Wall clock time and date at job start Tue Mar 31 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47338 * 2 1 4 4 C 1.38322 * 119.96327 * 89.99687 * 3 2 1 5 5 C 1.38272 * 120.15597 * 179.97438 * 4 3 2 6 6 C 1.38114 * 120.07676 * 0.05164 * 5 4 3 7 7 C 1.38917 * 119.92285 * 359.97438 * 6 5 4 8 8 N 1.39683 * 120.07793 * 179.97438 * 7 6 5 9 9 C 1.39796 * 119.99646 * 328.85223 * 8 7 6 10 10 C 1.38977 * 120.00458 * 333.87032 * 9 8 7 11 11 C 1.37999 * 119.98549 * 179.72507 * 10 9 8 12 12 C 1.38908 * 120.01070 * 0.54925 * 11 10 9 13 13 O 1.35787 * 119.99355 * 179.69834 * 12 11 10 14 14 C 1.34814 * 116.99937 * 186.85100 * 13 12 11 15 15 H 1.08000 * 119.99890 * 354.60884 * 14 13 12 16 16 C 1.38618 * 119.99509 * 174.60237 * 14 13 12 17 17 N 1.31591 * 119.99533 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00428 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46906 * 89.99763 * 18 16 14 20 20 H 1.48497 * 109.46889 * 209.99633 * 18 16 14 21 21 H 1.48503 * 109.46958 * 330.00035 * 18 16 14 22 22 C 1.38914 * 120.01521 * 359.72668 * 12 11 10 23 23 C 1.37994 * 120.00482 * 359.97438 * 22 12 11 24 24 C 1.38077 * 119.96566 * 270.30333 * 3 2 1 25 25 H 1.09005 * 109.46639 * 300.00033 * 1 2 3 26 26 H 1.08998 * 109.47092 * 59.99721 * 1 2 3 27 27 H 1.08994 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47028 * 240.00459 * 2 1 3 29 29 H 1.08998 * 109.47092 * 120.00279 * 2 1 3 30 30 H 1.07995 * 119.91857 * 0.03079 * 4 3 2 31 31 H 1.07995 * 119.95840 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.03901 * 179.97438 * 6 5 4 33 33 H 0.96998 * 120.00121 * 149.12647 * 8 7 6 34 34 H 1.07991 * 120.00974 * 359.97438 * 10 9 8 35 35 H 1.08007 * 119.99363 * 180.29730 * 11 10 9 36 36 H 0.97003 * 119.99611 * 180.02562 * 17 16 14 37 37 H 1.07994 * 119.99937 * 179.97438 * 22 12 11 38 38 H 1.08002 * 120.00175 * 179.97438 * 23 22 12 39 39 H 1.07999 * 120.03471 * 359.97206 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0721 1.1983 5 6 2.7241 3.3756 1.2030 6 6 2.9558 4.0321 0.0102 7 6 2.7251 3.3812 -1.1952 8 7 2.9578 4.0423 -2.4035 9 6 2.7825 5.4266 -2.4878 10 6 1.9025 6.0695 -1.6254 11 6 1.7340 7.4369 -1.7052 12 6 2.4352 8.1690 -2.6548 13 8 2.2645 9.5136 -2.7371 14 6 2.8625 10.1446 -3.7675 15 1 3.5156 9.5966 -4.4305 16 6 2.6388 11.4966 -3.9761 17 7 3.2220 12.1123 -4.9822 18 14 1.5095 12.4444 -2.8291 19 1 2.3020 13.0028 -1.7042 20 1 0.8618 13.5523 -3.5763 21 1 0.4670 11.5316 -2.2950 22 6 3.3105 7.5259 -3.5208 23 6 3.4841 6.1595 -3.4375 24 6 2.2564 2.0731 -1.1962 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0824 1.5611 2.1325 31 1 2.9032 3.8809 2.1405 32 1 3.3158 5.0503 0.0145 33 1 3.2371 3.5403 -3.1851 34 1 1.3537 5.4998 -0.8903 35 1 1.0538 7.9373 -1.0318 36 1 3.0658 13.0586 -5.1280 37 1 3.8552 8.0954 -4.2593 38 1 4.1644 5.6595 -4.1111 39 1 2.0721 1.5655 -2.1315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212609038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:56 Heat of formation + Delta-G solvation = 20.588201 kcal Electronic energy + Delta-G solvation = -20638.641558 eV Core-core repulsion = 17511.457377 eV Total energy + Delta-G solvation = -3127.184181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01308 -38.97052 -37.25487 -34.97688 -33.53589 -32.32252 -30.50427 -30.19564 -28.96021 -27.39580 -25.07496 -24.04785 -22.74153 -21.84333 -21.43583 -20.14255 -17.96730 -17.40806 -17.00710 -16.59024 -15.86839 -15.22962 -14.74573 -14.29882 -14.17474 -13.93873 -13.76127 -13.63886 -13.51471 -13.13080 -12.81446 -12.61362 -12.31703 -12.20755 -11.95822 -11.76678 -11.69407 -11.49209 -11.09544 -10.98266 -10.84379 -10.75192 -10.16947 -10.02301 -9.40025 -8.87380 -8.73874 -8.36209 -8.10705 -6.65846 -6.40326 -4.05782 1.40610 1.43416 2.01793 2.31851 3.23489 3.26125 3.40969 3.56250 3.83308 4.24746 4.46822 4.64414 4.77813 4.87295 5.03328 5.11871 5.17078 5.21650 5.32794 5.43286 5.46512 5.53164 5.58021 5.61374 5.70543 5.87001 5.96785 6.03561 6.05309 6.11705 6.29635 6.45897 6.51098 6.65300 6.68415 6.72702 6.89284 7.01667 7.20923 7.38624 7.70218 7.82802 7.91883 8.05894 8.95180 9.58145 10.67495 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036327 B = 0.003081 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.597510 B = 9085.902734 C = 9396.658659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.051 4.051 4 C -0.165 4.165 5 C -0.084 4.084 6 C -0.172 4.172 7 C 0.202 3.798 8 N -0.685 5.685 9 C 0.086 3.914 10 C -0.116 4.116 11 C -0.162 4.162 12 C 0.137 3.863 13 O -0.220 6.220 14 C -0.388 4.388 15 H 0.105 0.895 16 C 0.062 3.938 17 N -0.882 5.882 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.191 4.191 23 C -0.113 4.113 24 C -0.177 4.177 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.402 0.598 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.279 0.721 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 -20.723 9.172 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.052 4.052 4 C -0.185 4.185 5 C -0.102 4.102 6 C -0.193 4.193 7 C 0.102 3.898 8 N -0.309 5.309 9 C -0.008 4.008 10 C -0.136 4.136 11 C -0.182 4.182 12 C 0.085 3.915 13 O -0.126 6.126 14 C -0.463 4.463 15 H 0.122 0.878 16 C -0.141 4.141 17 N -0.520 5.520 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.183 1.183 22 C -0.211 4.211 23 C -0.134 4.134 24 C -0.199 4.199 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.237 0.763 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.130 0.870 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.588 -20.227 9.233 22.385 hybrid contribution -0.150 0.381 -0.121 0.427 sum -2.738 -19.846 9.112 22.009 Atomic orbital electron populations 1.21741 0.94769 1.01460 1.02402 1.20528 0.96169 0.92865 1.02545 1.19589 0.97402 0.95545 0.92679 1.20799 1.05166 0.95427 0.97113 1.20924 0.97504 0.94366 0.97432 1.21070 1.05298 1.01705 0.91253 1.17738 0.94214 0.91593 0.86266 1.41900 1.74184 1.04938 1.09834 1.17344 1.00164 0.82364 1.00961 1.20487 0.98508 0.93770 1.00878 1.20064 1.03629 0.92707 1.01753 1.19063 0.94169 0.83981 0.94263 1.83576 1.67189 1.15097 1.46700 1.20736 1.26693 0.93435 1.05470 0.87751 1.24458 0.97349 0.95735 0.96552 1.69665 1.42612 1.11440 1.28325 0.86174 0.81191 0.79227 0.80278 1.19926 1.20884 1.18344 1.21118 1.02851 0.93943 1.03155 1.20465 0.99619 0.93573 0.99792 1.20627 1.06067 0.95261 0.97960 0.92497 0.92487 0.92612 0.91269 0.91168 0.86705 0.86200 0.85425 0.76262 0.86314 0.86190 0.91114 0.84592 0.86982 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 37.16 0.37 -0.74 16 2 C -0.08 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.05 -0.54 5.13 -104.65 -0.54 -1.08 16 4 C -0.17 -1.76 9.70 -39.54 -0.38 -2.15 16 5 C -0.08 -0.97 10.04 -39.61 -0.40 -1.36 16 6 C -0.17 -2.31 7.75 -39.38 -0.31 -2.61 16 7 C 0.20 2.68 5.93 -83.76 -0.50 2.19 16 8 N -0.69 -9.39 5.47 -8.37 -0.05 -9.44 16 9 C 0.09 1.44 6.04 -83.68 -0.51 0.93 16 10 C -0.12 -2.00 7.85 -39.40 -0.31 -2.31 16 11 C -0.16 -3.17 9.98 -39.42 -0.39 -3.57 16 12 C 0.14 3.11 6.65 -39.08 -0.26 2.85 16 13 O -0.22 -5.75 8.58 -0.02 0.00 -5.75 16 14 C -0.39 -10.85 9.94 30.87 0.31 -10.54 16 15 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 16 C 0.06 1.73 5.49 -17.51 -0.10 1.64 16 17 N -0.88 -25.46 13.97 55.48 0.77 -24.69 16 18 Si 0.91 21.66 28.62 -169.99 -4.86 16.80 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.19 -4.02 9.16 -39.42 -0.36 -4.38 16 23 C -0.11 -2.00 9.94 -39.40 -0.39 -2.39 16 24 C -0.18 -2.06 9.61 -39.38 -0.38 -2.44 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.86 6.55 -52.49 -0.34 1.51 16 33 H 0.40 4.63 8.89 -40.82 -0.36 4.27 16 34 H 0.12 1.89 6.34 -52.49 -0.33 1.55 16 35 H 0.12 2.20 8.06 -52.48 -0.42 1.77 16 36 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.14 3.00 5.65 -52.49 -0.30 2.70 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -29.35 329.19 -8.46 -37.81 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.98 Total: 7.11 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -4.31 Total: -26.80 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.73 Total: -34.12 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: 0.00 Total: -5.75 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.86 Total: 16.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.35 -8.46 -37.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212609038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.397 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds