Wall clock time and date at job start Tue Mar 31 2020 05:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30912 * 1 3 3 Si 1.86799 * 119.99960 * 2 1 4 4 H 1.48504 * 109.47075 * 239.99757 * 3 2 1 5 5 H 1.48500 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47216 * 119.99836 * 3 2 1 7 7 C 1.39850 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99712 * 160.86197 * 7 2 1 9 9 C 1.41101 * 120.00218 * 340.86146 * 7 2 1 10 10 C 1.40904 * 120.15142 * 335.26073 * 9 7 2 11 11 C 1.36318 * 119.83724 * 179.73921 * 10 9 7 12 12 C 1.39607 * 120.15604 * 0.55622 * 11 10 9 13 13 N 1.38810 * 119.84301 * 179.71371 * 12 11 10 14 14 C 1.39605 * 119.99932 * 144.28839 * 13 12 11 15 15 C 1.38969 * 120.07851 * 331.30856 * 14 13 12 16 16 C 1.38083 * 119.91763 * 179.76669 * 15 14 13 17 17 C 1.38305 * 120.08005 * 0.52851 * 16 15 14 18 18 C 1.50702 * 119.92125 * 179.72095 * 17 16 15 19 19 C 1.52991 * 109.47248 * 269.97685 * 18 17 16 20 20 O 1.42901 * 109.47147 * 179.97438 * 19 18 17 21 21 C 1.38305 * 120.15683 * 359.69840 * 17 16 15 22 22 C 1.38079 * 120.08522 * 0.04681 * 21 17 16 23 23 C 1.39604 * 120.31019 * 359.69162 * 12 11 10 24 24 C 1.36307 * 120.16386 * 0.02586 * 23 12 11 25 25 H 0.96996 * 119.99926 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.08393 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.92191 * 180.27296 * 11 10 9 28 28 H 0.96998 * 120.00598 * 324.29515 * 13 12 11 29 29 H 1.08004 * 120.03825 * 0.02562 * 15 14 13 30 30 H 1.07998 * 119.96191 * 180.24713 * 16 15 14 31 31 H 1.09000 * 109.46871 * 29.97952 * 18 17 16 32 32 H 1.09004 * 109.46775 * 149.97836 * 18 17 16 33 33 H 1.08997 * 109.47281 * 300.00453 * 19 18 17 34 34 H 1.09000 * 109.47098 * 59.99833 * 19 18 17 35 35 H 0.96700 * 113.99833 * 179.97438 * 20 19 18 36 36 H 1.08008 * 119.95908 * 180.02562 * 21 17 16 37 37 H 1.07992 * 120.04740 * 179.97438 * 22 21 17 38 38 H 1.08003 * 119.91716 * 180.02562 * 23 12 11 39 39 H 1.07996 * 120.08391 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0968 1.6964 1.2125 7 6 2.0084 -1.2111 0.0005 8 1 3.0436 -1.2371 -0.3061 9 6 1.3614 -2.3992 0.4017 10 6 0.2498 -2.3427 1.2657 11 6 -0.3737 -3.4941 1.6450 12 6 0.0938 -4.7278 1.1886 13 7 -0.5423 -5.8966 1.5836 14 6 -0.6537 -6.9660 0.6931 15 6 -0.7029 -6.7304 -0.6756 16 6 -0.8082 -7.7909 -1.5536 17 6 -0.8756 -9.0856 -1.0719 18 6 -0.9968 -10.2399 -2.0332 19 6 -2.4755 -10.5325 -2.2949 20 8 -2.5904 -11.6267 -3.2069 21 6 -0.8317 -9.3235 0.2898 22 6 -0.7212 -8.2683 1.1736 23 6 1.1978 -4.7916 0.3365 24 6 1.8275 -3.6479 -0.0554 25 1 -0.4850 0.8400 0.0004 26 1 -0.1102 -1.3893 1.6230 27 1 -1.2285 -3.4520 2.3036 28 1 -0.9096 -5.9704 2.4784 29 1 -0.6547 -5.7193 -1.0522 30 1 -0.8425 -7.6088 -2.6176 31 1 -0.5053 -9.9841 -2.9719 32 1 -0.5224 -11.1220 -1.6032 33 1 -2.9670 -10.7882 -1.3563 34 1 -2.9499 -9.6503 -2.7248 35 1 -3.5025 -11.8681 -3.4185 36 1 -0.8842 -10.3359 0.6624 37 1 -0.6873 -8.4547 2.2367 38 1 1.5539 -5.7495 -0.0130 39 1 2.6817 -3.6988 -0.7142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212928864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:09 Heat of formation + Delta-G solvation = -13.671233 kcal Electronic energy + Delta-G solvation = -20556.174353 eV Core-core repulsion = 17427.504572 eV Total energy + Delta-G solvation = -3128.669781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.54535 -37.92172 -36.97668 -35.27593 -33.38089 -31.82774 -30.65628 -29.68185 -28.94737 -27.15918 -24.73721 -23.05882 -22.45898 -21.16735 -20.71594 -20.08675 -17.64271 -17.38995 -16.84864 -16.43600 -15.37907 -15.26379 -14.85839 -14.33480 -14.19254 -13.99416 -13.72315 -13.26359 -13.07363 -12.79759 -12.43922 -12.14580 -11.96588 -11.78542 -11.58414 -11.35305 -11.17435 -11.11672 -11.05882 -10.74293 -10.66854 -10.09530 -9.88848 -9.74611 -9.42496 -9.15363 -8.62800 -7.85592 -7.64587 -6.86607 -6.53489 -4.29600 1.70498 1.74311 2.74762 2.98848 3.03958 3.06295 3.17686 3.89337 3.98381 4.10511 4.29272 4.57376 4.90500 5.14009 5.20421 5.23557 5.35268 5.50047 5.62375 5.67401 5.72873 5.94117 6.07149 6.10924 6.15362 6.24927 6.33452 6.66007 6.74599 6.79439 6.93755 6.98446 7.05425 7.11477 7.26075 7.43261 7.48095 7.51850 7.71623 7.96625 8.15990 8.31685 8.42488 8.57883 8.83378 8.93402 10.12915 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032799 B = 0.003019 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.480359 B = 9272.727408 C = 9650.008732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.100 3.900 10 C -0.148 4.148 11 C -0.122 4.122 12 C 0.019 3.981 13 N -0.676 5.676 14 C 0.213 3.787 15 C -0.168 4.168 16 C -0.076 4.076 17 C -0.151 4.151 18 C -0.067 4.067 19 C 0.079 3.921 20 O -0.579 6.579 21 C -0.077 4.077 22 C -0.194 4.194 23 C -0.107 4.107 24 C -0.208 4.208 25 H 0.281 0.719 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.395 0.605 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.377 0.623 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 -13.119 -0.496 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.097 3.903 10 C -0.168 4.168 11 C -0.143 4.143 12 C -0.075 4.075 13 N -0.296 5.296 14 C 0.110 3.890 15 C -0.190 4.190 16 C -0.095 4.095 17 C -0.153 4.153 18 C -0.104 4.104 19 C 0.002 3.998 20 O -0.385 6.385 21 C -0.095 4.095 22 C -0.216 4.216 23 C -0.127 4.127 24 C -0.228 4.228 25 H 0.092 0.908 26 H 0.137 0.863 27 H 0.107 0.893 28 H 0.229 0.771 29 H 0.147 0.853 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.224 0.776 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.109 0.891 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.369 -12.786 -0.551 13.523 hybrid contribution -0.476 0.849 0.342 1.031 sum -4.845 -11.938 -0.209 12.885 Atomic orbital electron populations 1.69855 1.07577 1.29412 1.34872 1.25906 0.94710 1.01341 0.92281 0.86380 0.80190 0.80226 0.80033 1.18978 1.20349 1.18803 1.19484 0.98636 0.91491 1.39262 0.90414 1.17611 0.91461 0.92056 0.89145 1.20884 0.99345 0.96490 1.00038 1.20279 0.99407 0.91813 1.02761 1.17124 0.97308 0.84436 1.08600 1.41636 1.61711 1.12460 1.13844 1.17905 0.93499 0.87394 0.90160 1.21027 1.06090 0.99853 0.91985 1.20791 0.98011 0.91626 0.99034 1.19323 1.08530 0.93869 0.93627 1.20279 0.94944 0.96518 0.98707 1.22251 0.97397 0.88364 0.91807 1.86457 1.32208 1.53093 1.66697 1.20642 0.98595 0.97933 0.92367 1.20679 1.10394 0.91122 0.99427 1.20167 0.94913 0.97192 1.00454 1.20598 1.03733 0.92503 1.05983 0.90774 0.86345 0.89258 0.77123 0.85340 0.86565 0.90872 0.91021 0.93655 0.93501 0.77613 0.86772 0.86624 0.89060 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.04 11.04 55.54 0.61 -19.43 16 2 C 0.08 1.86 5.10 -17.34 -0.09 1.77 16 3 Si 0.91 18.30 29.60 -169.99 -5.03 13.26 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -11.92 9.02 -37.89 -0.34 -12.26 16 8 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 9 C 0.10 2.60 5.57 -106.79 -0.59 2.00 16 10 C -0.15 -3.71 8.64 -39.26 -0.34 -4.05 16 11 C -0.12 -2.75 9.90 -39.76 -0.39 -3.14 16 12 C 0.02 0.41 5.76 -83.68 -0.48 -0.08 16 13 N -0.68 -12.03 5.40 -8.30 -0.04 -12.08 16 14 C 0.21 3.59 5.91 -83.77 -0.50 3.10 16 15 C -0.17 -2.88 8.13 -39.37 -0.32 -3.20 16 16 C -0.08 -1.12 9.69 -39.61 -0.38 -1.50 16 17 C -0.15 -2.01 5.14 -104.57 -0.54 -2.55 16 18 C -0.07 -0.76 5.71 -27.89 -0.16 -0.92 16 19 C 0.08 0.81 7.03 37.15 0.26 1.07 16 20 O -0.58 -5.83 13.66 -35.23 -0.48 -6.31 16 21 C -0.08 -1.00 9.69 -39.61 -0.38 -1.39 16 22 C -0.19 -2.79 9.95 -39.37 -0.39 -3.18 16 23 C -0.11 -2.37 7.94 -39.77 -0.32 -2.69 16 24 C -0.21 -5.01 9.74 -39.27 -0.38 -5.39 16 25 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 26 H 0.12 3.07 6.21 -52.49 -0.33 2.74 16 27 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.39 6.08 8.91 -40.82 -0.36 5.72 16 29 H 0.13 2.49 6.73 -52.48 -0.35 2.13 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 32 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.38 2.02 9.12 45.56 0.42 2.43 16 36 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 37 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.09 1.92 6.99 -52.48 -0.37 1.56 16 39 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 330.85 15.07 4.99 4.99 Total: -1.00 -28.00 330.85 -9.65 -37.65 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -4.34 Total: 14.33 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -5.35 Total: -32.41 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.57 Total: -31.51 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.48 Total: -6.31 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.00 -9.65 -37.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212928864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.974 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds