Wall clock time and date at job start Tue Mar 31 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38315 * 119.92435 * 2 1 4 4 C 1.38064 * 120.07654 * 179.74365 * 3 2 1 5 5 C 1.38959 * 119.92546 * 0.25989 * 4 3 2 6 6 N 1.39685 * 120.08225 * 179.97438 * 5 4 3 7 7 C 1.39781 * 120.00028 * 154.19487 * 6 5 4 8 8 C 1.38973 * 120.00816 * 328.85328 * 7 6 5 9 9 C 1.38001 * 119.99008 * 179.79102 * 8 7 6 10 10 C 1.38916 * 120.00812 * 0.49043 * 9 8 7 11 11 O 1.35786 * 119.98937 * 179.71955 * 10 9 8 12 12 C 1.34810 * 116.99712 * 186.86497 * 11 10 9 13 13 H 1.08005 * 120.00013 * 354.60900 * 12 11 10 14 14 C 1.38612 * 120.00055 * 174.60702 * 12 11 10 15 15 N 1.31589 * 120.00046 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 120.00085 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47014 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.46887 * 119.99909 * 16 14 12 19 19 H 1.48497 * 109.46745 * 239.99957 * 16 14 12 20 20 C 1.38904 * 120.01161 * 359.74188 * 10 9 8 21 21 C 1.37997 * 120.01306 * 0.02691 * 20 10 9 22 22 C 1.38924 * 119.84481 * 359.97438 * 5 4 3 23 23 C 1.38118 * 119.91801 * 359.97438 * 22 5 4 24 24 C 1.50703 * 119.95775 * 180.02562 * 23 22 5 25 25 H 1.09002 * 109.47166 * 89.99342 * 1 2 3 26 26 H 1.08997 * 109.47318 * 209.99872 * 1 2 3 27 27 H 1.09007 * 109.46758 * 330.00083 * 1 2 3 28 28 H 1.08004 * 119.95863 * 0.02925 * 3 2 1 29 29 H 1.08001 * 120.04142 * 180.28099 * 4 3 2 30 30 H 0.97004 * 119.99526 * 334.18969 * 6 5 4 31 31 H 1.07990 * 120.00470 * 0.02562 * 8 7 6 32 32 H 1.08005 * 119.99146 * 180.22869 * 9 8 7 33 33 H 0.96995 * 120.00029 * 180.02562 * 15 14 12 34 34 H 1.08007 * 119.99315 * 179.97438 * 20 10 9 35 35 H 1.08003 * 120.00640 * 179.97438 * 21 20 10 36 36 H 1.07997 * 120.03765 * 180.02562 * 22 5 4 37 37 H 1.08995 * 109.47114 * 89.99890 * 24 23 22 38 38 H 1.09003 * 109.46738 * 209.99940 * 24 23 22 39 39 H 1.08999 * 109.47212 * 329.99530 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1988 0.0000 4 6 3.5777 1.2024 0.0053 5 6 4.2741 0.0000 0.0053 6 7 5.6709 -0.0002 0.0101 7 6 6.3679 -1.0911 0.5372 8 6 5.8198 -1.8278 1.5804 9 6 6.5063 -2.9075 2.0977 10 6 7.7497 -3.2517 1.5826 11 8 8.4274 -4.3106 2.0956 12 6 9.6852 -4.5055 1.6514 13 1 10.0793 -3.8882 0.8577 14 6 10.4726 -5.4982 2.2135 15 7 9.9922 -6.2506 3.1802 16 14 12.2158 -5.7679 1.5985 17 1 12.5134 -4.7987 0.5134 18 1 13.1717 -5.5683 2.7171 19 1 12.3476 -7.1515 1.0755 20 6 8.2999 -2.5126 0.5431 21 6 7.6119 -1.4357 0.0222 22 6 3.5779 -1.2022 0.0003 23 6 2.1967 -1.1984 -0.0039 24 6 1.4405 -2.5020 -0.0087 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8901 0.5139 28 1 1.6551 2.1330 0.0005 29 1 4.1158 2.1388 0.0099 30 1 6.1572 0.7569 -0.3524 31 1 4.8551 -1.5578 1.9836 32 1 6.0787 -3.4822 2.9059 33 1 10.5434 -6.9450 3.5738 34 1 9.2668 -2.7802 0.1432 35 1 8.0400 -0.8609 -0.7857 36 1 4.1160 -2.1386 0.0007 37 1 1.2551 -2.8182 1.0178 38 1 0.4900 -2.3687 -0.5252 39 1 2.0296 -3.2618 -0.5222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212607894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:29 Heat of formation + Delta-G solvation = 19.100491 kcal Electronic energy + Delta-G solvation = -20805.266289 eV Core-core repulsion = 17678.017596 eV Total energy + Delta-G solvation = -3127.248693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99301 -38.87427 -37.14811 -34.90640 -32.52515 -32.14279 -31.35920 -30.22397 -27.87477 -27.30097 -25.71568 -24.88123 -22.46561 -21.87808 -21.01377 -20.27411 -18.01871 -17.29844 -16.81412 -16.30334 -15.22902 -15.16168 -14.53083 -14.33016 -14.24726 -13.82593 -13.73459 -13.40109 -13.00552 -12.85513 -12.83534 -12.76902 -12.38809 -12.29191 -12.01351 -11.70017 -11.53814 -11.46987 -11.10007 -11.05029 -10.83060 -10.68490 -10.43734 -9.87902 -9.34696 -8.82045 -8.61737 -8.27337 -7.86528 -6.55295 -6.43929 -4.01692 1.47668 1.52340 2.11053 2.39672 3.12065 3.13711 3.19095 3.65253 3.87763 3.97030 4.54799 4.86438 4.89723 5.08402 5.13609 5.25300 5.29790 5.35171 5.46153 5.54808 5.55183 5.64756 5.67277 5.74958 5.83102 5.89391 5.98039 6.12227 6.14662 6.24836 6.40938 6.52178 6.55478 6.76752 6.77746 6.85459 7.01769 7.09048 7.22690 7.35132 7.53921 7.88295 8.00293 8.03725 9.01605 9.72267 10.74117 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034800 B = 0.003219 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.398581 B = 8696.136195 C = 9229.564198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.143 4.143 3 C -0.080 4.080 4 C -0.189 4.189 5 C 0.203 3.797 6 N -0.683 5.683 7 C 0.071 3.929 8 C -0.106 4.106 9 C -0.165 4.165 10 C 0.136 3.864 11 O -0.180 6.180 12 C -0.390 4.390 13 H 0.091 0.909 14 C 0.038 3.962 15 N -0.863 5.863 16 Si 0.940 3.060 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.208 4.208 21 C -0.107 4.107 22 C -0.171 4.171 23 C -0.049 4.049 24 C -0.117 4.117 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.401 0.599 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.269 0.731 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 11.880 -6.814 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.144 4.144 3 C -0.099 4.099 4 C -0.211 4.211 5 C 0.103 3.897 6 N -0.305 5.305 7 C -0.023 4.023 8 C -0.127 4.127 9 C -0.185 4.185 10 C 0.082 3.918 11 O -0.084 6.084 12 C -0.466 4.466 13 H 0.109 0.891 14 C -0.166 4.166 15 N -0.499 5.499 16 Si 0.765 3.235 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.228 4.228 21 C -0.128 4.128 22 C -0.192 4.192 23 C -0.050 4.050 24 C -0.173 4.173 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.236 0.764 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.079 0.921 34 H 0.148 0.852 35 H 0.127 0.873 36 H 0.147 0.853 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.529 11.378 -6.443 18.815 hybrid contribution 1.267 0.290 -0.494 1.391 sum -12.262 11.667 -6.938 18.292 Atomic orbital electron populations 1.20685 0.91814 1.02189 1.01556 1.19515 0.95573 0.92583 1.06763 1.20669 0.93295 0.97119 0.98816 1.20658 0.94335 0.96244 1.09834 1.17768 0.83358 0.93572 0.95050 1.41883 1.02188 1.20335 1.66127 1.17261 0.94279 0.93140 0.97657 1.20515 1.00049 0.96652 0.95487 1.20081 0.94972 0.99958 1.03506 1.19338 0.92111 0.87978 0.92365 1.83985 1.26595 1.38399 1.59389 1.21336 0.86838 1.18872 1.19587 0.89136 1.25271 0.99781 0.95609 0.95920 1.70058 1.36951 1.19359 1.23506 0.85662 0.80559 0.78637 0.78649 1.19151 1.20169 1.20175 1.21004 1.02407 0.98574 1.00776 1.20464 0.94845 0.97837 0.99627 1.20903 0.93471 0.97534 1.07314 1.19536 0.92969 0.94707 0.97771 1.20836 0.99795 0.94343 1.02369 0.92013 0.91778 0.92222 0.86496 0.86477 0.76412 0.86538 0.86162 0.92116 0.85207 0.87272 0.85266 0.91083 0.91519 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.18 36.01 0.33 -0.59 16 2 C -0.14 -1.65 5.88 -104.58 -0.62 -2.27 16 3 C -0.08 -0.91 9.69 -39.62 -0.38 -1.29 16 4 C -0.19 -2.32 9.94 -39.38 -0.39 -2.71 16 5 C 0.20 2.88 6.05 -83.76 -0.51 2.37 16 6 N -0.68 -9.84 5.47 -8.37 -0.05 -9.88 16 7 C 0.07 1.23 5.94 -83.69 -0.50 0.73 16 8 C -0.11 -1.95 7.73 -39.40 -0.30 -2.25 16 9 C -0.17 -3.48 9.98 -39.42 -0.39 -3.87 16 10 C 0.14 3.23 6.64 -39.08 -0.26 2.97 16 11 O -0.18 -5.09 9.75 -0.01 0.00 -5.09 16 12 C -0.39 -10.82 9.48 30.87 0.29 -10.52 16 13 H 0.09 2.32 5.21 -52.48 -0.27 2.05 16 14 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 15 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 16 Si 0.94 20.45 29.55 -169.99 -5.02 15.42 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 C -0.21 -4.43 9.16 -39.42 -0.36 -4.79 16 21 C -0.11 -1.93 9.95 -39.40 -0.39 -2.32 16 22 C -0.17 -2.48 7.50 -39.37 -0.30 -2.77 16 23 C -0.05 -0.62 5.88 -104.65 -0.62 -1.24 16 24 C -0.12 -1.22 9.18 36.01 0.33 -0.89 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.52 6.71 -51.93 -0.35 0.17 16 27 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.40 4.84 8.89 -40.82 -0.36 4.47 16 31 H 0.12 1.98 6.53 -52.49 -0.34 1.64 16 32 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.13 2.76 5.65 -52.48 -0.30 2.47 16 35 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 36 H 0.13 2.05 6.32 -52.49 -0.33 1.72 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.58 6.71 -51.93 -0.35 0.23 16 39 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -30.45 326.46 -8.36 -38.81 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.82 Total: 8.83 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -4.16 Total: -28.49 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.71 Total: -34.40 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: 0.00 Total: -5.09 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.45 -8.36 -38.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212607894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.909 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds