Wall clock time and date at job start Tue Mar 31 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47338 * 2 1 4 4 C 1.38322 * 119.96327 * 89.99687 * 3 2 1 5 5 C 1.38272 * 120.15597 * 179.97438 * 4 3 2 6 6 C 1.38114 * 120.07676 * 0.05164 * 5 4 3 7 7 C 1.38917 * 119.92285 * 359.97438 * 6 5 4 8 8 N 1.39683 * 120.07793 * 179.97438 * 7 6 5 9 9 C 1.39796 * 119.99646 * 328.85223 * 8 7 6 10 10 C 1.38977 * 120.00458 * 333.87032 * 9 8 7 11 11 C 1.37999 * 119.98549 * 179.72507 * 10 9 8 12 12 C 1.38908 * 120.01070 * 0.54925 * 11 10 9 13 13 O 1.35787 * 119.99355 * 179.69834 * 12 11 10 14 14 C 1.34814 * 116.99937 * 186.85100 * 13 12 11 15 15 H 1.08000 * 119.99890 * 354.60884 * 14 13 12 16 16 C 1.38618 * 119.99509 * 174.60237 * 14 13 12 17 17 N 1.31591 * 119.99533 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00428 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46906 * 89.99763 * 18 16 14 20 20 H 1.48497 * 109.46889 * 209.99633 * 18 16 14 21 21 H 1.48503 * 109.46958 * 330.00035 * 18 16 14 22 22 C 1.38914 * 120.01521 * 359.72668 * 12 11 10 23 23 C 1.37994 * 120.00482 * 359.97438 * 22 12 11 24 24 C 1.38077 * 119.96566 * 270.30333 * 3 2 1 25 25 H 1.09005 * 109.46639 * 300.00033 * 1 2 3 26 26 H 1.08998 * 109.47092 * 59.99721 * 1 2 3 27 27 H 1.08994 * 109.47119 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47028 * 240.00459 * 2 1 3 29 29 H 1.08998 * 109.47092 * 120.00279 * 2 1 3 30 30 H 1.07995 * 119.91857 * 0.03079 * 4 3 2 31 31 H 1.07995 * 119.95840 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.03901 * 179.97438 * 6 5 4 33 33 H 0.96998 * 120.00121 * 149.12647 * 8 7 6 34 34 H 1.07991 * 120.00974 * 359.97438 * 10 9 8 35 35 H 1.08007 * 119.99363 * 180.29730 * 11 10 9 36 36 H 0.97003 * 119.99611 * 180.02562 * 17 16 14 37 37 H 1.07994 * 119.99937 * 179.97438 * 22 12 11 38 38 H 1.08002 * 120.00175 * 179.97438 * 23 22 12 39 39 H 1.07999 * 120.03471 * 359.97206 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0721 1.1983 5 6 2.7241 3.3756 1.2030 6 6 2.9558 4.0321 0.0102 7 6 2.7251 3.3812 -1.1952 8 7 2.9578 4.0423 -2.4035 9 6 2.7825 5.4266 -2.4878 10 6 1.9025 6.0695 -1.6254 11 6 1.7340 7.4369 -1.7052 12 6 2.4352 8.1690 -2.6548 13 8 2.2645 9.5136 -2.7371 14 6 2.8625 10.1446 -3.7675 15 1 3.5156 9.5966 -4.4305 16 6 2.6388 11.4966 -3.9761 17 7 3.2220 12.1123 -4.9822 18 14 1.5095 12.4444 -2.8291 19 1 2.3020 13.0028 -1.7042 20 1 0.8618 13.5523 -3.5763 21 1 0.4670 11.5316 -2.2950 22 6 3.3105 7.5259 -3.5208 23 6 3.4841 6.1595 -3.4375 24 6 2.2564 2.0731 -1.1962 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0824 1.5611 2.1325 31 1 2.9032 3.8809 2.1405 32 1 3.3158 5.0503 0.0145 33 1 3.2371 3.5403 -3.1851 34 1 1.3537 5.4998 -0.8903 35 1 1.0538 7.9373 -1.0318 36 1 3.0658 13.0586 -5.1280 37 1 3.8552 8.0954 -4.2593 38 1 4.1644 5.6595 -4.1111 39 1 2.0721 1.5655 -2.1315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212609038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:55 Heat of formation + Delta-G solvation = 5.574529 kcal Electronic energy + Delta-G solvation = -20639.292599 eV Core-core repulsion = 17511.457377 eV Total energy + Delta-G solvation = -3127.835222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26342 -40.37005 -38.70379 -36.19891 -34.51353 -34.25436 -32.00212 -31.28367 -29.90824 -28.82375 -26.94367 -24.84848 -24.01386 -23.13458 -22.68178 -21.26251 -19.80053 -19.11831 -18.21323 -17.79827 -16.94823 -16.42024 -16.17374 -15.76168 -15.58044 -15.47167 -15.03662 -14.68812 -14.45454 -14.28543 -14.25947 -14.05154 -13.85810 -13.61355 -13.28068 -12.93360 -12.71764 -12.64929 -12.53570 -12.29872 -11.96663 -11.80804 -11.67248 -11.35636 -11.21371 -10.78316 -9.90080 -9.63882 -9.39892 -8.47214 -8.03012 -6.16981 0.33640 0.45274 0.53043 0.91295 1.33040 1.37445 1.53348 2.30218 2.40952 2.74449 2.93246 3.06597 3.22360 3.88684 4.00739 4.04780 4.07455 4.26710 4.36534 4.46261 4.48641 4.54125 4.58762 4.64653 4.73375 4.78919 4.88390 5.10912 5.13958 5.14387 5.21361 5.22262 5.36201 5.43472 5.51768 5.54085 5.65205 5.73994 5.77906 5.80373 6.01868 6.13806 6.54963 6.83252 6.87804 7.63736 8.64600 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036327 B = 0.003081 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.597510 B = 9085.902734 C = 9396.658659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.053 4.053 4 C -0.161 4.161 5 C -0.088 4.088 6 C -0.190 4.190 7 C 0.180 3.820 8 N -0.680 5.680 9 C 0.119 3.881 10 C -0.114 4.114 11 C -0.154 4.154 12 C 0.094 3.906 13 O -0.247 6.247 14 C -0.395 4.395 15 H 0.082 0.918 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.970 3.030 19 H -0.267 1.267 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.199 4.199 23 C -0.117 4.117 24 C -0.175 4.175 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.415 0.585 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.283 0.717 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 -24.090 11.194 26.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.054 4.054 4 C -0.180 4.180 5 C -0.107 4.107 6 C -0.211 4.211 7 C 0.081 3.919 8 N -0.305 5.305 9 C 0.023 3.977 10 C -0.135 4.135 11 C -0.174 4.174 12 C 0.045 3.955 13 O -0.156 6.156 14 C -0.471 4.471 15 H 0.099 0.901 16 C -0.190 4.190 17 N -0.568 5.568 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.194 1.194 21 H -0.187 1.187 22 C -0.219 4.219 23 C -0.138 4.138 24 C -0.197 4.197 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.129 0.871 33 H 0.252 0.748 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.093 0.907 37 H 0.133 0.867 38 H 0.159 0.841 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.632 -23.685 11.279 26.483 hybrid contribution 0.207 0.917 -0.605 1.117 sum -3.425 -22.768 10.674 25.378 Atomic orbital electron populations 1.21734 0.94395 1.02354 1.01797 1.20589 0.96345 0.91265 1.03763 1.19959 0.96414 0.96783 0.92248 1.21153 1.03589 0.95019 0.98283 1.21166 0.97116 0.94919 0.97494 1.21079 1.06457 1.01288 0.92270 1.17889 0.95781 0.92459 0.85732 1.41833 1.74178 1.03550 1.10916 1.17439 0.97684 0.83852 0.98775 1.20675 0.98560 0.92879 1.01341 1.20283 1.02891 0.93510 1.00708 1.19516 0.96311 0.83311 0.96400 1.83514 1.68603 1.16817 1.46622 1.20698 1.26614 0.93901 1.05924 0.90083 1.25259 0.99000 0.96572 0.98186 1.69749 1.44742 1.12025 1.30264 0.85220 0.79171 0.77916 0.78455 1.19157 1.19421 1.18652 1.21106 1.02686 0.95430 1.02646 1.20649 1.00198 0.92216 1.00768 1.20844 1.05145 0.94499 0.99194 0.92777 0.93415 0.91059 0.90386 0.89732 0.84360 0.84573 0.87093 0.74780 0.84301 0.85075 0.90704 0.86724 0.84146 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.90 71.98 0.71 -0.99 16 2 C -0.08 -1.00 6.06 29.85 0.18 -0.82 16 3 C -0.05 -0.93 5.13 -19.88 -0.10 -1.03 16 4 C -0.16 -2.84 9.70 22.30 0.22 -2.62 16 5 C -0.09 -1.79 10.04 22.25 0.22 -1.57 16 6 C -0.19 -4.68 7.75 22.40 0.17 -4.51 16 7 C 0.18 4.30 5.93 38.22 0.23 4.53 16 8 N -0.68 -16.88 5.47 -180.39 -0.99 -17.87 16 9 C 0.12 3.75 6.04 38.22 0.23 3.98 16 10 C -0.11 -3.75 7.85 22.39 0.18 -3.58 16 11 C -0.15 -6.02 9.98 22.37 0.22 -5.79 16 12 C 0.09 4.39 6.65 22.59 0.15 4.54 16 13 O -0.25 -13.49 8.58 -22.99 -0.20 -13.69 16 14 C -0.39 -23.34 9.94 67.91 0.68 -22.66 16 15 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 16 C 0.01 0.44 5.49 84.82 0.47 0.91 16 17 N -0.93 -55.75 13.97 21.61 0.30 -55.45 16 18 Si 0.97 45.85 28.62 68.60 1.96 47.81 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 22 C -0.20 -8.67 9.16 22.37 0.20 -8.47 16 23 C -0.12 -4.04 9.94 22.39 0.22 -3.82 16 24 C -0.18 -3.50 9.61 22.40 0.22 -3.28 16 25 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 28 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 29 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 30 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.11 3.08 6.55 -2.91 -0.02 3.06 16 33 H 0.41 8.33 8.89 -92.71 -0.82 7.50 16 34 H 0.14 4.08 6.34 -2.92 -0.02 4.06 16 35 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.28 15.67 8.31 -92.71 -0.77 14.89 16 37 H 0.11 5.45 5.65 -2.91 -0.02 5.43 16 38 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 39 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -65.95 329.19 5.52 -60.43 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.24 Total: 23.95 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 4.20 Total: -45.19 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -0.68 Total: -73.32 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.20 Total: -13.69 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.96 Total: 47.81 kcal Total: -65.95 5.52 -60.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212609038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.005 kcal (2) G-P(sol) polarization free energy of solvation -65.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds