Wall clock time and date at job start Tue Mar 31 2020 05:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38315 * 119.92435 * 2 1 4 4 C 1.38064 * 120.07654 * 179.74365 * 3 2 1 5 5 C 1.38959 * 119.92546 * 0.25989 * 4 3 2 6 6 N 1.39685 * 120.08225 * 179.97438 * 5 4 3 7 7 C 1.39781 * 120.00028 * 154.19487 * 6 5 4 8 8 C 1.38973 * 120.00816 * 328.85328 * 7 6 5 9 9 C 1.38001 * 119.99008 * 179.79102 * 8 7 6 10 10 C 1.38916 * 120.00812 * 0.49043 * 9 8 7 11 11 O 1.35786 * 119.98937 * 179.71955 * 10 9 8 12 12 C 1.34810 * 116.99712 * 186.86497 * 11 10 9 13 13 H 1.08005 * 120.00013 * 354.60900 * 12 11 10 14 14 C 1.38612 * 120.00055 * 174.60702 * 12 11 10 15 15 N 1.31589 * 120.00046 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 120.00085 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47014 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.46887 * 119.99909 * 16 14 12 19 19 H 1.48497 * 109.46745 * 239.99957 * 16 14 12 20 20 C 1.38904 * 120.01161 * 359.74188 * 10 9 8 21 21 C 1.37997 * 120.01306 * 0.02691 * 20 10 9 22 22 C 1.38924 * 119.84481 * 359.97438 * 5 4 3 23 23 C 1.38118 * 119.91801 * 359.97438 * 22 5 4 24 24 C 1.50703 * 119.95775 * 180.02562 * 23 22 5 25 25 H 1.09002 * 109.47166 * 89.99342 * 1 2 3 26 26 H 1.08997 * 109.47318 * 209.99872 * 1 2 3 27 27 H 1.09007 * 109.46758 * 330.00083 * 1 2 3 28 28 H 1.08004 * 119.95863 * 0.02925 * 3 2 1 29 29 H 1.08001 * 120.04142 * 180.28099 * 4 3 2 30 30 H 0.97004 * 119.99526 * 334.18969 * 6 5 4 31 31 H 1.07990 * 120.00470 * 0.02562 * 8 7 6 32 32 H 1.08005 * 119.99146 * 180.22869 * 9 8 7 33 33 H 0.96995 * 120.00029 * 180.02562 * 15 14 12 34 34 H 1.08007 * 119.99315 * 179.97438 * 20 10 9 35 35 H 1.08003 * 120.00640 * 179.97438 * 21 20 10 36 36 H 1.07997 * 120.03765 * 180.02562 * 22 5 4 37 37 H 1.08995 * 109.47114 * 89.99890 * 24 23 22 38 38 H 1.09003 * 109.46738 * 209.99940 * 24 23 22 39 39 H 1.08999 * 109.47212 * 329.99530 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1988 0.0000 4 6 3.5777 1.2024 0.0053 5 6 4.2741 0.0000 0.0053 6 7 5.6709 -0.0002 0.0101 7 6 6.3679 -1.0911 0.5372 8 6 5.8198 -1.8278 1.5804 9 6 6.5063 -2.9075 2.0977 10 6 7.7497 -3.2517 1.5826 11 8 8.4274 -4.3106 2.0956 12 6 9.6852 -4.5055 1.6514 13 1 10.0793 -3.8882 0.8577 14 6 10.4726 -5.4982 2.2135 15 7 9.9922 -6.2506 3.1802 16 14 12.2158 -5.7679 1.5985 17 1 12.5134 -4.7987 0.5134 18 1 13.1717 -5.5683 2.7171 19 1 12.3476 -7.1515 1.0755 20 6 8.2999 -2.5126 0.5431 21 6 7.6119 -1.4357 0.0222 22 6 3.5779 -1.2022 0.0003 23 6 2.1967 -1.1984 -0.0039 24 6 1.4405 -2.5020 -0.0087 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8901 0.5139 28 1 1.6551 2.1330 0.0005 29 1 4.1158 2.1388 0.0099 30 1 6.1572 0.7569 -0.3524 31 1 4.8551 -1.5578 1.9836 32 1 6.0787 -3.4822 2.9059 33 1 10.5434 -6.9450 3.5738 34 1 9.2668 -2.7802 0.1432 35 1 8.0400 -0.8609 -0.7857 36 1 4.1160 -2.1386 0.0007 37 1 1.2551 -2.8182 1.0178 38 1 0.4900 -2.3687 -0.5252 39 1 2.0296 -3.2618 -0.5222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212607894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:28 Heat of formation + Delta-G solvation = 2.550762 kcal Electronic energy + Delta-G solvation = -20805.983939 eV Core-core repulsion = 17678.017596 eV Total energy + Delta-G solvation = -3127.966343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24858 -40.35685 -38.67364 -36.25446 -34.23543 -33.35740 -32.50416 -31.72489 -29.33885 -28.23082 -27.38046 -26.17644 -23.89371 -23.19414 -22.35008 -21.41529 -19.83384 -18.95647 -18.09991 -17.68871 -16.44614 -16.29696 -16.08142 -15.89036 -15.55816 -15.36524 -14.98727 -14.58672 -14.52581 -14.28028 -13.97406 -13.71945 -13.54996 -13.41644 -13.35282 -13.03887 -12.88672 -12.77061 -12.60230 -12.41223 -12.09457 -12.00853 -11.75654 -11.28127 -11.10005 -10.65074 -9.87817 -9.60148 -9.21353 -8.44422 -7.95323 -6.10109 0.36142 0.47247 0.54706 0.92611 1.36385 1.44650 1.54507 2.19132 2.44899 2.77472 2.94607 3.17023 3.54700 3.93839 4.03879 4.05869 4.08647 4.23820 4.40131 4.45512 4.47948 4.55425 4.67901 4.76355 4.81271 4.91403 4.95282 4.98142 5.04204 5.07906 5.15770 5.25428 5.31813 5.39923 5.45934 5.53392 5.60445 5.66947 5.85486 5.90132 6.04443 6.13599 6.56765 6.87718 7.00697 7.82658 8.79419 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034800 B = 0.003219 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.398581 B = 8696.136195 C = 9229.564198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.140 4.140 3 C -0.083 4.083 4 C -0.183 4.183 5 C 0.179 3.821 6 N -0.677 5.677 7 C 0.104 3.896 8 C -0.104 4.104 9 C -0.171 4.171 10 C 0.093 3.907 11 O -0.234 6.234 12 C -0.409 4.409 13 H 0.102 0.898 14 C -0.025 4.025 15 N -0.923 5.923 16 Si 1.018 2.982 17 H -0.250 1.250 18 H -0.270 1.270 19 H -0.270 1.270 20 C -0.208 4.208 21 C -0.107 4.107 22 C -0.190 4.190 23 C -0.062 4.062 24 C -0.117 4.117 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.139 0.861 30 H 0.415 0.585 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.271 0.729 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.090 14.970 -8.631 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.142 4.142 3 C -0.101 4.101 4 C -0.205 4.205 5 C 0.080 3.920 6 N -0.302 5.302 7 C 0.008 3.992 8 C -0.125 4.125 9 C -0.190 4.190 10 C 0.043 3.957 11 O -0.141 6.141 12 C -0.486 4.486 13 H 0.120 0.880 14 C -0.222 4.222 15 N -0.562 5.562 16 Si 0.838 3.162 17 H -0.174 1.174 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.228 4.228 21 C -0.128 4.128 22 C -0.212 4.212 23 C -0.063 4.063 24 C -0.173 4.173 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.164 0.836 29 H 0.157 0.843 30 H 0.253 0.747 31 H 0.149 0.851 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.164 0.836 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.109 14.546 -8.301 22.557 hybrid contribution 1.318 -0.356 -0.042 1.366 sum -13.791 14.190 -8.343 21.475 Atomic orbital electron populations 1.20760 0.89585 1.03304 1.02652 1.19944 0.97312 0.92163 1.04747 1.21084 0.93134 0.98312 0.97612 1.20941 0.94941 0.96243 1.08329 1.17930 0.82967 0.94278 0.96843 1.41782 1.02551 1.19764 1.66105 1.17367 0.93598 0.92530 0.95708 1.20620 1.00377 0.95858 0.95629 1.20225 0.94458 1.00745 1.03612 1.19786 0.93168 0.88644 0.94135 1.83947 1.27392 1.41113 1.61676 1.21843 0.87297 1.19378 1.20052 0.88032 1.26566 1.04567 0.95047 0.96034 1.70207 1.39115 1.20907 1.25939 0.84535 0.74250 0.78947 0.78512 1.17356 1.19481 1.19481 1.21094 1.02451 0.99152 1.00088 1.20737 0.94898 0.97001 1.00135 1.20895 0.94507 0.96921 1.08883 1.19815 0.92517 0.96236 0.97742 1.20874 1.00348 0.93262 1.02840 0.90793 0.91210 0.90695 0.83555 0.84349 0.74688 0.85058 0.86619 0.91961 0.85620 0.83647 0.87528 0.90654 0.89519 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.18 71.24 0.65 -0.78 16 2 C -0.14 -2.78 5.88 -19.84 -0.12 -2.89 16 3 C -0.08 -1.55 9.69 22.25 0.22 -1.33 16 4 C -0.18 -3.83 9.94 22.40 0.22 -3.61 16 5 C 0.18 4.63 6.05 38.23 0.23 4.86 16 6 N -0.68 -17.71 5.47 -180.39 -0.99 -18.70 16 7 C 0.10 3.45 5.94 38.23 0.23 3.68 16 8 C -0.10 -3.79 7.73 22.39 0.17 -3.62 16 9 C -0.17 -7.48 9.98 22.38 0.22 -7.26 16 10 C 0.09 4.66 6.64 22.59 0.15 4.81 16 11 O -0.23 -14.18 9.75 -22.94 -0.22 -14.40 16 12 C -0.41 -23.87 9.48 67.91 0.64 -23.23 16 13 H 0.10 5.40 5.21 -2.91 -0.02 5.39 16 14 C -0.03 -1.44 5.49 84.82 0.47 -0.97 16 15 N -0.92 -57.09 13.67 21.61 0.30 -56.79 16 16 Si 1.02 43.02 29.55 68.60 2.03 45.04 16 17 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 20 C -0.21 -9.00 9.16 22.37 0.20 -8.80 16 21 C -0.11 -3.69 9.95 22.39 0.22 -3.47 16 22 C -0.19 -5.31 7.50 22.41 0.17 -5.14 16 23 C -0.06 -1.47 5.88 -19.89 -0.12 -1.59 16 24 C -0.12 -2.27 9.18 71.24 0.65 -1.61 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.88 6.71 -2.39 -0.02 0.86 16 27 H 0.07 0.81 8.08 -2.38 -0.02 0.79 16 28 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 29 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.42 8.56 8.89 -92.71 -0.82 7.74 16 31 H 0.13 4.39 6.53 -2.92 -0.02 4.37 16 32 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 33 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.13 5.46 5.65 -2.91 -0.02 5.44 16 35 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.11 3.40 6.32 -2.91 -0.02 3.38 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.30 6.71 -2.39 -0.02 1.29 16 39 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 Total: -1.00 -70.60 326.46 5.59 -65.01 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.25 Total: 30.78 kcal Atomic # 6 Polarization: -55.17 SS G_CDS: 4.22 Total: -50.95 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -0.69 Total: -75.49 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.22 Total: -14.40 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -70.60 5.59 -65.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212607894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.563 kcal (2) G-P(sol) polarization free energy of solvation -70.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds