5.70 -63.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.253 kcal (2) G-P(sol) polarization free energy of solvation -68.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds